Wall clock time and date at job start Tue Mar 31 2020 13:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86796 * 119.99995 * 2 1 4 4 H 1.48501 * 109.47125 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47221 * 299.99826 * 3 2 1 6 6 H 1.48501 * 109.47194 * 60.00218 * 3 2 1 7 7 C 1.40052 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99979 * 184.55193 * 7 2 1 9 9 C 1.41524 * 119.99882 * 4.55884 * 7 2 1 10 10 C 1.41120 * 120.98938 * 325.43921 * 9 7 2 11 11 C 1.37796 * 119.07309 * 180.02562 * 10 9 7 12 12 N 1.31879 * 121.16139 * 0.02562 * 11 10 9 13 13 C 1.32819 * 122.20958 * 359.97438 * 12 11 10 14 14 C 1.48303 * 119.61327 * 180.28267 * 13 12 11 15 15 C 1.39483 * 119.97495 * 179.45267 * 14 13 12 16 16 C 1.37703 * 120.02335 * 179.76445 * 15 14 13 17 17 C 1.39679 * 119.97287 * 0.51242 * 16 15 14 18 18 C 1.47774 * 120.02119 * 179.72236 * 17 16 15 19 19 O 1.21560 * 120.00286 * 7.47578 * 18 17 16 20 20 N 1.34775 * 119.99888 * 187.47320 * 18 17 16 21 21 C 1.47016 * 125.65061 * 353.97032 * 20 18 17 22 22 C 1.54319 * 107.28164 * 180.96598 * 21 20 18 23 23 C 1.55161 * 102.85919 * 22.52037 * 22 21 20 24 24 C 1.47434 * 125.64824 * 174.27023 * 20 18 17 25 25 C 1.39679 * 119.95460 * 359.74192 * 17 16 15 26 26 C 1.37698 * 119.97559 * 0.02562 * 25 17 16 27 27 C 1.38916 * 120.76994 * 0.02562 * 13 12 11 28 28 H 0.97001 * 119.99714 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.46428 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.41964 * 180.02562 * 11 10 9 31 31 H 1.08001 * 119.99160 * 0.02562 * 15 14 13 32 32 H 1.07994 * 120.01482 * 180.25778 * 16 15 14 33 33 H 1.08998 * 109.88021 * 300.50657 * 21 20 18 34 34 H 1.09003 * 109.88783 * 61.67272 * 21 20 18 35 35 H 1.09007 * 110.92079 * 264.11007 * 22 21 20 36 36 H 1.08994 * 110.59202 * 140.77915 * 22 21 20 37 37 H 1.09001 * 111.00261 * 206.23434 * 23 22 21 38 38 H 1.08994 * 111.00149 * 82.38266 * 23 22 21 39 39 H 1.09002 * 110.36501 * 274.67792 * 24 20 18 40 40 H 1.08993 * 110.36517 * 36.89107 * 24 20 18 41 41 H 1.08004 * 120.00753 * 179.97438 * 25 17 16 42 42 H 1.07998 * 119.98807 * 179.97438 * 26 25 17 43 43 H 1.08006 * 120.61775 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3463 -0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2129 0.0005 8 1 3.0849 -1.2144 0.0748 9 6 1.3032 -2.4366 -0.0963 10 6 0.0330 -2.5929 0.4982 11 6 -0.6176 -3.8018 0.3799 12 7 -0.0735 -4.8082 -0.2762 13 6 1.1187 -4.7146 -0.8541 14 6 1.6733 -5.8810 -1.5830 15 6 2.9196 -5.7874 -2.2024 16 6 3.4377 -6.8713 -2.8753 17 6 2.7099 -8.0614 -2.9466 18 6 3.2622 -9.2233 -3.6737 19 8 4.4028 -9.1920 -4.0929 20 7 2.5012 -10.3179 -3.8721 21 6 1.1587 -10.5404 -3.3159 22 6 0.6915 -11.9330 -3.7891 23 6 2.0270 -12.6548 -4.1097 24 6 2.8799 -11.4931 -4.6778 25 6 1.4597 -8.1524 -2.3305 26 6 0.9456 -7.0688 -1.6540 27 6 1.8498 -3.5353 -0.7882 28 1 -0.4850 0.8401 0.0004 29 1 -0.4229 -1.7764 1.0385 30 1 -1.5901 -3.9274 0.8324 31 1 3.4803 -4.8658 -2.1506 32 1 4.4044 -6.8000 -3.3513 33 1 1.1990 -10.5112 -2.2271 34 1 0.4735 -9.7768 -3.6842 35 1 0.0722 -11.8529 -4.6826 36 1 0.1559 -12.4489 -2.9922 37 1 1.8802 -13.4338 -4.8578 38 1 2.4770 -13.0637 -3.2051 39 1 2.6414 -11.3257 -5.7282 40 1 3.9421 -11.7074 -4.5602 41 1 0.8960 -9.0720 -2.3854 42 1 -0.0213 -7.1387 -1.1779 43 1 2.8192 -3.4620 -1.2587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239897180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:28 Heat of formation + Delta-G solvation = 20.515666 kcal Electronic energy + Delta-G solvation = -25345.354034 eV Core-core repulsion = 21740.750897 eV Total energy + Delta-G solvation = -3604.603137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.63413 -40.52761 -39.14107 -38.37077 -36.01017 -33.92664 -32.81153 -32.52749 -31.90615 -30.46025 -29.53415 -27.89449 -26.06866 -24.29337 -24.10651 -22.76816 -22.15394 -21.91791 -20.93738 -19.40978 -18.46671 -17.65501 -17.55149 -17.03990 -16.70775 -16.44941 -16.10765 -15.66642 -15.31794 -15.23161 -14.91366 -14.67690 -14.58124 -14.46804 -14.25061 -14.03673 -13.89271 -13.48879 -13.39314 -13.10020 -13.06081 -12.83748 -12.70386 -12.35703 -12.11679 -11.92146 -11.82910 -11.61022 -11.46189 -11.29168 -11.06047 -10.51456 -10.01368 -10.01025 -9.93594 -9.73947 -8.99071 -8.60931 -6.63771 -0.49407 0.40944 0.82316 0.95526 1.37993 1.47847 1.53532 1.83961 1.89667 2.18151 2.69209 2.93568 3.33389 3.49429 3.60126 3.66797 3.80428 3.90671 3.99544 4.07767 4.23314 4.26858 4.34532 4.44529 4.49133 4.58633 4.68609 4.81662 4.85168 4.86636 4.93774 4.95345 5.00281 5.05476 5.14065 5.19348 5.21121 5.23729 5.32313 5.39260 5.42453 5.46271 5.66495 5.86916 5.93338 6.14878 6.35041 6.46992 6.74113 6.80183 6.99652 7.55002 8.29363 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.027747 B = 0.002403 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.862456 B =11651.113169 C =12522.616807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.491 4.491 8 H 0.080 0.920 9 C 0.094 3.906 10 C -0.217 4.217 11 C 0.084 3.916 12 N -0.555 5.555 13 C 0.136 3.864 14 C -0.013 4.013 15 C -0.123 4.123 16 C -0.066 4.066 17 C -0.150 4.150 18 C 0.573 3.427 19 O -0.583 6.583 20 N -0.614 5.614 21 C 0.072 3.928 22 C -0.126 4.126 23 C -0.124 4.124 24 C 0.094 3.906 25 C -0.111 4.111 26 C -0.102 4.102 27 C -0.255 4.255 28 H 0.289 0.711 29 H 0.125 0.875 30 H 0.155 0.845 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.193 0.807 42 H 0.142 0.858 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 -19.825 -6.289 20.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.183 4.183 3 Si 0.812 3.188 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.522 4.522 8 H 0.098 0.902 9 C 0.086 3.914 10 C -0.239 4.239 11 C -0.070 4.070 12 N -0.269 5.269 13 C 0.003 3.997 14 C -0.014 4.014 15 C -0.142 4.142 16 C -0.085 4.085 17 C -0.153 4.153 18 C 0.364 3.636 19 O -0.464 6.464 20 N -0.347 5.347 21 C -0.049 4.049 22 C -0.164 4.164 23 C -0.162 4.162 24 C -0.027 4.027 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.277 4.277 28 H 0.100 0.900 29 H 0.142 0.858 30 H 0.172 0.828 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.209 0.791 42 H 0.160 0.840 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.257 -20.407 -6.548 21.469 hybrid contribution 0.897 2.263 0.176 2.440 sum -0.360 -18.145 -6.372 19.234 Atomic orbital electron populations 1.69753 1.08776 1.30555 1.36602 1.26823 0.95811 1.04544 0.91076 0.85002 0.79134 0.75691 0.78956 1.18177 1.19185 1.18684 1.19836 0.95126 0.90711 1.46550 0.90157 1.18243 0.92719 0.92699 0.87720 1.22529 0.98757 0.98160 1.04458 1.22487 0.99159 0.89131 0.96196 1.67356 1.12122 1.32523 1.14906 1.19596 0.91446 0.92219 0.96429 1.19098 0.94111 0.92953 0.95237 1.21281 0.95288 0.99432 0.98164 1.21149 0.99494 0.91325 0.96572 1.19919 0.97241 0.94387 1.03802 1.18081 0.84253 0.82255 0.79026 1.90724 1.19298 1.82496 1.53928 1.48439 1.18482 1.17291 1.50441 1.22886 0.82665 0.99903 0.99473 1.22755 0.97410 0.92564 1.03623 1.22795 0.94794 0.96206 1.02423 1.22481 1.00355 0.84631 0.95281 1.22948 0.94272 1.01086 0.94519 1.21401 1.00549 0.91457 0.98634 1.22261 1.02848 0.95477 1.07137 0.89969 0.85763 0.82760 0.84889 0.84655 0.89112 0.89302 0.89097 0.87541 0.87422 0.90384 0.90740 0.91772 0.79080 0.83996 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.99 10.67 21.84 0.23 -41.76 16 2 C 0.03 1.57 5.44 85.30 0.46 2.03 16 3 Si 0.99 37.33 29.56 68.60 2.03 39.36 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 5 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 6 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 7 C -0.49 -25.79 9.10 23.52 0.21 -25.57 16 8 H 0.08 4.07 7.85 -2.91 -0.02 4.04 16 9 C 0.09 5.02 5.57 -21.12 -0.12 4.90 16 10 C -0.22 -11.15 8.77 22.87 0.20 -10.95 16 11 C 0.08 3.86 11.15 84.58 0.94 4.80 16 12 N -0.55 -25.46 9.38 -185.38 -1.74 -27.20 16 13 C 0.14 6.24 6.72 41.84 0.28 6.52 16 14 C -0.01 -0.49 5.88 -20.00 -0.12 -0.61 16 15 C -0.12 -4.31 9.39 22.44 0.21 -4.10 16 16 C -0.07 -2.14 9.58 22.49 0.22 -1.92 16 17 C -0.15 -4.43 5.88 -20.06 -0.12 -4.55 16 18 C 0.57 16.76 7.80 86.77 0.68 17.43 16 19 O -0.58 -21.10 16.59 -3.90 -0.06 -21.17 16 20 N -0.61 -12.75 3.33 -830.34 -2.76 -15.51 16 21 C 0.07 0.92 4.86 86.73 0.42 1.34 16 22 C -0.13 -0.84 6.95 31.78 0.22 -0.62 16 23 C -0.12 -1.01 7.08 31.99 0.23 -0.78 16 24 C 0.09 1.51 6.94 86.85 0.60 2.11 16 25 C -0.11 -2.86 8.60 22.49 0.19 -2.66 16 26 C -0.10 -3.24 9.55 22.44 0.21 -3.03 16 27 C -0.25 -12.49 9.25 23.08 0.21 -12.27 16 28 H 0.29 13.19 8.29 -92.71 -0.77 12.42 16 29 H 0.12 6.58 6.23 -2.91 -0.02 6.56 16 30 H 0.16 6.02 8.06 -2.91 -0.02 5.99 16 31 H 0.13 4.57 6.15 -2.91 -0.02 4.55 16 32 H 0.14 4.20 7.66 -2.91 -0.02 4.17 16 33 H 0.09 1.05 6.74 -2.39 -0.02 1.04 16 34 H 0.09 1.09 6.73 -2.39 -0.02 1.07 16 35 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.23 7.98 -2.39 -0.02 1.21 16 41 H 0.19 3.36 2.73 -8.69 -0.02 3.33 16 42 H 0.14 4.40 7.51 -2.91 -0.02 4.38 16 43 H 0.12 5.31 6.17 -2.91 -0.02 5.29 16 Total: -1.00 -67.46 352.18 3.68 -63.78 By element: Atomic # 1 Polarization: 29.39 SS G_CDS: 1.04 Total: 30.42 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 4.95 Total: -27.93 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -4.27 Total: -84.47 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.06 Total: -21.17 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -67.46 3.68 -63.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239897180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.300 kcal (2) G-P(sol) polarization free energy of solvation -67.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds