Wall clock time and date at job start Tue Mar 31 2020 13:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48509 * 109.47077 * 90.00316 * 3 2 1 5 5 H 1.48500 * 109.47133 * 209.99894 * 3 2 1 6 6 H 1.48501 * 109.47085 * 330.00361 * 3 2 1 7 7 C 1.40043 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99932 * 15.86453 * 7 2 1 9 9 C 1.41418 * 120.00236 * 195.86710 * 7 2 1 10 10 C 1.40487 * 119.77881 * 188.65684 * 9 7 2 11 11 C 1.39337 * 118.83604 * 179.77360 * 10 9 7 12 12 C 1.48316 * 120.83057 * 180.24153 * 11 10 9 13 13 C 1.39483 * 119.97869 * 359.97438 * 12 11 10 14 14 C 1.37698 * 120.02366 * 179.72450 * 13 12 11 15 15 C 1.39666 * 119.97819 * 0.54447 * 14 13 12 16 16 C 1.47774 * 120.02785 * 179.70650 * 15 14 13 17 17 O 1.21566 * 119.99488 * 352.05554 * 16 15 14 18 18 N 1.34770 * 120.00575 * 172.06415 * 16 15 14 19 19 C 1.47026 * 125.64868 * 4.90913 * 18 16 15 20 20 C 1.54312 * 107.27890 * 180.97579 * 19 18 16 21 21 C 1.55155 * 102.86311 * 22.52707 * 20 19 18 22 22 C 1.47430 * 125.65214 * 185.22877 * 18 16 15 23 23 C 1.39677 * 119.95178 * 359.72450 * 15 14 13 24 24 C 1.37701 * 119.97921 * 0.02562 * 23 15 14 25 25 C 1.40072 * 118.34177 * 0.49697 * 11 10 9 26 26 C 1.38522 * 119.41884 * 359.74232 * 25 11 10 27 27 N 1.31466 * 121.15275 * 0.02562 * 26 25 11 28 28 H 0.97004 * 119.99547 * 174.93441 * 1 2 3 29 29 H 1.08004 * 120.58216 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.98068 * 359.97284 * 13 12 11 31 31 H 1.08006 * 120.00854 * 180.27368 * 14 13 12 32 32 H 1.09001 * 109.88257 * 300.52535 * 19 18 16 33 33 H 1.09004 * 109.87813 * 61.68647 * 19 18 16 34 34 H 1.09007 * 110.92002 * 264.11556 * 20 19 18 35 35 H 1.08996 * 110.59096 * 140.79080 * 20 19 18 36 36 H 1.08999 * 111.00684 * 206.23322 * 21 20 19 37 37 H 1.08996 * 111.00508 * 82.37604 * 21 20 19 38 38 H 1.08999 * 110.36415 * 274.66670 * 22 18 16 39 39 H 1.09003 * 110.36558 * 36.87707 * 22 18 16 40 40 H 1.08002 * 120.01200 * 180.02562 * 23 15 14 41 41 H 1.07992 * 119.98925 * 180.02562 * 24 23 15 42 42 H 1.07997 * 120.29261 * 179.72725 * 25 11 10 43 43 H 1.08010 * 119.42815 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0464 1.4002 5 1 3.5389 1.4402 -0.7000 6 1 1.4387 2.6527 -0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 1.4984 -2.1302 -0.2566 9 6 3.3814 -1.2363 0.3343 10 6 4.1225 -2.4166 0.1576 11 6 5.4758 -2.4164 0.4894 12 6 6.3012 -3.6363 0.3156 13 6 5.7237 -4.8031 -0.1851 14 6 6.4905 -5.9346 -0.3522 15 6 7.8443 -5.9170 -0.0094 16 6 8.6667 -7.1326 -0.1821 17 8 8.1391 -8.1854 -0.4840 18 7 10.0014 -7.0741 -0.0048 19 6 10.7536 -5.8988 0.4581 20 6 12.2459 -6.2909 0.4845 21 6 12.3084 -7.4794 -0.5110 22 6 10.9498 -8.1761 -0.2492 23 6 8.4203 -4.7498 0.4972 24 6 7.6530 -3.6178 0.6587 25 6 6.0360 -1.2369 0.9963 26 6 5.2382 -0.1145 1.1466 27 7 3.9643 -0.1372 0.8222 28 1 -0.4850 -0.8368 -0.0742 29 1 3.6525 -3.3074 -0.2324 30 1 4.6757 -4.8178 -0.4456 31 1 6.0441 -6.8366 -0.7440 32 1 10.5993 -5.0660 -0.2281 33 1 10.4275 -5.6212 1.4605 34 1 12.5474 -6.6078 1.4829 35 1 12.8657 -5.4642 0.1375 36 1 13.1398 -8.1435 -0.2749 37 1 12.3736 -7.1246 -1.5395 38 1 11.0166 -8.8205 0.6274 39 1 10.6435 -8.7538 -1.1213 40 1 9.4672 -4.7350 0.7623 41 1 8.0983 -2.7152 1.0500 42 1 7.0807 -1.2029 1.2678 43 1 5.6699 0.7950 1.5378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239895722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:46 Heat of formation + Delta-G solvation = 28.082268 kcal Electronic energy + Delta-G solvation = -25433.338378 eV Core-core repulsion = 21829.063353 eV Total energy + Delta-G solvation = -3604.275024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69923 -39.19104 -38.07318 -37.44940 -34.02740 -33.12349 -31.99530 -31.18486 -30.39399 -29.76273 -28.77914 -25.69507 -25.14895 -23.19396 -22.96488 -21.65566 -21.07682 -20.54565 -20.02071 -18.36847 -17.55547 -16.90012 -16.44221 -15.94684 -15.25941 -15.16298 -14.70090 -14.50578 -14.07570 -14.01900 -13.86603 -13.68732 -13.45389 -13.36704 -13.02719 -12.90739 -12.62500 -12.46485 -12.27705 -12.22741 -11.81886 -11.65836 -11.40704 -11.23138 -10.98626 -10.79727 -10.35983 -10.16307 -10.02692 -9.81437 -9.51813 -9.22235 -9.02787 -8.86719 -8.11039 -7.96567 -7.79228 -7.34886 -4.85371 0.68096 1.47939 2.33805 2.46397 2.68784 3.04127 3.51257 3.58926 3.89823 3.99917 4.02866 4.09093 4.33465 4.44671 4.54479 4.55943 4.78839 4.82795 4.94330 5.01093 5.06430 5.10671 5.27802 5.38106 5.40376 5.43762 5.45705 5.47599 5.52282 5.64373 5.68774 5.79681 5.93645 6.01437 6.19554 6.27835 6.32053 6.36496 6.47412 6.67082 6.86520 6.95562 7.14575 7.22230 7.31137 7.37659 7.57421 7.98903 7.99158 8.19396 8.54190 9.41707 9.90422 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.029745 B = 0.002478 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.094328 B =11294.901326 C =12107.047408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.048 3.952 3 Si 1.144 2.856 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.326 1.326 7 C -0.474 4.474 8 H 0.083 0.917 9 C 0.248 3.752 10 C -0.236 4.236 11 C 0.002 3.998 12 C 0.007 3.993 13 C -0.122 4.122 14 C -0.057 4.057 15 C -0.151 4.151 16 C 0.579 3.421 17 O -0.541 6.541 18 N -0.618 5.618 19 C 0.088 3.912 20 C -0.136 4.136 21 C -0.134 4.134 22 C 0.106 3.894 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.302 4.302 26 C 0.148 3.852 27 N -0.568 5.568 28 H 0.285 0.715 29 H 0.109 0.891 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.156 0.844 41 H 0.132 0.868 42 H 0.107 0.893 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.740 -10.078 0.648 24.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.175 4.175 3 Si 0.977 3.023 4 H -0.211 1.211 5 H -0.207 1.207 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.101 0.899 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.004 4.004 12 C 0.007 3.993 13 C -0.140 4.140 14 C -0.076 4.076 15 C -0.155 4.155 16 C 0.370 3.630 17 O -0.419 6.419 18 N -0.353 5.353 19 C -0.034 4.034 20 C -0.174 4.174 21 C -0.172 4.172 22 C -0.017 4.017 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.325 4.325 26 C -0.013 4.013 27 N -0.286 5.286 28 H 0.096 0.904 29 H 0.127 0.873 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.173 0.827 41 H 0.150 0.850 42 H 0.125 0.875 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 21.507 -8.421 0.635 23.106 hybrid contribution 0.541 -2.614 -0.070 2.671 sum 22.048 -11.036 0.565 24.662 Atomic orbital electron populations 1.70619 1.08303 1.33108 1.29793 1.27761 0.95193 1.06149 0.88387 0.82111 0.72559 0.69787 0.77877 1.21084 1.20689 1.25866 1.20759 0.93215 0.97050 1.39471 0.89937 1.18518 0.93411 0.86899 0.88670 1.21812 0.93248 0.99912 1.10813 1.18689 0.92992 0.91549 0.97148 1.19307 0.93155 0.93067 0.93773 1.21332 1.00658 0.91984 1.00051 1.21131 0.91994 0.98352 0.96091 1.19687 0.94789 0.93649 1.07332 1.18089 0.80040 0.88507 0.76348 1.90762 1.71324 1.31183 1.48622 1.48331 1.05750 1.13992 1.67224 1.22591 0.91567 0.89236 1.00024 1.22738 0.95054 0.99062 1.00527 1.22802 0.96728 0.97517 1.00187 1.22231 0.87850 0.89894 1.01691 1.22529 1.01841 0.92057 0.97696 1.21255 0.93345 0.98463 1.00939 1.21187 0.99891 0.94762 1.16706 1.22072 0.89679 0.96291 0.93252 1.66773 1.11925 1.28807 1.21122 0.90375 0.87288 0.84823 0.84958 0.89962 0.90127 0.90263 0.89641 0.89642 0.90425 0.91369 0.90314 0.82750 0.85025 0.87533 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.32 13.65 55.55 0.76 -20.56 16 2 C 0.05 1.27 5.51 -17.34 -0.10 1.17 16 3 Si 1.14 27.36 25.93 -169.99 -4.41 22.95 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.70 6.54 56.52 0.37 -6.33 16 6 H -0.33 -7.64 7.11 56.52 0.40 -7.24 16 7 C -0.47 -12.61 9.51 -37.70 -0.36 -12.97 16 8 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 9 C 0.25 6.30 6.27 -85.02 -0.53 5.77 16 10 C -0.24 -5.34 9.22 -38.33 -0.35 -5.70 16 11 C 0.00 0.04 5.90 -104.65 -0.62 -0.58 16 12 C 0.01 0.13 5.88 -104.82 -0.62 -0.49 16 13 C -0.12 -1.98 9.43 -39.31 -0.37 -2.35 16 14 C -0.06 -0.86 9.58 -39.25 -0.38 -1.24 16 15 C -0.15 -2.15 5.87 -104.93 -0.62 -2.77 16 16 C 0.58 8.24 7.80 -12.36 -0.10 8.14 16 17 O -0.54 -9.40 16.66 5.31 0.09 -9.31 16 18 N -0.62 -6.53 3.33 -175.90 -0.59 -7.11 16 19 C 0.09 0.63 4.86 -3.07 -0.01 0.62 16 20 C -0.14 -0.63 6.95 -24.90 -0.17 -0.81 16 21 C -0.13 -0.69 7.08 -24.58 -0.17 -0.87 16 22 C 0.11 0.88 6.89 -2.53 -0.02 0.86 16 23 C -0.12 -1.52 8.58 -39.24 -0.34 -1.86 16 24 C -0.12 -1.72 9.43 -39.32 -0.37 -2.09 16 25 C -0.30 -5.87 9.51 -38.79 -0.37 -6.24 16 26 C 0.15 3.13 11.17 -17.60 -0.20 2.93 16 27 N -0.57 -14.03 5.02 -11.20 -0.06 -14.09 16 28 H 0.28 7.29 8.73 -40.82 -0.36 6.93 16 29 H 0.11 2.31 6.32 -52.48 -0.33 1.98 16 30 H 0.13 2.12 6.27 -52.49 -0.33 1.79 16 31 H 0.13 1.92 7.66 -52.48 -0.40 1.52 16 32 H 0.08 0.57 6.69 -51.93 -0.35 0.22 16 33 H 0.08 0.53 6.77 -51.93 -0.35 0.18 16 34 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.16 1.38 2.75 -57.98 -0.16 1.22 16 41 H 0.13 1.63 6.26 -52.49 -0.33 1.30 16 42 H 0.11 1.71 6.31 -52.49 -0.33 1.38 16 43 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -31.28 347.49 -9.80 -41.08 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.14 Total: 0.26 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -5.69 Total: -18.46 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.12 Total: -41.76 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 27.36 SS G_CDS: -4.41 Total: 22.95 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.28 -9.80 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239895722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.159 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds