Wall clock time and date at job start Tue Mar 31 2020 13:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48509 * 109.47077 * 90.00316 * 3 2 1 5 5 H 1.48500 * 109.47133 * 209.99894 * 3 2 1 6 6 H 1.48501 * 109.47085 * 330.00361 * 3 2 1 7 7 C 1.40043 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99932 * 15.86453 * 7 2 1 9 9 C 1.41418 * 120.00236 * 195.86710 * 7 2 1 10 10 C 1.40487 * 119.77881 * 188.65684 * 9 7 2 11 11 C 1.39337 * 118.83604 * 179.77360 * 10 9 7 12 12 C 1.48316 * 120.83057 * 180.24153 * 11 10 9 13 13 C 1.39483 * 119.97869 * 359.97438 * 12 11 10 14 14 C 1.37698 * 120.02366 * 179.72450 * 13 12 11 15 15 C 1.39666 * 119.97819 * 0.54447 * 14 13 12 16 16 C 1.47774 * 120.02785 * 179.70650 * 15 14 13 17 17 O 1.21566 * 119.99488 * 352.05554 * 16 15 14 18 18 N 1.34770 * 120.00575 * 172.06415 * 16 15 14 19 19 C 1.47026 * 125.64868 * 4.90913 * 18 16 15 20 20 C 1.54312 * 107.27890 * 180.97579 * 19 18 16 21 21 C 1.55155 * 102.86311 * 22.52707 * 20 19 18 22 22 C 1.47430 * 125.65214 * 185.22877 * 18 16 15 23 23 C 1.39677 * 119.95178 * 359.72450 * 15 14 13 24 24 C 1.37701 * 119.97921 * 0.02562 * 23 15 14 25 25 C 1.40072 * 118.34177 * 0.49697 * 11 10 9 26 26 C 1.38522 * 119.41884 * 359.74232 * 25 11 10 27 27 N 1.31466 * 121.15275 * 0.02562 * 26 25 11 28 28 H 0.97004 * 119.99547 * 174.93441 * 1 2 3 29 29 H 1.08004 * 120.58216 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.98068 * 359.97284 * 13 12 11 31 31 H 1.08006 * 120.00854 * 180.27368 * 14 13 12 32 32 H 1.09001 * 109.88257 * 300.52535 * 19 18 16 33 33 H 1.09004 * 109.87813 * 61.68647 * 19 18 16 34 34 H 1.09007 * 110.92002 * 264.11556 * 20 19 18 35 35 H 1.08996 * 110.59096 * 140.79080 * 20 19 18 36 36 H 1.08999 * 111.00684 * 206.23322 * 21 20 19 37 37 H 1.08996 * 111.00508 * 82.37604 * 21 20 19 38 38 H 1.08999 * 110.36415 * 274.66670 * 22 18 16 39 39 H 1.09003 * 110.36558 * 36.87707 * 22 18 16 40 40 H 1.08002 * 120.01200 * 180.02562 * 23 15 14 41 41 H 1.07992 * 119.98925 * 180.02562 * 24 23 15 42 42 H 1.07997 * 120.29261 * 179.72725 * 25 11 10 43 43 H 1.08010 * 119.42815 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0464 1.4002 5 1 3.5389 1.4402 -0.7000 6 1 1.4387 2.6527 -0.7000 7 6 2.0076 -1.2128 -0.0005 8 1 1.4984 -2.1302 -0.2566 9 6 3.3814 -1.2363 0.3343 10 6 4.1225 -2.4166 0.1576 11 6 5.4758 -2.4164 0.4894 12 6 6.3012 -3.6363 0.3156 13 6 5.7237 -4.8031 -0.1851 14 6 6.4905 -5.9346 -0.3522 15 6 7.8443 -5.9170 -0.0094 16 6 8.6667 -7.1326 -0.1821 17 8 8.1391 -8.1854 -0.4840 18 7 10.0014 -7.0741 -0.0048 19 6 10.7536 -5.8988 0.4581 20 6 12.2459 -6.2909 0.4845 21 6 12.3084 -7.4794 -0.5110 22 6 10.9498 -8.1761 -0.2492 23 6 8.4203 -4.7498 0.4972 24 6 7.6530 -3.6178 0.6587 25 6 6.0360 -1.2369 0.9963 26 6 5.2382 -0.1145 1.1466 27 7 3.9643 -0.1372 0.8222 28 1 -0.4850 -0.8368 -0.0742 29 1 3.6525 -3.3074 -0.2324 30 1 4.6757 -4.8178 -0.4456 31 1 6.0441 -6.8366 -0.7440 32 1 10.5993 -5.0660 -0.2281 33 1 10.4275 -5.6212 1.4605 34 1 12.5474 -6.6078 1.4829 35 1 12.8657 -5.4642 0.1375 36 1 13.1398 -8.1435 -0.2749 37 1 12.3736 -7.1246 -1.5395 38 1 11.0166 -8.8205 0.6274 39 1 10.6435 -8.7538 -1.1213 40 1 9.4672 -4.7350 0.7623 41 1 8.0983 -2.7152 1.0500 42 1 7.0807 -1.2029 1.2678 43 1 5.6699 0.7950 1.5378 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239895722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:45 Heat of formation + Delta-G solvation = 10.663515 kcal Electronic energy + Delta-G solvation = -25434.093711 eV Core-core repulsion = 21829.063353 eV Total energy + Delta-G solvation = -3605.030358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.68895 -40.67054 -39.33441 -38.42375 -35.85317 -34.52051 -33.01471 -32.46280 -31.87872 -30.82096 -29.71769 -27.49213 -26.22178 -24.42107 -24.12968 -22.73139 -22.18085 -21.91148 -20.99688 -20.19620 -18.56259 -17.85677 -17.58698 -17.18331 -16.77358 -16.58036 -16.01437 -15.62627 -15.43329 -15.31755 -14.85991 -14.76927 -14.64819 -14.45861 -14.26828 -14.18214 -13.95124 -13.87475 -13.68077 -13.32087 -12.91633 -12.78545 -12.65765 -12.13883 -12.13620 -11.84334 -11.76134 -11.60375 -11.42614 -11.16191 -11.11282 -11.03806 -10.08262 -9.91566 -9.80793 -9.75282 -9.31055 -9.26138 -6.81020 -0.58968 0.33577 0.68805 0.86434 1.57488 1.67993 1.81677 1.86553 2.01929 2.44235 2.58868 2.87241 3.31595 3.56460 3.61231 3.63752 3.73962 3.84469 3.91533 4.01542 4.07182 4.24691 4.26928 4.33235 4.45577 4.47952 4.55674 4.60067 4.73642 4.74355 4.80898 4.93199 4.97590 4.97865 5.07149 5.13546 5.18283 5.23600 5.29613 5.32630 5.36158 5.39825 5.42154 5.67414 5.80757 5.91534 6.02145 6.32556 6.36266 6.65647 6.96071 7.61281 7.93073 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.029745 B = 0.002478 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.094328 B =11294.901326 C =12107.047408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.018 3.982 3 Si 1.180 2.820 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.323 1.323 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.236 3.764 10 C -0.264 4.264 11 C 0.009 3.991 12 C -0.023 4.023 13 C -0.129 4.129 14 C -0.070 4.070 15 C -0.149 4.149 16 C 0.569 3.431 17 O -0.586 6.586 18 N -0.613 5.613 19 C 0.071 3.929 20 C -0.126 4.126 21 C -0.125 4.125 22 C 0.095 3.905 23 C -0.107 4.107 24 C -0.108 4.108 25 C -0.274 4.274 26 C 0.129 3.871 27 N -0.589 5.589 28 H 0.279 0.721 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.198 0.802 41 H 0.163 0.837 42 H 0.157 0.843 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.814 -9.354 2.017 30.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.199 4.199 3 Si 1.010 2.990 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.255 1.255 7 C -0.551 4.551 8 H 0.078 0.922 9 C 0.112 3.888 10 C -0.286 4.286 11 C 0.003 3.997 12 C -0.023 4.023 13 C -0.147 4.147 14 C -0.089 4.089 15 C -0.152 4.152 16 C 0.361 3.639 17 O -0.468 6.468 18 N -0.346 5.346 19 C -0.050 4.050 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.027 4.027 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.295 4.295 26 C -0.030 4.030 27 N -0.308 5.308 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.214 0.786 41 H 0.180 0.820 42 H 0.174 0.826 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 27.639 -7.686 2.019 28.759 hybrid contribution -0.888 -3.087 -0.445 3.243 sum 26.751 -10.773 1.575 28.882 Atomic orbital electron populations 1.70651 1.08638 1.32733 1.33050 1.28569 0.95456 1.07981 0.87847 0.81654 0.71688 0.67810 0.77872 1.20648 1.20843 1.25505 1.20681 0.94592 0.96481 1.43301 0.92201 1.18609 0.93235 0.88240 0.88707 1.21874 0.94879 0.99277 1.12599 1.19047 0.92131 0.93334 0.95174 1.19260 0.94526 0.91896 0.96634 1.21285 1.00426 0.92549 1.00448 1.21133 0.92929 0.97900 0.96911 1.19915 0.94300 0.94633 1.06360 1.18148 0.81397 0.87849 0.76552 1.90739 1.72557 1.32543 1.50970 1.48458 1.04880 1.15938 1.65290 1.22939 0.93064 0.88233 1.00754 1.22756 0.93183 0.99313 1.01085 1.22800 0.95058 0.97899 1.00566 1.22471 0.89146 0.89844 1.01258 1.22990 1.03522 0.90275 0.95615 1.21560 0.91683 1.00023 0.99329 1.21796 1.01918 0.93164 1.12645 1.22862 0.88687 0.98635 0.92835 1.66717 1.13988 1.28691 1.21405 0.90983 0.87618 0.86009 0.85479 0.88915 0.88698 0.89020 0.87431 0.87524 0.90428 0.90883 0.92075 0.78635 0.82001 0.82587 0.81274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.86 13.65 21.84 0.30 -46.57 16 2 C 0.02 1.02 5.51 85.29 0.47 1.49 16 3 Si 1.18 56.57 25.93 68.60 1.78 58.35 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.28 -13.29 6.54 99.48 0.65 -12.64 16 6 H -0.32 -15.00 7.11 99.48 0.71 -14.29 16 7 C -0.52 -29.44 9.51 23.49 0.22 -29.22 16 8 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 9 C 0.24 12.36 6.27 40.20 0.25 12.61 16 10 C -0.26 -12.29 9.22 23.08 0.21 -12.07 16 11 C 0.01 0.36 5.90 -19.89 -0.12 0.24 16 12 C -0.02 -0.73 5.88 -20.00 -0.12 -0.85 16 13 C -0.13 -4.19 9.43 22.44 0.21 -3.98 16 14 C -0.07 -2.11 9.58 22.49 0.22 -1.90 16 15 C -0.15 -3.92 5.87 -20.06 -0.12 -4.04 16 16 C 0.57 15.44 7.80 86.77 0.68 16.11 16 17 O -0.59 -20.59 16.66 -3.93 -0.07 -20.66 16 18 N -0.61 -11.21 3.33 -828.69 -2.76 -13.96 16 19 C 0.07 0.65 4.86 86.72 0.42 1.07 16 20 C -0.13 -0.48 6.95 31.78 0.22 -0.26 16 21 C -0.13 -0.79 7.08 31.99 0.23 -0.56 16 22 C 0.09 1.36 6.89 86.85 0.60 1.96 16 23 C -0.11 -2.14 8.58 22.49 0.19 -1.94 16 24 C -0.11 -2.51 9.43 22.44 0.21 -2.30 16 25 C -0.27 -9.37 9.51 22.78 0.22 -9.16 16 26 C 0.13 5.01 11.17 84.82 0.95 5.96 16 27 N -0.59 -28.66 5.02 -189.35 -0.95 -29.61 16 28 H 0.28 15.43 8.73 -92.71 -0.81 14.62 16 29 H 0.11 4.82 6.32 -2.91 -0.02 4.80 16 30 H 0.12 4.13 6.27 -2.91 -0.02 4.11 16 31 H 0.13 3.89 7.66 -2.91 -0.02 3.87 16 32 H 0.09 0.72 6.69 -2.39 -0.02 0.71 16 33 H 0.10 0.67 6.77 -2.39 -0.02 0.65 16 34 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 35 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 40 H 0.20 2.25 2.75 -8.07 -0.02 2.23 16 41 H 0.16 2.78 6.26 -2.91 -0.02 2.76 16 42 H 0.16 3.81 6.31 -2.91 -0.02 3.79 16 43 H 0.17 5.10 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -73.64 347.49 4.19 -69.44 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.94 Total: 9.84 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 4.95 Total: -26.83 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -3.41 Total: -90.14 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.07 Total: -20.66 kcal Atomic # 14 Polarization: 56.57 SS G_CDS: 1.78 Total: 58.35 kcal Total: -73.64 4.19 -69.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239895722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.109 kcal (2) G-P(sol) polarization free energy of solvation -73.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds