Wall clock time and date at job start Tue Mar 31 2020 13:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86796 * 119.99995 * 2 1 4 4 H 1.48501 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47221 * 299.99826 * 3 2 1 6 6 H 1.48501 * 109.47194 * 60.00218 * 3 2 1 7 7 C 1.40052 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99979 * 184.55193 * 7 2 1 9 9 C 1.41524 * 119.99882 * 4.55884 * 7 2 1 10 10 C 1.41120 * 120.98938 * 325.43921 * 9 7 2 11 11 C 1.37796 * 119.07309 * 180.02562 * 10 9 7 12 12 N 1.31879 * 121.16139 * 0.02562 * 11 10 9 13 13 C 1.32819 * 122.20958 * 359.97438 * 12 11 10 14 14 C 1.48303 * 119.61327 * 180.28267 * 13 12 11 15 15 C 1.39483 * 119.97495 * 179.45267 * 14 13 12 16 16 C 1.37703 * 120.02335 * 179.76445 * 15 14 13 17 17 C 1.39679 * 119.97287 * 0.51242 * 16 15 14 18 18 C 1.47774 * 120.02119 * 179.72236 * 17 16 15 19 19 O 1.21560 * 120.00286 * 7.47578 * 18 17 16 20 20 N 1.34775 * 119.99888 * 187.47320 * 18 17 16 21 21 C 1.47016 * 125.65061 * 353.97032 * 20 18 17 22 22 C 1.54319 * 107.28164 * 180.96598 * 21 20 18 23 23 C 1.55161 * 102.85919 * 22.52037 * 22 21 20 24 24 C 1.47434 * 125.64824 * 174.27023 * 20 18 17 25 25 C 1.39679 * 119.95460 * 359.74192 * 17 16 15 26 26 C 1.37698 * 119.97559 * 0.02562 * 25 17 16 27 27 C 1.38916 * 120.76994 * 0.02562 * 13 12 11 28 28 H 0.97001 * 119.99714 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.46428 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.41964 * 180.02562 * 11 10 9 31 31 H 1.08001 * 119.99160 * 0.02562 * 15 14 13 32 32 H 1.07994 * 120.01482 * 180.25778 * 16 15 14 33 33 H 1.08998 * 109.88021 * 300.50657 * 21 20 18 34 34 H 1.09003 * 109.88783 * 61.67272 * 21 20 18 35 35 H 1.09007 * 110.92079 * 264.11007 * 22 21 20 36 36 H 1.08994 * 110.59202 * 140.77915 * 22 21 20 37 37 H 1.09001 * 111.00261 * 206.23434 * 23 22 21 38 38 H 1.08994 * 111.00149 * 82.38266 * 23 22 21 39 39 H 1.09002 * 110.36501 * 274.67792 * 24 20 18 40 40 H 1.08993 * 110.36517 * 36.89107 * 24 20 18 41 41 H 1.08004 * 120.00753 * 179.97438 * 25 17 16 42 42 H 1.07998 * 119.98807 * 179.97438 * 26 25 17 43 43 H 1.08006 * 120.61775 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3463 -0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0849 -1.2144 0.0748 9 6 1.3032 -2.4366 -0.0963 10 6 0.0330 -2.5929 0.4982 11 6 -0.6176 -3.8018 0.3799 12 7 -0.0735 -4.8082 -0.2762 13 6 1.1187 -4.7146 -0.8541 14 6 1.6733 -5.8810 -1.5830 15 6 2.9196 -5.7874 -2.2024 16 6 3.4377 -6.8713 -2.8753 17 6 2.7099 -8.0614 -2.9466 18 6 3.2622 -9.2233 -3.6737 19 8 4.4028 -9.1920 -4.0929 20 7 2.5012 -10.3179 -3.8721 21 6 1.1587 -10.5404 -3.3159 22 6 0.6915 -11.9330 -3.7891 23 6 2.0270 -12.6548 -4.1097 24 6 2.8799 -11.4931 -4.6778 25 6 1.4597 -8.1524 -2.3305 26 6 0.9456 -7.0688 -1.6540 27 6 1.8498 -3.5353 -0.7882 28 1 -0.4850 0.8401 0.0004 29 1 -0.4229 -1.7764 1.0385 30 1 -1.5901 -3.9274 0.8324 31 1 3.4803 -4.8658 -2.1506 32 1 4.4044 -6.8000 -3.3513 33 1 1.1990 -10.5112 -2.2271 34 1 0.4735 -9.7768 -3.6842 35 1 0.0722 -11.8529 -4.6826 36 1 0.1559 -12.4489 -2.9922 37 1 1.8802 -13.4338 -4.8578 38 1 2.4770 -13.0637 -3.2051 39 1 2.6414 -11.3257 -5.7282 40 1 3.9421 -11.7074 -4.5602 41 1 0.8960 -9.0720 -2.3854 42 1 -0.0213 -7.1387 -1.1779 43 1 2.8192 -3.4620 -1.2587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239897180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:29 Heat of formation + Delta-G solvation = 35.968988 kcal Electronic energy + Delta-G solvation = -25344.683927 eV Core-core repulsion = 21740.750897 eV Total energy + Delta-G solvation = -3603.933031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55278 -38.98524 -37.83206 -37.26703 -34.19909 -32.69801 -31.43595 -31.10082 -30.54661 -29.42877 -28.26840 -26.04906 -24.93420 -22.89677 -22.87242 -21.58023 -20.88241 -20.59052 -19.87701 -17.66809 -17.38008 -16.78663 -15.98942 -15.77729 -15.18659 -14.88443 -14.76178 -14.37898 -14.02667 -13.89877 -13.73773 -13.56226 -13.35471 -13.13637 -13.03602 -12.84838 -12.59061 -12.43681 -11.98172 -11.74856 -11.55506 -11.44533 -11.42351 -11.19060 -11.13246 -10.95083 -10.44732 -10.28181 -10.03065 -9.88415 -9.51129 -9.01973 -8.85964 -8.66887 -8.18740 -8.06543 -7.31816 -6.80427 -4.71829 0.89074 1.69904 2.51496 2.65666 2.81167 2.99835 3.02866 3.06504 3.25608 3.83259 4.12266 4.16355 4.20074 4.54782 4.64582 4.69729 4.87152 4.97581 5.05665 5.13267 5.23752 5.26135 5.37143 5.47487 5.49862 5.51180 5.59669 5.65744 5.73900 5.77921 5.95225 5.96970 6.17280 6.30888 6.48226 6.53208 6.60695 6.70429 6.79479 7.04086 7.08070 7.12366 7.25707 7.33678 7.36202 7.79678 7.98537 8.11779 8.34905 8.61696 8.68295 9.37072 10.08251 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.027747 B = 0.002403 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.862456 B =11651.113169 C =12522.616807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.121 3.879 10 C -0.192 4.192 11 C 0.082 3.918 12 N -0.552 5.552 13 C 0.134 3.866 14 C 0.020 3.980 15 C -0.123 4.123 16 C -0.060 4.060 17 C -0.154 4.154 18 C 0.580 3.420 19 O -0.543 6.543 20 N -0.619 5.619 21 C 0.089 3.911 22 C -0.136 4.136 23 C -0.134 4.134 24 C 0.105 3.895 25 C -0.129 4.129 26 C -0.105 4.105 27 C -0.233 4.233 28 H 0.281 0.719 29 H 0.137 0.863 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.154 0.846 42 H 0.138 0.862 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 -17.633 -5.609 18.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.145 4.145 3 Si 0.744 3.256 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.491 4.491 8 H 0.100 0.900 9 C 0.113 3.887 10 C -0.214 4.214 11 C -0.071 4.071 12 N -0.266 5.266 13 C 0.000 4.000 14 C 0.019 3.981 15 C -0.142 4.142 16 C -0.079 4.079 17 C -0.157 4.157 18 C 0.372 3.628 19 O -0.422 6.422 20 N -0.354 5.354 21 C -0.034 4.034 22 C -0.174 4.174 23 C -0.172 4.172 24 C -0.018 4.018 25 C -0.147 4.147 26 C -0.123 4.123 27 C -0.256 4.256 28 H 0.092 0.908 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.171 0.829 42 H 0.156 0.844 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.305 -18.168 -5.871 19.095 hybrid contribution 0.633 1.806 0.048 1.914 sum 0.328 -16.362 -5.823 17.371 Atomic orbital electron populations 1.69693 1.07484 1.29211 1.36581 1.25941 0.94982 1.01488 0.92065 0.86075 0.80633 0.80323 0.78616 1.18373 1.19771 1.19751 1.19584 0.94941 0.89716 1.44858 0.90044 1.17853 0.91912 0.91786 0.87133 1.22567 0.98296 0.97489 1.03051 1.22063 0.98295 0.89855 0.96875 1.67226 1.11922 1.32798 1.14690 1.19124 0.91924 0.91474 0.97453 1.19109 0.92801 0.92888 0.93325 1.21297 0.95711 0.98996 0.98199 1.21067 0.99076 0.91167 0.96576 1.19669 0.97001 0.94487 1.04552 1.18123 0.84371 0.81389 0.78950 1.90745 1.17630 1.81622 1.52155 1.48319 1.17709 1.17985 1.51338 1.22585 0.84330 0.97579 0.98887 1.22743 0.97565 0.94688 1.02396 1.22796 0.95466 0.97076 1.01893 1.22224 1.00361 0.84260 0.94914 1.22562 0.94943 1.00531 0.96642 1.21299 1.00635 0.91748 0.98639 1.22092 1.02005 0.95136 1.06345 0.90762 0.84581 0.85696 0.84774 0.85078 0.90040 0.89955 0.90275 0.89712 0.89743 0.90491 0.91427 0.90247 0.82919 0.84409 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.87 10.67 55.55 0.59 -19.27 16 2 C 0.07 1.74 5.44 -17.34 -0.09 1.65 16 3 Si 0.92 18.09 29.56 -169.99 -5.03 13.06 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.46 -11.63 9.10 -37.65 -0.34 -11.97 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 9 C 0.12 3.10 5.57 -106.56 -0.59 2.51 16 10 C -0.19 -4.76 8.77 -38.65 -0.34 -5.10 16 11 C 0.08 1.88 11.15 -17.69 -0.20 1.69 16 12 N -0.55 -12.64 9.38 -9.95 -0.09 -12.73 16 13 C 0.13 3.00 6.72 -83.05 -0.56 2.44 16 14 C 0.02 0.38 5.88 -104.83 -0.62 -0.24 16 15 C -0.12 -2.13 9.39 -39.31 -0.37 -2.50 16 16 C -0.06 -0.97 9.58 -39.24 -0.38 -1.34 16 17 C -0.15 -2.37 5.88 -104.92 -0.62 -2.98 16 18 C 0.58 8.81 7.80 -12.36 -0.10 8.71 16 19 O -0.54 -9.84 16.59 5.31 0.09 -9.75 16 20 N -0.62 -7.13 3.33 -176.42 -0.59 -7.71 16 21 C 0.09 0.74 4.86 -3.07 -0.01 0.72 16 22 C -0.14 -0.76 6.95 -24.90 -0.17 -0.94 16 23 C -0.13 -0.80 7.08 -24.58 -0.17 -0.97 16 24 C 0.10 0.95 6.94 -2.52 -0.02 0.93 16 25 C -0.13 -1.81 8.60 -39.24 -0.34 -2.15 16 26 C -0.10 -1.74 9.55 -39.32 -0.38 -2.11 16 27 C -0.23 -5.50 9.25 -38.33 -0.35 -5.85 16 28 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 29 H 0.14 3.45 6.23 -52.49 -0.33 3.13 16 30 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 31 H 0.13 2.22 6.15 -52.49 -0.32 1.89 16 32 H 0.13 2.00 7.66 -52.49 -0.40 1.60 16 33 H 0.08 0.65 6.74 -51.93 -0.35 0.30 16 34 H 0.08 0.67 6.73 -51.93 -0.35 0.32 16 35 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.80 7.98 -51.93 -0.41 0.38 16 41 H 0.15 1.63 2.73 -58.63 -0.16 1.47 16 42 H 0.14 2.26 7.51 -52.49 -0.39 1.87 16 43 H 0.11 2.34 6.17 -52.48 -0.32 2.02 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -29.95 352.18 -10.49 -40.44 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.13 Total: 8.17 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -5.65 Total: -17.51 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.09 Total: -39.72 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.95 -10.49 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239897180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.408 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds