Wall clock time and date at job start Tue Mar 31 2020 13:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 119.99961 * 2 1 4 4 H 1.48511 * 109.47125 * 274.96819 * 3 2 1 5 5 H 1.48501 * 109.47512 * 34.96662 * 3 2 1 6 6 H 1.48504 * 109.47498 * 154.96911 * 3 2 1 7 7 C 1.39940 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00170 * 193.94196 * 7 2 1 9 9 C 1.41445 * 119.99323 * 13.94560 * 7 2 1 10 10 C 1.40807 * 120.59843 * 204.55832 * 9 7 2 11 11 N 1.31504 * 120.68133 * 180.02562 * 10 9 7 12 12 C 1.31937 * 122.12470 * 359.97438 * 11 10 9 13 13 C 1.39714 * 121.14533 * 0.27630 * 12 11 10 14 14 C 1.48306 * 120.41683 * 179.72113 * 13 12 11 15 15 C 1.39491 * 119.97417 * 179.72943 * 14 13 12 16 16 C 1.37672 * 120.02480 * 179.72819 * 15 14 13 17 17 C 1.39708 * 119.97293 * 0.54093 * 16 15 14 18 18 C 1.47719 * 120.02380 * 179.74974 * 17 16 15 19 19 O 1.21575 * 119.99501 * 171.91901 * 18 17 16 20 20 N 1.34775 * 119.99986 * 351.91608 * 18 17 16 21 21 C 1.47018 * 125.64899 * 4.98876 * 20 18 17 22 22 C 1.54323 * 107.27519 * 180.96923 * 21 20 18 23 23 C 1.55157 * 102.86290 * 22.52157 * 22 21 20 24 24 C 1.47430 * 125.64357 * 185.29223 * 20 18 17 25 25 C 1.39709 * 119.94685 * 359.73019 * 17 16 15 26 26 C 1.37670 * 119.97327 * 359.97438 * 25 17 16 27 27 C 1.39254 * 119.16594 * 359.45286 * 13 12 11 28 28 H 0.97002 * 119.99862 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.66593 * 0.04220 * 10 9 7 30 30 H 1.07995 * 119.42255 * 180.02562 * 12 11 10 31 31 H 1.08007 * 119.98812 * 359.97438 * 15 14 13 32 32 H 1.07998 * 120.01220 * 180.29762 * 16 15 14 33 33 H 1.08997 * 109.88462 * 300.50916 * 21 20 18 34 34 H 1.08997 * 109.88311 * 61.67693 * 21 20 18 35 35 H 1.08997 * 110.91914 * 264.11031 * 22 21 20 36 36 H 1.08995 * 110.59257 * 140.78150 * 22 21 20 37 37 H 1.08994 * 111.00304 * 206.23012 * 23 22 21 38 38 H 1.08997 * 111.00091 * 82.38224 * 23 22 21 39 39 H 1.08998 * 110.36909 * 274.67199 * 24 20 18 40 40 H 1.08993 * 110.36571 * 36.89264 * 24 20 18 41 41 H 1.07997 * 120.00777 * 180.02562 * 25 17 16 42 42 H 1.08002 * 119.98146 * 180.02562 * 26 25 17 43 43 H 1.07998 * 120.95736 * 180.25811 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3848 2.1071 -1.3949 5 1 1.4962 2.6201 0.8024 6 1 3.5884 1.4122 0.5924 7 6 2.0080 -1.2119 0.0005 8 1 3.0641 -1.2255 0.2259 9 6 1.3320 -2.4189 -0.2942 10 6 1.8249 -3.6503 0.1785 11 7 1.1979 -4.7734 -0.0949 12 6 0.0924 -4.8026 -0.8143 13 6 -0.4661 -3.6299 -1.3290 14 6 -1.7061 -3.6821 -2.1409 15 6 -2.2588 -2.5049 -2.6454 16 6 -3.4067 -2.5527 -3.4039 17 6 -4.0244 -3.7797 -3.6587 18 6 -5.2592 -3.8317 -4.4678 19 8 -5.7148 -4.9046 -4.8131 20 7 -5.8807 -2.6898 -4.8230 21 6 -5.3871 -1.3293 -4.5641 22 6 -6.4362 -0.3466 -5.1255 23 6 -7.7300 -1.2025 -5.1555 24 6 -7.1712 -2.5980 -5.5299 25 6 -3.4729 -4.9574 -3.1480 26 6 -2.3216 -4.9077 -2.3950 27 6 0.1532 -2.4108 -1.0653 28 1 -0.4850 0.8401 -0.0004 29 1 2.7270 -3.6726 0.7719 30 1 -0.3870 -5.7499 -1.0122 31 1 -1.7838 -1.5560 -2.4443 32 1 -3.8318 -1.6417 -3.7985 33 1 -5.2692 -1.1756 -3.4915 34 1 -4.4331 -1.1787 -5.0694 35 1 -6.1660 -0.0208 -6.1300 36 1 -6.5550 0.5086 -4.4604 37 1 -8.4202 -0.8408 -5.9176 38 1 -8.2077 -1.2229 -4.1760 39 1 -7.0197 -2.6695 -6.6069 40 1 -7.8467 -3.3828 -5.1896 41 1 -3.9493 -5.9065 -3.3448 42 1 -1.8950 -5.8181 -2.0005 43 1 -0.2558 -1.4863 -1.4452 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239897154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:27 Heat of formation + Delta-G solvation = 18.801350 kcal Electronic energy + Delta-G solvation = -25766.889214 eV Core-core repulsion = 22162.211738 eV Total energy + Delta-G solvation = -3604.677475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.64551 -40.52294 -39.17678 -38.38756 -35.99360 -34.30184 -32.93493 -32.31763 -31.89875 -30.48822 -29.58161 -27.57915 -26.01660 -24.58645 -23.96591 -22.83697 -22.01283 -21.92933 -20.96013 -19.24529 -18.55729 -17.67660 -17.57889 -17.21257 -16.97759 -16.60667 -16.28704 -15.58715 -15.28081 -15.08814 -14.85630 -14.63568 -14.53919 -14.50176 -14.11267 -13.97606 -13.69846 -13.55650 -13.33275 -13.23554 -13.10993 -12.91934 -12.79227 -12.35544 -12.14328 -12.09698 -11.67341 -11.62315 -11.47896 -11.22489 -11.08701 -10.88075 -10.07131 -10.02922 -9.82062 -9.74161 -8.99761 -8.66642 -6.47901 -0.50177 0.40089 0.80113 1.02174 1.42066 1.52294 1.54888 1.83398 1.89165 2.19769 2.66084 2.93192 3.34673 3.57428 3.70341 3.71588 3.82398 3.89144 3.95147 4.05537 4.16675 4.24762 4.36729 4.40450 4.46953 4.52041 4.56384 4.74847 4.79051 4.82179 4.88915 4.93096 4.97889 5.09827 5.11766 5.13979 5.19153 5.21493 5.30238 5.35673 5.40870 5.49700 5.80944 5.85448 5.90536 6.00703 6.33283 6.45950 6.72312 6.75155 6.98634 7.64191 8.24754 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.003339 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.857755 B = 8382.879357 C =10359.566317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.477 4.477 8 H 0.085 0.915 9 C 0.033 3.967 10 C -0.036 4.036 11 N -0.482 5.482 12 C -0.031 4.031 13 C -0.100 4.100 14 C -0.005 4.005 15 C -0.128 4.128 16 C -0.106 4.106 17 C -0.158 4.158 18 C 0.573 3.427 19 O -0.582 6.582 20 N -0.615 5.615 21 C 0.073 3.927 22 C -0.126 4.126 23 C -0.124 4.124 24 C 0.096 3.904 25 C -0.062 4.062 26 C -0.127 4.127 27 C -0.129 4.129 28 H 0.294 0.706 29 H 0.136 0.864 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.187 0.813 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.849 6.387 -10.296 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.506 4.506 8 H 0.103 0.897 9 C 0.029 3.971 10 C -0.196 4.196 11 N -0.189 5.189 12 C -0.189 4.189 13 C -0.102 4.102 14 C -0.006 4.006 15 C -0.146 4.146 16 C -0.123 4.123 17 C -0.161 4.161 18 C 0.365 3.635 19 O -0.464 6.464 20 N -0.347 5.347 21 C -0.048 4.048 22 C -0.164 4.164 23 C -0.162 4.162 24 C -0.026 4.026 25 C -0.081 4.081 26 C -0.145 4.145 27 C -0.155 4.155 28 H 0.105 0.895 29 H 0.153 0.847 30 H 0.167 0.833 31 H 0.147 0.853 32 H 0.203 0.797 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.940 5.144 -10.131 17.984 hybrid contribution 0.360 0.944 0.118 1.017 sum -13.580 6.089 -10.013 17.938 Atomic orbital electron populations 1.69787 1.08850 1.31121 1.34432 1.26781 0.95644 1.04490 0.90947 0.85095 0.79037 0.75544 0.79546 1.18422 1.19126 1.18366 1.19857 0.97390 0.91231 1.42111 0.89671 1.18841 0.93202 0.94521 0.90550 1.22780 1.02785 0.88387 1.05638 1.66977 1.08341 1.31089 1.12465 1.22322 0.95775 0.97036 1.03742 1.19756 0.95629 0.94986 0.99808 1.19243 0.92813 0.94359 0.94229 1.21399 0.96689 0.98111 0.98405 1.22837 0.94254 0.99227 0.96004 1.19881 0.97275 0.95171 1.03813 1.18067 0.83618 0.82740 0.79103 1.90722 1.68010 1.29890 1.57765 1.48451 1.23179 1.05895 1.57166 1.22859 0.99293 0.80792 1.01893 1.22754 0.92977 0.97349 1.03332 1.22800 0.97753 0.92070 1.03570 1.22470 0.83546 0.99574 0.96965 1.21206 0.94262 0.98135 0.94467 1.21289 0.95833 0.97686 0.99703 1.22023 0.97636 0.96636 0.99207 0.89479 0.84683 0.83334 0.85289 0.79662 0.89708 0.89325 0.88930 0.87825 0.87262 0.90469 0.90719 0.91685 0.84429 0.84028 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.27 10.78 21.83 0.24 -38.04 16 2 C 0.04 1.72 5.24 85.25 0.45 2.17 16 3 Si 0.99 34.52 29.58 68.60 2.03 36.55 16 4 H -0.26 -8.73 7.11 99.48 0.71 -8.03 16 5 H -0.27 -8.88 7.11 99.48 0.71 -8.17 16 6 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 7 C -0.48 -23.87 9.10 23.47 0.21 -23.65 16 8 H 0.09 4.08 7.88 -2.91 -0.02 4.06 16 9 C 0.03 1.72 5.59 -21.22 -0.12 1.60 16 10 C -0.04 -1.80 10.96 85.37 0.94 -0.86 16 11 N -0.48 -23.74 10.32 -192.74 -1.99 -25.73 16 12 C -0.03 -1.40 10.60 85.03 0.90 -0.50 16 13 C -0.10 -4.52 5.88 -20.00 -0.12 -4.64 16 14 C -0.01 -0.20 5.88 -20.00 -0.12 -0.32 16 15 C -0.13 -4.38 9.42 22.44 0.21 -4.17 16 16 C -0.11 -2.97 8.57 22.49 0.19 -2.78 16 17 C -0.16 -4.83 5.87 -20.06 -0.12 -4.95 16 18 C 0.57 17.31 7.80 86.75 0.68 17.99 16 19 O -0.58 -21.29 16.66 -3.95 -0.07 -21.35 16 20 N -0.61 -13.64 3.33 -828.61 -2.76 -16.40 16 21 C 0.07 1.11 4.86 86.73 0.42 1.53 16 22 C -0.13 -1.10 6.95 31.78 0.22 -0.88 16 23 C -0.12 -1.19 7.08 31.99 0.23 -0.96 16 24 C 0.10 1.64 6.89 86.86 0.60 2.24 16 25 C -0.06 -1.96 9.58 22.49 0.22 -1.75 16 26 C -0.13 -4.29 9.42 22.44 0.21 -4.08 16 27 C -0.13 -6.42 8.16 23.16 0.19 -6.23 16 28 H 0.29 12.23 8.30 -92.71 -0.77 11.46 16 29 H 0.14 6.34 8.06 -2.91 -0.02 6.31 16 30 H 0.15 5.82 6.18 -2.91 -0.02 5.80 16 31 H 0.13 4.54 6.24 -2.91 -0.02 4.53 16 32 H 0.19 3.84 2.75 -8.02 -0.02 3.82 16 33 H 0.08 1.31 6.69 -2.39 -0.02 1.29 16 34 H 0.09 1.26 6.77 -2.39 -0.02 1.24 16 35 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 41 H 0.14 4.13 7.66 -2.91 -0.02 4.11 16 42 H 0.14 4.34 6.20 -2.91 -0.02 4.32 16 43 H 0.14 6.61 4.36 -2.91 -0.01 6.60 16 Total: -1.00 -64.97 349.74 3.69 -61.28 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 1.05 Total: 33.93 kcal Atomic # 6 Polarization: -35.43 SS G_CDS: 5.19 Total: -30.24 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -4.51 Total: -80.17 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.07 Total: -21.35 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 2.03 Total: 36.55 kcal Total: -64.97 3.69 -61.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239897154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.085 kcal (2) G-P(sol) polarization free energy of solvation -64.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds