Wall clock time and date at job start Tue Mar 31 2020 14:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86800 * 119.99567 * 2 1 4 4 H 1.48502 * 109.47134 * 240.00399 * 3 2 1 5 5 H 1.48497 * 109.47365 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47358 * 120.00109 * 3 2 1 7 7 C 1.40069 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99800 * 181.04473 * 7 2 1 9 9 C 1.40884 * 120.00070 * 1.04914 * 7 2 1 10 10 C 1.41129 * 120.71729 * 326.82243 * 9 7 2 11 11 C 1.36888 * 118.39178 * 180.26267 * 10 9 7 12 12 C 1.38867 * 119.79738 * 359.46689 * 11 10 9 13 13 N 1.31740 * 121.50548 * 0.27758 * 12 11 10 14 14 C 1.32567 * 121.72348 * 0.02562 * 13 12 11 15 15 C 1.47845 * 119.99519 * 180.02562 * 14 13 12 16 16 C 1.39782 * 120.07827 * 137.12676 * 15 14 13 17 17 C 1.38028 * 120.13413 * 179.70113 * 16 15 14 18 18 C 1.38144 * 120.30184 * 0.60134 * 17 16 15 19 19 C 1.39678 * 120.16227 * 359.67794 * 18 17 16 20 20 C 1.47869 * 120.06997 * 180.02562 * 19 18 17 21 21 O 1.21546 * 120.00205 * 171.60617 * 20 19 18 22 22 N 1.34779 * 120.00074 * 351.61335 * 20 19 18 23 23 C 1.47025 * 125.64708 * 5.31977 * 22 20 19 24 24 C 1.54314 * 107.27796 * 180.97049 * 23 22 20 25 25 C 1.55164 * 102.86274 * 22.52425 * 24 23 22 26 26 C 1.47425 * 125.65048 * 185.62859 * 22 20 19 27 27 C 1.39308 * 119.86292 * 0.02562 * 19 18 17 28 28 H 0.96994 * 120.00666 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.80609 * 0.03040 * 10 9 7 30 30 H 1.07998 * 120.10326 * 179.74285 * 11 10 9 31 31 H 1.08004 * 119.24527 * 180.25428 * 12 11 10 32 32 H 1.07996 * 119.93698 * 359.97438 * 16 15 14 33 33 H 1.07995 * 119.84822 * 180.27941 * 17 16 15 34 34 H 1.08001 * 119.91149 * 179.70032 * 18 17 16 35 35 H 1.09000 * 109.88007 * 300.51295 * 23 22 20 36 36 H 1.09000 * 109.88262 * 61.67606 * 23 22 20 37 37 H 1.09003 * 110.92542 * 264.11673 * 24 23 22 38 38 H 1.08996 * 110.59226 * 140.77866 * 24 23 22 39 39 H 1.09001 * 111.00463 * 206.23365 * 25 24 23 40 40 H 1.08996 * 111.00141 * 82.37624 * 25 24 23 41 41 H 1.09005 * 110.36382 * 274.67589 * 26 22 20 42 42 H 1.09003 * 110.36317 * 36.88498 * 26 22 20 43 43 H 1.07997 * 120.15180 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.0953 1.6966 -1.2126 5 1 1.2766 2.7465 -0.0006 6 1 3.0954 1.6966 1.2124 7 6 2.0081 -1.2130 -0.0005 8 1 3.0880 -1.2130 0.0165 9 6 1.3040 -2.4330 -0.0234 10 6 0.0537 -2.5559 0.6196 11 6 -0.5866 -3.7649 0.5721 12 6 -0.0058 -4.8271 -0.1081 13 7 1.1592 -4.7042 -0.7108 14 6 1.8338 -3.5631 -0.6977 15 6 3.1380 -3.4676 -1.3875 16 6 3.4433 -2.3405 -2.1558 17 6 4.6630 -2.2474 -2.7952 18 6 5.5847 -3.2712 -2.6909 19 6 5.2903 -4.4057 -1.9312 20 6 6.2785 -5.5001 -1.8205 21 8 6.0889 -6.4138 -1.0416 22 7 7.3897 -5.4845 -2.5832 23 6 7.7977 -4.3937 -3.4805 24 6 9.1136 -4.8272 -4.1600 25 6 9.0704 -6.3737 -4.0416 26 6 8.3939 -6.5611 -2.6606 27 6 4.0638 -4.5041 -1.2779 28 1 -0.4851 0.8399 0.0004 29 1 -0.3855 -1.7176 1.1399 30 1 -1.5427 -3.8909 1.0583 31 1 -0.5208 -5.7758 -0.1434 32 1 2.7252 -1.5389 -2.2457 33 1 4.8959 -1.3725 -3.3839 34 1 6.5352 -3.1939 -3.1977 35 1 7.0276 -4.2253 -4.2333 36 1 7.9624 -3.4825 -2.9054 37 1 9.9766 -4.4239 -3.6301 38 1 9.1241 -4.5207 -5.2059 39 1 10.0761 -6.7940 -4.0442 40 1 8.4643 -6.8095 -4.8358 41 1 9.1272 -6.4540 -1.8612 42 1 7.9100 -7.5361 -2.6026 43 1 3.8315 -5.3791 -0.6890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240053502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:35 Heat of formation + Delta-G solvation = 36.779484 kcal Electronic energy + Delta-G solvation = -26209.307114 eV Core-core repulsion = 22605.409229 eV Total energy + Delta-G solvation = -3603.897885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.34183 -38.85085 -37.63718 -37.07974 -34.19226 -32.58649 -31.40713 -30.77080 -30.28682 -29.61047 -28.23108 -25.78609 -24.68527 -23.02309 -22.18244 -21.53429 -21.15695 -20.45501 -19.50853 -17.47233 -17.05560 -16.65272 -16.01397 -15.74012 -15.32127 -14.75535 -14.59056 -14.35929 -13.95890 -13.90152 -13.71064 -13.39586 -13.35882 -12.83974 -12.71667 -12.54126 -12.37177 -12.11986 -11.76851 -11.57921 -11.48636 -11.45811 -11.33717 -11.12671 -11.02954 -10.78099 -10.69729 -10.35409 -9.94884 -9.67475 -9.42803 -8.73494 -8.68937 -8.34748 -8.15965 -8.07096 -7.37063 -6.86128 -4.60884 1.37872 1.81151 2.57844 2.87321 2.96014 2.98140 2.98631 3.11080 3.28064 3.78343 4.24795 4.31343 4.40346 4.54270 4.65602 4.88581 5.01139 5.10495 5.30177 5.34631 5.38618 5.45244 5.55036 5.55739 5.61208 5.64197 5.70942 5.87766 6.01092 6.06713 6.17453 6.19755 6.27214 6.45871 6.57733 6.69785 6.72604 6.86160 6.95430 7.01274 7.17947 7.33309 7.47875 7.55011 7.65995 7.79924 7.87041 8.32310 8.34260 8.56800 8.61680 9.49617 10.00702 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.003665 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.957030 B = 7637.522146 C = 9116.307942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.071 3.929 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.445 4.445 8 H 0.086 0.914 9 C 0.084 3.916 10 C -0.121 4.121 11 C -0.153 4.153 12 C -0.021 4.021 13 N -0.456 5.456 14 C 0.017 3.983 15 C 0.014 3.986 16 C -0.065 4.065 17 C -0.140 4.140 18 C -0.142 4.142 19 C -0.148 4.148 20 C 0.580 3.420 21 O -0.539 6.539 22 N -0.621 5.621 23 C 0.091 3.909 24 C -0.136 4.136 25 C -0.134 4.134 26 C 0.106 3.894 27 C -0.047 4.047 28 H 0.284 0.716 29 H 0.136 0.864 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.120 0.880 34 H 0.148 0.852 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.860 -1.872 -8.177 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.475 4.475 8 H 0.104 0.896 9 C 0.079 3.921 10 C -0.147 4.147 11 C -0.174 4.174 12 C -0.183 4.183 13 N -0.163 5.163 14 C -0.120 4.120 15 C 0.013 3.987 16 C -0.084 4.084 17 C -0.158 4.158 18 C -0.160 4.160 19 C -0.151 4.151 20 C 0.372 3.628 21 O -0.416 6.416 22 N -0.356 5.356 23 C -0.031 4.031 24 C -0.174 4.174 25 C -0.172 4.172 26 C -0.016 4.016 27 C -0.067 4.067 28 H 0.095 0.905 29 H 0.154 0.846 30 H 0.119 0.881 31 H 0.140 0.860 32 H 0.157 0.843 33 H 0.138 0.862 34 H 0.165 0.835 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.814 -2.908 -8.125 16.288 hybrid contribution -0.279 1.583 0.503 1.684 sum 13.535 -1.325 -7.622 15.590 Atomic orbital electron populations 1.69686 1.07524 1.29628 1.35650 1.25971 0.94934 1.01436 0.92286 0.86236 0.79958 0.79653 0.80331 1.18532 1.20176 1.18687 1.19507 0.95041 0.89587 1.43330 0.89620 1.18364 0.92452 0.92410 0.88853 1.21647 0.96828 0.96302 0.99933 1.21518 0.99683 0.95096 1.01078 1.21742 0.94309 0.98121 1.04087 1.67053 1.07250 1.25500 1.16543 1.19550 0.96133 0.91541 1.04781 1.18415 0.92347 0.92945 0.94987 1.21760 0.96355 0.97486 0.92771 1.20970 0.94462 0.98762 1.01586 1.22437 1.01129 0.93472 0.98998 1.19517 0.95681 0.95630 1.04284 1.18208 0.79705 0.85932 0.78999 1.90754 1.76418 1.37502 1.36944 1.48330 1.23078 1.19720 1.44454 1.22553 0.96497 0.90709 0.93379 1.22741 0.97185 0.96009 1.01467 1.22795 1.01298 0.96134 0.96972 1.22195 0.90682 0.91805 0.96959 1.21372 0.90692 0.98430 0.96158 0.90486 0.84641 0.88136 0.85980 0.84309 0.86163 0.83548 0.90043 0.90250 0.90427 0.89853 0.89844 0.90506 0.91570 0.90422 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.16 10.65 55.55 0.59 -18.56 16 2 C 0.07 1.65 5.41 -17.32 -0.09 1.56 16 3 Si 0.91 17.44 29.56 -169.99 -5.03 12.42 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 7 C -0.44 -10.87 6.48 -37.89 -0.25 -11.12 16 8 H 0.09 2.05 6.72 -52.49 -0.35 1.70 16 9 C 0.08 2.14 5.54 -106.41 -0.59 1.55 16 10 C -0.12 -3.02 8.72 -38.97 -0.34 -3.36 16 11 C -0.15 -3.50 10.03 -39.84 -0.40 -3.90 16 12 C -0.02 -0.50 11.16 -17.36 -0.19 -0.69 16 13 N -0.46 -11.41 10.13 -9.17 -0.09 -11.51 16 14 C 0.02 0.44 6.44 -82.23 -0.53 -0.09 16 15 C 0.01 0.31 5.29 -104.95 -0.56 -0.24 16 16 C -0.06 -1.29 7.93 -39.08 -0.31 -1.60 16 17 C -0.14 -2.26 10.02 -39.69 -0.40 -2.66 16 18 C -0.14 -2.18 8.59 -39.08 -0.34 -2.52 16 19 C -0.15 -2.72 5.87 -105.02 -0.62 -3.34 16 20 C 0.58 10.36 7.80 -12.32 -0.10 10.26 16 21 O -0.54 -11.47 16.67 5.32 0.09 -11.39 16 22 N -0.62 -8.27 3.33 -175.33 -0.58 -8.85 16 23 C 0.09 0.86 4.87 -3.07 -0.01 0.85 16 24 C -0.14 -0.88 6.95 -24.90 -0.17 -1.06 16 25 C -0.13 -0.95 7.08 -24.58 -0.17 -1.12 16 26 C 0.11 1.13 6.89 -2.53 -0.02 1.11 16 27 C -0.05 -1.00 9.19 -38.75 -0.36 -1.36 16 28 H 0.28 6.23 8.29 -40.82 -0.34 5.90 16 29 H 0.14 3.42 6.23 -52.49 -0.33 3.09 16 30 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 32 H 0.14 2.89 6.66 -52.49 -0.35 2.54 16 33 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 34 H 0.15 1.69 2.76 -57.30 -0.16 1.53 16 35 H 0.08 0.75 6.68 -51.93 -0.35 0.40 16 36 H 0.08 0.71 6.78 -51.93 -0.35 0.36 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 43 H 0.13 2.99 7.67 -52.49 -0.40 2.59 16 LS Contribution 350.72 15.07 5.29 5.29 Total: -1.00 -30.06 350.72 -10.40 -40.46 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.23 Total: 9.87 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -5.44 Total: -17.72 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: -0.08 Total: -38.92 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.06 -10.40 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240053502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.242 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds