Wall clock time and date at job start Tue Mar 31 2020 13:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86800 * 119.99769 * 2 1 4 4 H 1.48510 * 109.46865 * 269.99744 * 3 2 1 5 5 H 1.48498 * 109.47095 * 29.99533 * 3 2 1 6 6 H 1.48495 * 109.47004 * 150.00186 * 3 2 1 7 7 C 1.40243 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99916 * 184.30601 * 7 2 1 9 9 C 1.40918 * 119.99964 * 4.58280 * 7 2 1 10 10 C 1.41111 * 121.10743 * 324.89049 * 9 7 2 11 11 C 1.36521 * 119.10306 * 179.72424 * 10 9 7 12 12 N 1.32201 * 121.51804 * 0.56767 * 11 10 9 13 13 C 1.31664 * 122.50759 * 359.70604 * 12 11 10 14 14 C 1.39351 * 120.65821 * 359.97438 * 13 12 11 15 15 C 1.47747 * 120.78578 * 180.02562 * 14 13 12 16 16 C 1.39809 * 120.00169 * 129.70851 * 15 14 13 17 17 C 1.37106 * 119.99356 * 179.69620 * 16 15 14 18 18 C 1.39774 * 119.99980 * 0.57698 * 17 16 15 19 19 C 1.47711 * 119.99317 * 179.69421 * 18 17 16 20 20 O 1.21575 * 119.99735 * 187.48461 * 19 18 17 21 21 N 1.34778 * 120.00151 * 7.48624 * 19 18 17 22 22 C 1.47023 * 125.64590 * 353.95196 * 21 19 18 23 23 C 1.54314 * 107.27468 * 180.96725 * 22 21 19 24 24 C 1.55154 * 102.86184 * 22.52567 * 23 22 21 25 25 C 1.47425 * 125.64886 * 174.25758 * 21 19 18 26 26 C 1.39778 * 120.01407 * 359.72386 * 18 17 16 27 27 C 1.37093 * 120.00064 * 359.97064 * 26 18 17 28 28 H 0.96998 * 120.00195 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.45146 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.23879 * 180.27611 * 11 10 9 31 31 H 1.08004 * 119.67208 * 179.97438 * 13 12 11 32 32 H 1.08001 * 120.00522 * 359.97438 * 16 15 14 33 33 H 1.07996 * 119.99743 * 180.27808 * 17 16 15 34 34 H 1.09003 * 109.88323 * 300.51264 * 22 21 19 35 35 H 1.09004 * 109.88010 * 61.67821 * 22 21 19 36 36 H 1.08999 * 110.92385 * 264.10739 * 23 22 21 37 37 H 1.09000 * 110.59108 * 140.78666 * 23 22 21 38 38 H 1.09003 * 111.00199 * 206.22977 * 24 23 22 39 39 H 1.08999 * 111.00680 * 82.38112 * 24 23 22 40 40 H 1.08996 * 110.36352 * 274.67100 * 25 21 19 41 41 H 1.08991 * 110.36602 * 36.88775 * 25 21 19 42 42 H 1.08000 * 120.00067 * 179.97438 * 26 18 17 43 43 H 1.08000 * 120.00097 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0464 -1.4002 5 1 1.4377 2.6527 0.6999 6 1 3.5379 1.4402 0.7000 7 6 2.0077 -1.2145 0.0005 8 1 3.0854 -1.2157 0.0708 9 6 1.3066 -2.4330 -0.0964 10 6 0.0411 -2.5959 0.5064 11 6 -0.6046 -3.7923 0.3819 12 7 -0.0667 -4.8024 -0.2800 13 6 1.1119 -4.7200 -0.8611 14 6 1.8531 -3.5416 -0.8007 15 6 3.1757 -3.4458 -1.4523 16 6 3.4605 -2.3726 -2.3018 17 6 4.6900 -2.2806 -2.9015 18 6 5.6544 -3.2661 -2.6730 19 6 6.9767 -3.1704 -3.3245 20 8 7.7655 -4.0914 -3.2369 21 7 7.3086 -2.0622 -4.0160 22 6 6.4126 -0.9335 -4.3072 23 6 7.2167 0.0868 -5.1400 24 6 8.3428 -0.7831 -5.7584 25 6 8.6284 -1.7839 -4.6111 26 6 5.3678 -4.3426 -1.8287 27 6 4.1406 -4.4316 -1.2240 28 1 -0.4850 0.8400 -0.0004 29 1 -0.4123 -1.7839 1.0554 30 1 -1.5752 -3.9180 0.8386 31 1 1.5082 -5.5744 -1.3899 32 1 2.7136 -1.6136 -2.4821 33 1 4.9116 -1.4492 -3.5541 34 1 5.5504 -1.2818 -4.8759 35 1 6.0834 -0.4719 -3.3762 36 1 7.6365 0.8650 -4.5026 37 1 6.5924 0.5214 -5.9207 38 1 9.2242 -0.1813 -5.9803 39 1 7.9910 -1.3013 -6.6505 40 1 9.2907 -1.3342 -3.8715 41 1 9.0676 -2.7003 -5.0053 42 1 6.1130 -5.1042 -1.6527 43 1 3.9192 -5.2631 -0.5713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239896457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:52 Heat of formation + Delta-G solvation = 20.122039 kcal Electronic energy + Delta-G solvation = -26289.891129 eV Core-core repulsion = 22685.270923 eV Total energy + Delta-G solvation = -3604.620206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.57525 -40.49035 -39.09639 -38.33754 -36.02341 -34.09312 -32.87226 -32.09020 -31.82018 -30.46205 -29.58353 -27.91735 -25.90283 -24.04701 -23.88206 -23.03534 -21.96946 -21.91187 -20.88886 -19.47331 -18.37263 -17.63265 -17.52983 -17.13587 -16.74137 -16.41885 -16.08490 -15.66479 -15.44222 -15.10853 -14.74852 -14.59683 -14.45126 -14.28209 -14.16807 -14.01523 -13.89607 -13.45287 -13.37156 -13.22011 -12.97786 -12.90701 -12.66618 -12.32220 -12.12876 -11.94478 -11.77174 -11.61464 -11.41715 -11.25133 -11.01547 -10.31708 -9.96364 -9.87597 -9.73594 -9.69082 -9.11085 -8.60661 -6.57196 -0.23389 0.55810 0.83511 0.98089 1.40180 1.52411 1.53032 1.85260 1.93931 2.18916 2.77647 2.95344 3.41769 3.59613 3.64381 3.82523 3.93665 4.03628 4.06668 4.07630 4.17025 4.26604 4.43749 4.47932 4.54657 4.59100 4.62386 4.82874 4.88875 4.92565 4.95474 4.97949 5.01892 5.12389 5.13885 5.24168 5.27165 5.32502 5.35148 5.47088 5.49585 5.53071 5.78913 5.93218 6.05465 6.16616 6.37665 6.49748 6.76739 6.80756 7.04218 7.64884 8.27309 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.004196 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.376940 B = 6672.007697 C = 8482.057799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.040 3.960 3 Si 0.977 3.023 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.219 4.219 11 C 0.076 3.924 12 N -0.582 5.582 13 C 0.118 3.882 14 C -0.236 4.236 15 C 0.031 3.969 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.169 4.169 19 C 0.575 3.425 20 O -0.585 6.585 21 N -0.616 5.616 22 C 0.073 3.927 23 C -0.127 4.127 24 C -0.122 4.122 25 C 0.095 3.905 26 C -0.062 4.062 27 C -0.139 4.139 28 H 0.291 0.709 29 H 0.124 0.876 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.182 0.818 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.131 0.869 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.158 6.458 -10.014 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.177 4.177 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.491 4.491 8 H 0.097 0.903 9 C 0.112 3.888 10 C -0.242 4.242 11 C -0.073 4.073 12 N -0.296 5.296 13 C -0.040 4.040 14 C -0.241 4.241 15 C 0.030 3.970 16 C -0.133 4.133 17 C -0.129 4.129 18 C -0.172 4.172 19 C 0.366 3.634 20 O -0.467 6.467 21 N -0.348 5.348 22 C -0.048 4.048 23 C -0.165 4.165 24 C -0.160 4.160 25 C -0.027 4.027 26 C -0.081 4.081 27 C -0.157 4.157 28 H 0.102 0.898 29 H 0.141 0.859 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.140 0.860 33 H 0.199 0.801 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.829 5.302 -9.956 16.346 hybrid contribution 0.193 1.069 0.587 1.235 sum 12.023 6.371 -9.369 16.520 Atomic orbital electron populations 1.69720 1.08884 1.30847 1.35111 1.26777 0.95554 1.04256 0.91094 0.85244 0.78905 0.75844 0.80244 1.17461 1.19418 1.18466 1.19610 0.94889 0.90258 1.44378 0.90295 1.18154 0.91726 0.91909 0.86992 1.22164 0.98990 0.98136 1.04869 1.22154 0.99063 0.89704 0.96355 1.67387 1.13987 1.32475 1.15771 1.22545 0.90419 0.95464 0.95565 1.19960 0.98042 0.97590 1.08490 1.19004 0.91972 0.93529 0.92477 1.21218 0.97277 0.97980 0.96818 1.22692 0.91974 0.99119 0.99149 1.19806 0.94466 0.99022 1.03881 1.18108 0.86566 0.80914 0.77765 1.90704 1.53593 1.38911 1.63505 1.48429 1.14677 1.18418 1.53293 1.22839 0.94047 0.87098 1.00810 1.22758 0.97302 0.96665 0.99741 1.22786 1.00302 0.96608 0.96329 1.22466 0.84230 0.99841 0.96143 1.20993 0.96290 0.96558 0.94248 1.21184 0.92888 0.99939 1.01693 0.89783 0.85856 0.84003 0.83605 0.86016 0.80126 0.89395 0.89936 0.89205 0.87650 0.87310 0.90290 0.90862 0.91600 0.85065 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.76 10.70 21.88 0.23 -38.52 16 2 C 0.04 1.79 5.44 85.36 0.46 2.25 16 3 Si 0.98 34.04 29.56 68.60 2.03 36.07 16 4 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 5 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 6 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 7 C -0.46 -22.22 7.01 23.41 0.16 -22.05 16 8 H 0.08 3.78 7.19 -2.91 -0.02 3.76 16 9 C 0.12 6.01 5.56 -20.92 -0.12 5.89 16 10 C -0.22 -10.96 8.71 22.57 0.20 -10.77 16 11 C 0.08 3.53 11.09 84.24 0.93 4.47 16 12 N -0.58 -27.32 10.32 -196.14 -2.02 -29.34 16 13 C 0.12 5.25 10.70 84.99 0.91 6.16 16 14 C -0.24 -10.83 5.53 -19.50 -0.11 -10.94 16 15 C 0.03 1.26 5.03 -20.00 -0.10 1.16 16 16 C -0.11 -4.24 8.25 22.38 0.18 -4.06 16 17 C -0.11 -3.46 8.57 22.38 0.19 -3.26 16 18 C -0.17 -5.58 5.88 -20.03 -0.12 -5.70 16 19 C 0.57 18.65 7.80 86.75 0.68 19.32 16 20 O -0.58 -22.58 16.58 -3.95 -0.07 -22.65 16 21 N -0.62 -14.94 3.33 -831.14 -2.77 -17.71 16 22 C 0.07 1.28 4.86 86.73 0.42 1.70 16 23 C -0.13 -1.32 6.95 31.78 0.22 -1.10 16 24 C -0.12 -1.32 7.08 31.98 0.23 -1.09 16 25 C 0.09 1.77 6.94 86.85 0.60 2.37 16 26 C -0.06 -2.13 9.55 22.37 0.21 -1.92 16 27 C -0.14 -5.02 9.50 22.38 0.21 -4.81 16 28 H 0.29 12.46 8.29 -92.71 -0.77 11.69 16 29 H 0.12 6.34 6.28 -2.91 -0.02 6.32 16 30 H 0.14 5.78 8.06 -2.91 -0.02 5.76 16 31 H 0.15 5.68 8.05 -2.91 -0.02 5.65 16 32 H 0.12 4.74 7.38 -2.91 -0.02 4.72 16 33 H 0.18 4.28 2.72 -8.97 -0.02 4.26 16 34 H 0.09 1.45 6.74 -2.39 -0.02 1.44 16 35 H 0.08 1.49 6.73 -2.39 -0.02 1.48 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.40 7.98 -2.39 -0.02 1.38 16 42 H 0.13 4.31 7.66 -2.91 -0.02 4.29 16 43 H 0.13 4.40 8.05 -2.91 -0.02 4.38 16 Total: -1.00 -62.91 352.10 3.61 -59.30 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 1.03 Total: 35.22 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 5.18 Total: -22.36 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -4.55 Total: -85.57 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.07 Total: -22.65 kcal Atomic # 14 Polarization: 34.04 SS G_CDS: 2.03 Total: 36.07 kcal Total: -62.91 3.61 -59.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239896457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.422 kcal (2) G-P(sol) polarization free energy of solvation -62.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds