Wall clock time and date at job start Tue Mar 31 2020 13:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48499 * 109.46976 * 239.99480 * 3 2 1 5 5 H 1.48497 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46898 * 119.99534 * 3 2 1 7 7 C 1.40163 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.40983 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.40877 * 119.67457 * 180.02562 * 9 7 2 11 11 C 1.36691 * 119.25620 * 179.71526 * 10 9 7 12 12 C 1.40311 * 118.59544 * 0.50629 * 11 10 9 13 13 C 1.47870 * 120.34829 * 179.76968 * 12 11 10 14 14 C 1.39761 * 119.99793 * 179.72316 * 13 12 11 15 15 C 1.37118 * 119.99980 * 180.02562 * 14 13 12 16 16 C 1.39759 * 119.99804 * 359.97438 * 15 14 13 17 17 C 1.47727 * 120.00244 * 180.02562 * 16 15 14 18 18 O 1.21579 * 119.99634 * 7.98589 * 17 16 15 19 19 N 1.34769 * 120.00269 * 187.98633 * 17 16 15 20 20 C 1.47018 * 125.65196 * 354.73752 * 19 17 16 21 21 C 1.54320 * 107.40545 * 178.97702 * 20 19 17 22 22 C 1.55157 * 102.94330 * 337.72970 * 21 20 19 23 23 C 1.47744 * 125.81640 * 174.63121 * 19 17 16 24 24 C 1.39766 * 120.00030 * 0.27196 * 16 15 14 25 25 C 1.37114 * 119.99923 * 359.45420 * 24 16 15 26 26 C 1.40140 * 119.29925 * 359.49344 * 12 11 10 27 27 N 1.31167 * 120.68630 * 0.25673 * 26 12 11 28 28 H 0.96994 * 120.00073 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.37256 * 359.97438 * 10 9 7 30 30 H 1.07996 * 120.70319 * 180.25186 * 11 10 9 31 31 H 1.08003 * 120.00032 * 359.97438 * 14 13 12 32 32 H 1.07996 * 120.00012 * 180.02562 * 15 14 13 33 33 H 1.08999 * 109.88096 * 59.48265 * 20 19 17 34 34 H 1.09004 * 109.88182 * 298.47324 * 20 19 17 35 35 H 1.09003 * 110.71827 * 96.09147 * 21 20 19 36 36 H 1.08999 * 110.72404 * 219.36217 * 21 20 19 37 37 H 1.08997 * 111.00406 * 153.57334 * 22 21 20 38 38 H 1.08997 * 111.00273 * 277.42709 * 22 21 20 39 39 H 1.08992 * 110.28909 * 85.26236 * 23 19 17 40 40 H 1.09003 * 110.47578 * 323.02717 * 23 19 17 41 41 H 1.08004 * 119.99771 * 179.70477 * 24 16 15 42 42 H 1.08004 * 119.99988 * 180.25117 * 25 24 16 43 43 H 1.07997 * 119.65662 * 180.27440 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2124 5 1 1.2756 2.7464 -0.0006 6 1 3.0943 1.6965 1.2126 7 6 2.0077 -1.2138 0.0005 8 1 3.0876 -1.2138 0.0010 9 6 1.3028 -2.4348 0.0005 10 6 2.0141 -3.6508 0.0016 11 6 1.3221 -4.8295 0.0076 12 6 -0.0803 -4.7850 0.0015 13 6 -0.8676 -6.0367 0.0024 14 6 -2.2642 -5.9837 0.0022 15 6 -2.9943 -7.1444 0.0036 16 6 -2.3418 -8.3803 0.0047 17 6 -3.1282 -9.6308 0.0056 18 8 -4.3345 -9.5904 -0.1409 19 7 -2.5086 -10.8165 0.1689 20 6 -1.0547 -11.0200 0.2465 21 6 -0.8105 -12.5287 0.4607 22 6 -2.1559 -13.0168 1.0598 23 6 -3.1743 -12.1287 0.3020 24 6 -0.9451 -8.4332 0.0101 25 6 -0.2151 -7.2726 0.0031 26 6 -0.7270 -3.5417 0.0004 27 7 -0.0351 -2.4273 -0.0001 28 1 -0.4850 0.8400 -0.0004 29 1 3.0941 -3.6516 0.0021 30 1 1.8437 -5.7752 0.0126 31 1 -2.7684 -5.0286 0.0017 32 1 -4.0735 -7.1035 0.0030 33 1 -0.6456 -10.4557 1.0845 34 1 -0.5850 -10.6967 -0.6825 35 1 -0.6083 -13.0251 -0.4884 36 1 0.0063 -12.6912 1.1638 37 1 -2.3203 -14.0722 0.8426 38 1 -2.1966 -12.8295 2.1328 39 1 -3.3843 -12.5476 -0.6820 40 1 -4.0953 -12.0325 0.8771 41 1 -0.4409 -9.3883 0.0158 42 1 0.8642 -7.3135 0.0032 43 1 -1.8062 -3.5007 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239895818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:25 Heat of formation + Delta-G solvation = 42.664213 kcal Electronic energy + Delta-G solvation = -25288.781378 eV Core-core repulsion = 21685.138674 eV Total energy + Delta-G solvation = -3603.642704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.41691 -38.86473 -37.75798 -37.17636 -34.06857 -32.55100 -31.61052 -31.05242 -30.40476 -29.44782 -28.66676 -26.07767 -24.43017 -23.07526 -22.50004 -21.65565 -20.81922 -20.49292 -19.78985 -17.75683 -17.28174 -16.71431 -16.19089 -15.74179 -15.55297 -14.67814 -14.63881 -14.40395 -13.91914 -13.89235 -13.58563 -13.40176 -13.19360 -13.10123 -12.87105 -12.70668 -12.49625 -12.23524 -11.95512 -11.78364 -11.56372 -11.46684 -11.33971 -11.17632 -11.09072 -10.93787 -10.53930 -10.28745 -10.12274 -9.75934 -9.73487 -8.95764 -8.78980 -8.60358 -8.37258 -7.78604 -7.31800 -6.69342 -4.74695 1.07559 1.86289 2.49850 2.89943 2.91365 2.93233 2.94888 2.96337 3.33967 3.72205 4.18623 4.24787 4.26645 4.57218 4.64451 4.83582 4.94213 5.03773 5.20189 5.28777 5.31269 5.40054 5.50319 5.53432 5.57308 5.63870 5.71269 5.75834 5.81116 5.86208 5.93948 5.98498 6.12634 6.34306 6.41476 6.54948 6.58790 6.71885 6.80003 6.83268 6.95924 7.16355 7.30762 7.45588 7.48412 7.62347 7.78565 7.94146 8.26009 8.33440 8.63391 9.84575 10.00002 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.035144 B = 0.002249 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.520258 B =12446.238080 C =13175.226940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.060 3.940 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.397 4.397 8 H 0.090 0.910 9 C 0.249 3.751 10 C -0.272 4.272 11 C -0.031 4.031 12 C -0.289 4.289 13 C 0.068 3.932 14 C -0.162 4.162 15 C -0.041 4.041 16 C -0.192 4.192 17 C 0.582 3.418 18 O -0.549 6.549 19 N -0.621 5.621 20 C 0.091 3.909 21 C -0.136 4.136 22 C -0.134 4.134 23 C 0.106 3.894 24 C -0.107 4.107 25 C -0.164 4.164 26 C 0.165 3.835 27 N -0.489 5.489 28 H 0.280 0.720 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.121 0.879 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 -17.530 1.288 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.168 4.168 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.426 4.426 8 H 0.108 0.892 9 C 0.127 3.873 10 C -0.294 4.294 11 C -0.054 4.054 12 C -0.295 4.295 13 C 0.066 3.934 14 C -0.181 4.181 15 C -0.060 4.060 16 C -0.195 4.195 17 C 0.375 3.625 18 O -0.428 6.428 19 N -0.356 5.356 20 C -0.032 4.032 21 C -0.174 4.174 22 C -0.172 4.172 23 C -0.016 4.016 24 C -0.125 4.125 25 C -0.183 4.183 26 C -0.006 4.006 27 N -0.200 5.200 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.165 0.835 42 H 0.139 0.861 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.017 -16.392 1.195 16.467 hybrid contribution 0.898 -0.123 -0.021 0.906 sum -0.120 -16.515 1.174 16.557 Atomic orbital electron populations 1.70082 1.07464 1.28822 1.24816 1.26256 0.95088 1.01690 0.93805 0.86256 0.80120 0.79658 0.80215 1.18601 1.19859 1.18597 1.19861 0.94772 0.89593 1.38371 0.89227 1.18698 0.88643 0.91986 0.87945 1.21448 0.98969 0.93532 1.15470 1.20678 0.93000 0.96797 0.94886 1.19064 0.93224 0.92422 1.24757 1.19137 0.92521 0.92819 0.88912 1.21030 0.93473 0.98031 1.05525 1.20890 0.99839 0.90869 0.94400 1.19437 0.93496 0.92377 1.14222 1.18154 0.86794 0.82226 0.75327 1.90732 1.14543 1.86779 1.50789 1.48389 1.07082 1.06450 1.73686 1.22546 0.82027 0.96626 1.01984 1.22741 0.98142 0.94545 1.01981 1.22793 0.94477 0.99565 1.00378 1.22240 0.96601 0.82552 1.00203 1.22272 0.93235 1.00106 0.96853 1.20980 0.99722 0.91661 1.05911 1.22840 0.98812 0.87855 0.91064 1.68812 1.07029 1.26361 1.17829 0.90835 0.87992 0.88165 0.85582 0.85743 0.90098 0.90309 0.90424 0.89775 0.89792 0.90504 0.91579 0.90467 0.83511 0.86119 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -17.25 11.44 55.56 0.64 -16.62 16 2 C 0.06 1.42 5.50 -17.32 -0.10 1.32 16 3 Si 0.91 17.12 29.56 -169.99 -5.03 12.10 16 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 7 C -0.40 -9.84 9.12 -37.82 -0.34 -10.19 16 8 H 0.09 2.03 7.85 -52.49 -0.41 1.62 16 9 C 0.25 6.42 6.55 -84.98 -0.56 5.86 16 10 C -0.27 -6.24 9.76 -39.14 -0.38 -6.62 16 11 C -0.03 -0.65 9.46 -39.36 -0.37 -1.02 16 12 C -0.29 -6.20 5.92 -104.46 -0.62 -6.82 16 13 C 0.07 1.27 5.88 -104.82 -0.62 0.65 16 14 C -0.16 -2.87 9.40 -39.42 -0.37 -3.24 16 15 C -0.04 -0.70 9.55 -39.42 -0.38 -1.07 16 16 C -0.19 -3.12 5.88 -104.88 -0.62 -3.73 16 17 C 0.58 9.36 7.81 -12.39 -0.10 9.27 16 18 O -0.55 -10.49 16.68 5.30 0.09 -10.40 16 19 N -0.62 -7.60 3.34 -176.11 -0.59 -8.19 16 20 C 0.09 0.80 4.86 -3.07 -0.01 0.79 16 21 C -0.14 -0.82 6.95 -24.90 -0.17 -0.99 16 22 C -0.13 -0.86 7.09 -24.58 -0.17 -1.03 16 23 C 0.11 1.03 6.91 -2.35 -0.02 1.02 16 24 C -0.11 -1.55 8.55 -39.42 -0.34 -1.89 16 25 C -0.16 -2.67 9.40 -39.42 -0.37 -3.04 16 26 C 0.16 3.83 10.60 -17.12 -0.18 3.65 16 27 N -0.49 -12.81 7.83 -10.84 -0.08 -12.89 16 28 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 29 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.10 1.79 6.28 -52.49 -0.33 1.46 16 31 H 0.13 2.11 6.20 -52.48 -0.33 1.79 16 32 H 0.12 2.04 7.66 -52.49 -0.40 1.63 16 33 H 0.08 0.71 6.64 -51.93 -0.35 0.37 16 34 H 0.08 0.67 6.80 -51.93 -0.35 0.32 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.82 8.10 -51.93 -0.42 0.39 16 41 H 0.15 1.63 2.74 -58.55 -0.16 1.47 16 42 H 0.12 1.78 6.23 -52.48 -0.33 1.45 16 43 H 0.13 2.60 6.20 -52.49 -0.33 2.28 16 LS Contribution 351.13 15.07 5.29 5.29 Total: -1.00 -30.22 351.13 -10.47 -40.69 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.07 Total: 7.12 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -5.71 Total: -17.10 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.04 Total: -37.70 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.10 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.22 -10.47 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239895818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.354 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds