Wall clock time and date at job start Tue Mar 31 2020 13:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48499 * 109.46976 * 239.99480 * 3 2 1 5 5 H 1.48497 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46898 * 119.99534 * 3 2 1 7 7 C 1.40163 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.40983 * 119.99913 * 0.02562 * 7 2 1 10 10 C 1.40877 * 119.67457 * 180.02562 * 9 7 2 11 11 C 1.36691 * 119.25620 * 179.71526 * 10 9 7 12 12 C 1.40311 * 118.59544 * 0.50629 * 11 10 9 13 13 C 1.47870 * 120.34829 * 179.76968 * 12 11 10 14 14 C 1.39761 * 119.99793 * 179.72316 * 13 12 11 15 15 C 1.37118 * 119.99980 * 180.02562 * 14 13 12 16 16 C 1.39759 * 119.99804 * 359.97438 * 15 14 13 17 17 C 1.47727 * 120.00244 * 180.02562 * 16 15 14 18 18 O 1.21579 * 119.99634 * 7.98589 * 17 16 15 19 19 N 1.34769 * 120.00269 * 187.98633 * 17 16 15 20 20 C 1.47018 * 125.65196 * 354.73752 * 19 17 16 21 21 C 1.54320 * 107.40545 * 178.97702 * 20 19 17 22 22 C 1.55157 * 102.94330 * 337.72970 * 21 20 19 23 23 C 1.47744 * 125.81640 * 174.63121 * 19 17 16 24 24 C 1.39766 * 120.00030 * 0.27196 * 16 15 14 25 25 C 1.37114 * 119.99923 * 359.45420 * 24 16 15 26 26 C 1.40140 * 119.29925 * 359.49344 * 12 11 10 27 27 N 1.31167 * 120.68630 * 0.25673 * 26 12 11 28 28 H 0.96994 * 120.00073 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.37256 * 359.97438 * 10 9 7 30 30 H 1.07996 * 120.70319 * 180.25186 * 11 10 9 31 31 H 1.08003 * 120.00032 * 359.97438 * 14 13 12 32 32 H 1.07996 * 120.00012 * 180.02562 * 15 14 13 33 33 H 1.08999 * 109.88096 * 59.48265 * 20 19 17 34 34 H 1.09004 * 109.88182 * 298.47324 * 20 19 17 35 35 H 1.09003 * 110.71827 * 96.09147 * 21 20 19 36 36 H 1.08999 * 110.72404 * 219.36217 * 21 20 19 37 37 H 1.08997 * 111.00406 * 153.57334 * 22 21 20 38 38 H 1.08997 * 111.00273 * 277.42709 * 22 21 20 39 39 H 1.08992 * 110.28909 * 85.26236 * 23 19 17 40 40 H 1.09003 * 110.47578 * 323.02717 * 23 19 17 41 41 H 1.08004 * 119.99771 * 179.70477 * 24 16 15 42 42 H 1.08004 * 119.99988 * 180.25117 * 25 24 16 43 43 H 1.07997 * 119.65662 * 180.27440 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6964 -1.2124 5 1 1.2756 2.7464 -0.0006 6 1 3.0943 1.6965 1.2126 7 6 2.0077 -1.2138 0.0005 8 1 3.0876 -1.2138 0.0010 9 6 1.3028 -2.4348 0.0005 10 6 2.0141 -3.6508 0.0016 11 6 1.3221 -4.8295 0.0076 12 6 -0.0803 -4.7850 0.0015 13 6 -0.8676 -6.0367 0.0024 14 6 -2.2642 -5.9837 0.0022 15 6 -2.9943 -7.1444 0.0036 16 6 -2.3418 -8.3803 0.0047 17 6 -3.1282 -9.6308 0.0056 18 8 -4.3345 -9.5904 -0.1409 19 7 -2.5086 -10.8165 0.1689 20 6 -1.0547 -11.0200 0.2465 21 6 -0.8105 -12.5287 0.4607 22 6 -2.1559 -13.0168 1.0598 23 6 -3.1743 -12.1287 0.3020 24 6 -0.9451 -8.4332 0.0101 25 6 -0.2151 -7.2726 0.0031 26 6 -0.7270 -3.5417 0.0004 27 7 -0.0351 -2.4273 -0.0001 28 1 -0.4850 0.8400 -0.0004 29 1 3.0941 -3.6516 0.0021 30 1 1.8437 -5.7752 0.0126 31 1 -2.7684 -5.0286 0.0017 32 1 -4.0735 -7.1035 0.0030 33 1 -0.6456 -10.4557 1.0845 34 1 -0.5850 -10.6967 -0.6825 35 1 -0.6083 -13.0251 -0.4884 36 1 0.0063 -12.6912 1.1638 37 1 -2.3203 -14.0722 0.8426 38 1 -2.1966 -12.8295 2.1328 39 1 -3.3843 -12.5476 -0.6820 40 1 -4.0953 -12.0325 0.8771 41 1 -0.4409 -9.3883 0.0158 42 1 0.8642 -7.3135 0.0032 43 1 -1.8062 -3.5007 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239895818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:24 Heat of formation + Delta-G solvation = 26.704696 kcal Electronic energy + Delta-G solvation = -25289.473435 eV Core-core repulsion = 21685.138674 eV Total energy + Delta-G solvation = -3604.334760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.54922 -40.40463 -39.09866 -38.33382 -35.74805 -33.86889 -33.00068 -32.41088 -31.80321 -30.69271 -29.77805 -27.64756 -25.60011 -24.55594 -23.85609 -22.77102 -22.00733 -21.85770 -20.91691 -19.47628 -18.46551 -17.65797 -17.54549 -17.24693 -16.83660 -16.25574 -16.07972 -15.49579 -15.21894 -15.02799 -14.78411 -14.53705 -14.47322 -14.40187 -14.09209 -14.03883 -13.73528 -13.46605 -13.33481 -13.20361 -12.84524 -12.78447 -12.65369 -12.43759 -12.12052 -11.96929 -11.77543 -11.59689 -11.38729 -11.36092 -11.00674 -10.57053 -10.10806 -9.97387 -9.72036 -9.55882 -8.95210 -8.40784 -6.55023 -0.33956 0.53237 0.89136 1.18312 1.39580 1.50998 1.52841 1.91612 1.96472 2.17492 2.71789 3.07832 3.44214 3.61642 3.80038 3.90792 3.93750 4.01544 4.03766 4.09019 4.22850 4.27632 4.35617 4.44453 4.52796 4.54218 4.58861 4.80069 4.82995 4.88072 4.91623 4.95602 5.02312 5.08660 5.11593 5.14174 5.25257 5.33311 5.36622 5.42500 5.47562 5.49890 5.73235 5.93878 6.03566 6.05904 6.19940 6.40390 6.60074 6.84696 7.06114 8.08528 8.31197 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.035144 B = 0.002249 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.520258 B =12446.238080 C =13175.226940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.017 3.983 3 Si 0.992 3.008 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.439 4.439 8 H 0.099 0.901 9 C 0.217 3.783 10 C -0.287 4.287 11 C -0.031 4.031 12 C -0.278 4.278 13 C 0.039 3.961 14 C -0.163 4.163 15 C -0.055 4.055 16 C -0.187 4.187 17 C 0.573 3.427 18 O -0.591 6.591 19 N -0.617 5.617 20 C 0.074 3.926 21 C -0.126 4.126 22 C -0.124 4.124 23 C 0.095 3.905 24 C -0.095 4.095 25 C -0.154 4.154 26 C 0.136 3.864 27 N -0.524 5.524 28 H 0.284 0.716 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.189 0.811 42 H 0.145 0.855 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 -20.963 1.475 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.206 4.206 3 Si 0.812 3.188 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.179 1.179 7 C -0.469 4.469 8 H 0.117 0.883 9 C 0.094 3.906 10 C -0.309 4.309 11 C -0.054 4.054 12 C -0.283 4.283 13 C 0.037 3.963 14 C -0.181 4.181 15 C -0.074 4.074 16 C -0.190 4.190 17 C 0.365 3.635 18 O -0.474 6.474 19 N -0.349 5.349 20 C -0.047 4.047 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.026 4.026 24 C -0.113 4.113 25 C -0.172 4.172 26 C -0.032 4.032 27 N -0.237 5.237 28 H 0.095 0.905 29 H 0.137 0.863 30 H 0.157 0.843 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.205 0.795 42 H 0.162 0.838 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.971 -19.901 1.390 19.973 hybrid contribution 0.104 0.472 -0.075 0.489 sum 1.075 -19.429 1.315 19.504 Atomic orbital electron populations 1.70188 1.09209 1.29864 1.26908 1.27193 0.95788 1.05076 0.92577 0.85103 0.78587 0.74770 0.80386 1.17948 1.19346 1.17915 1.20198 0.95414 0.90369 1.40900 0.88267 1.19183 0.88946 0.93654 0.88845 1.21667 0.99925 0.93416 1.15875 1.21059 0.92838 0.97824 0.93648 1.19324 0.93921 0.92806 1.22248 1.19157 0.92667 0.92863 0.91565 1.21075 0.93525 0.98360 1.05124 1.20963 1.00002 0.91262 0.95182 1.19740 0.94612 0.92315 1.12353 1.18166 0.86324 0.83341 0.75659 1.90711 1.16183 1.87517 1.52950 1.48500 1.09046 1.06109 1.71286 1.22863 0.79710 0.99404 1.02755 1.22755 0.98337 0.91922 1.03302 1.22794 0.93432 1.00085 0.99891 1.22504 0.97152 0.82001 1.00982 1.22721 0.92265 1.01390 0.94879 1.21269 1.01012 0.90864 1.04041 1.23131 0.99423 0.88484 0.92138 1.68743 1.07850 1.27916 1.19158 0.90520 0.86334 0.84258 0.85791 0.85858 0.89397 0.89219 0.89062 0.87536 0.87380 0.90458 0.90970 0.92054 0.79495 0.83755 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.91 11.44 21.86 0.25 -38.66 16 2 C 0.02 0.85 5.50 85.33 0.47 1.32 16 3 Si 0.99 36.01 29.56 68.60 2.03 38.04 16 4 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 5 H -0.27 -9.38 7.11 99.48 0.71 -8.68 16 6 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 7 C -0.44 -22.67 9.12 23.41 0.21 -22.46 16 8 H 0.10 4.65 7.85 -2.91 -0.02 4.63 16 9 C 0.22 11.60 6.55 40.16 0.26 11.86 16 10 C -0.29 -13.25 9.76 22.55 0.22 -13.03 16 11 C -0.03 -1.26 9.46 22.41 0.21 -1.05 16 12 C -0.28 -11.88 5.92 -19.76 -0.12 -12.00 16 13 C 0.04 1.41 5.88 -19.99 -0.12 1.30 16 14 C -0.16 -5.78 9.40 22.37 0.21 -5.57 16 15 C -0.06 -1.86 9.55 22.37 0.21 -1.65 16 16 C -0.19 -5.74 5.88 -20.03 -0.12 -5.86 16 17 C 0.57 17.67 7.81 86.75 0.68 18.35 16 18 O -0.59 -22.61 16.68 -3.96 -0.07 -22.68 16 19 N -0.62 -13.47 3.34 -829.35 -2.77 -16.24 16 20 C 0.07 0.97 4.86 86.73 0.42 1.40 16 21 C -0.13 -0.86 6.95 31.78 0.22 -0.64 16 22 C -0.12 -1.08 7.09 31.99 0.23 -0.85 16 23 C 0.10 1.62 6.91 86.80 0.60 2.22 16 24 C -0.10 -2.42 8.55 22.37 0.19 -2.23 16 25 C -0.15 -4.49 9.40 22.37 0.21 -4.28 16 26 C 0.14 6.60 10.60 85.25 0.90 7.50 16 27 N -0.52 -28.89 7.83 -188.20 -1.47 -30.36 16 28 H 0.28 13.43 8.29 -92.71 -0.77 12.66 16 29 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 30 H 0.14 4.48 6.28 -2.91 -0.02 4.46 16 31 H 0.12 4.34 6.20 -2.91 -0.02 4.32 16 32 H 0.12 4.14 7.66 -2.91 -0.02 4.12 16 33 H 0.09 1.10 6.64 -2.39 -0.02 1.08 16 34 H 0.09 1.05 6.80 -2.38 -0.02 1.04 16 35 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 41 H 0.19 3.21 2.74 -8.61 -0.02 3.18 16 42 H 0.14 3.54 6.23 -2.91 -0.02 3.52 16 43 H 0.13 5.89 6.20 -2.91 -0.02 5.87 16 Total: -1.00 -70.47 351.13 3.91 -66.56 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: 1.04 Total: 29.00 kcal Atomic # 6 Polarization: -30.57 SS G_CDS: 4.90 Total: -25.67 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -3.99 Total: -85.26 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.07 Total: -22.68 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -70.47 3.91 -66.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239895818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.264 kcal (2) G-P(sol) polarization free energy of solvation -70.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds