Wall clock time and date at job start Tue Mar 31 2020 14:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86800 * 119.99567 * 2 1 4 4 H 1.48502 * 109.47134 * 240.00399 * 3 2 1 5 5 H 1.48497 * 109.47365 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47358 * 120.00109 * 3 2 1 7 7 C 1.40069 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99800 * 181.04473 * 7 2 1 9 9 C 1.40884 * 120.00070 * 1.04914 * 7 2 1 10 10 C 1.41129 * 120.71729 * 326.82243 * 9 7 2 11 11 C 1.36888 * 118.39178 * 180.26267 * 10 9 7 12 12 C 1.38867 * 119.79738 * 359.46689 * 11 10 9 13 13 N 1.31740 * 121.50548 * 0.27758 * 12 11 10 14 14 C 1.32567 * 121.72348 * 0.02562 * 13 12 11 15 15 C 1.47845 * 119.99519 * 180.02562 * 14 13 12 16 16 C 1.39782 * 120.07827 * 137.12676 * 15 14 13 17 17 C 1.38028 * 120.13413 * 179.70113 * 16 15 14 18 18 C 1.38144 * 120.30184 * 0.60134 * 17 16 15 19 19 C 1.39678 * 120.16227 * 359.67794 * 18 17 16 20 20 C 1.47869 * 120.06997 * 180.02562 * 19 18 17 21 21 O 1.21546 * 120.00205 * 171.60617 * 20 19 18 22 22 N 1.34779 * 120.00074 * 351.61335 * 20 19 18 23 23 C 1.47025 * 125.64708 * 5.31977 * 22 20 19 24 24 C 1.54314 * 107.27796 * 180.97049 * 23 22 20 25 25 C 1.55164 * 102.86274 * 22.52425 * 24 23 22 26 26 C 1.47425 * 125.65048 * 185.62859 * 22 20 19 27 27 C 1.39308 * 119.86292 * 0.02562 * 19 18 17 28 28 H 0.96994 * 120.00666 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.80609 * 0.03040 * 10 9 7 30 30 H 1.07998 * 120.10326 * 179.74285 * 11 10 9 31 31 H 1.08004 * 119.24527 * 180.25428 * 12 11 10 32 32 H 1.07996 * 119.93698 * 359.97438 * 16 15 14 33 33 H 1.07995 * 119.84822 * 180.27941 * 17 16 15 34 34 H 1.08001 * 119.91149 * 179.70032 * 18 17 16 35 35 H 1.09000 * 109.88007 * 300.51295 * 23 22 20 36 36 H 1.09000 * 109.88262 * 61.67606 * 23 22 20 37 37 H 1.09003 * 110.92542 * 264.11673 * 24 23 22 38 38 H 1.08996 * 110.59226 * 140.77866 * 24 23 22 39 39 H 1.09001 * 111.00463 * 206.23365 * 25 24 23 40 40 H 1.08996 * 111.00141 * 82.37624 * 25 24 23 41 41 H 1.09005 * 110.36382 * 274.67589 * 26 22 20 42 42 H 1.09003 * 110.36317 * 36.88498 * 26 22 20 43 43 H 1.07997 * 120.15180 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 3.0953 1.6966 -1.2126 5 1 1.2766 2.7465 -0.0006 6 1 3.0954 1.6966 1.2124 7 6 2.0081 -1.2130 -0.0005 8 1 3.0880 -1.2130 0.0165 9 6 1.3040 -2.4330 -0.0234 10 6 0.0537 -2.5559 0.6196 11 6 -0.5866 -3.7649 0.5721 12 6 -0.0058 -4.8271 -0.1081 13 7 1.1592 -4.7042 -0.7108 14 6 1.8338 -3.5631 -0.6977 15 6 3.1380 -3.4676 -1.3875 16 6 3.4433 -2.3405 -2.1558 17 6 4.6630 -2.2474 -2.7952 18 6 5.5847 -3.2712 -2.6909 19 6 5.2903 -4.4057 -1.9312 20 6 6.2785 -5.5001 -1.8205 21 8 6.0889 -6.4138 -1.0416 22 7 7.3897 -5.4845 -2.5832 23 6 7.7977 -4.3937 -3.4805 24 6 9.1136 -4.8272 -4.1600 25 6 9.0704 -6.3737 -4.0416 26 6 8.3939 -6.5611 -2.6606 27 6 4.0638 -4.5041 -1.2779 28 1 -0.4851 0.8399 0.0004 29 1 -0.3855 -1.7176 1.1399 30 1 -1.5427 -3.8909 1.0583 31 1 -0.5208 -5.7758 -0.1434 32 1 2.7252 -1.5389 -2.2457 33 1 4.8959 -1.3725 -3.3839 34 1 6.5352 -3.1939 -3.1977 35 1 7.0276 -4.2253 -4.2333 36 1 7.9624 -3.4825 -2.9054 37 1 9.9766 -4.4239 -3.6301 38 1 9.1241 -4.5207 -5.2059 39 1 10.0761 -6.7940 -4.0442 40 1 8.4643 -6.8095 -4.8358 41 1 9.1272 -6.4540 -1.8612 42 1 7.9100 -7.5361 -2.6026 43 1 3.8315 -5.3791 -0.6890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240053502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:34 Heat of formation + Delta-G solvation = 19.992378 kcal Electronic energy + Delta-G solvation = -26210.035058 eV Core-core repulsion = 22605.409229 eV Total energy + Delta-G solvation = -3604.625828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57387 -40.51279 -39.01067 -38.35695 -35.99942 -33.97766 -32.75415 -32.43113 -31.72787 -30.79256 -29.51810 -27.58168 -25.84829 -24.59341 -23.58632 -23.02367 -22.18329 -21.87783 -20.74969 -19.28695 -18.42717 -17.60588 -17.45371 -17.31404 -16.73426 -16.31360 -16.26052 -15.64083 -15.48745 -15.28654 -14.80545 -14.52591 -14.42700 -14.27119 -14.11318 -13.93769 -13.75644 -13.30811 -13.24429 -13.20058 -13.10764 -12.83632 -12.69765 -12.31158 -12.16276 -12.09940 -11.74700 -11.57844 -11.42798 -11.20209 -10.99512 -10.40839 -10.03576 -9.97597 -9.87775 -9.61854 -9.12198 -8.61909 -6.46560 -0.08834 0.23141 0.85218 1.11658 1.40663 1.51835 1.53474 1.82469 1.91729 2.19361 2.73556 2.94648 3.41613 3.61808 3.64071 3.78022 3.84510 4.07505 4.09245 4.18426 4.29104 4.41922 4.46073 4.50955 4.54672 4.60305 4.65121 4.78339 4.84412 4.87471 4.97309 4.99388 5.04761 5.07913 5.16188 5.19303 5.23211 5.27881 5.37937 5.47352 5.53912 5.72054 5.80713 5.95365 5.99412 6.07252 6.37547 6.47135 6.72853 6.77448 7.03493 7.63751 8.27507 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.003665 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.957030 B = 7637.522146 C = 9116.307942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.246 1.246 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.084 0.916 9 C 0.055 3.945 10 C -0.146 4.146 11 C -0.152 4.152 12 C -0.035 4.035 13 N -0.480 5.480 14 C 0.001 3.999 15 C -0.016 4.016 16 C -0.075 4.075 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.153 4.153 20 C 0.570 3.430 21 O -0.591 6.591 22 N -0.614 5.614 23 C 0.072 3.928 24 C -0.123 4.123 25 C -0.123 4.123 26 C 0.094 3.906 27 C -0.069 4.069 28 H 0.291 0.709 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.150 0.850 32 H 0.126 0.874 33 H 0.167 0.833 34 H 0.196 0.804 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.119 0.227 -10.756 20.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.169 1.169 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.102 0.898 9 C 0.051 3.949 10 C -0.172 4.172 11 C -0.172 4.172 12 C -0.195 4.195 13 N -0.188 5.188 14 C -0.137 4.137 15 C -0.017 4.017 16 C -0.094 4.094 17 C -0.141 4.141 18 C -0.134 4.134 19 C -0.156 4.156 20 C 0.362 3.638 21 O -0.473 6.473 22 N -0.346 5.346 23 C -0.049 4.049 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.028 4.028 27 C -0.089 4.089 28 H 0.102 0.898 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.168 0.832 32 H 0.144 0.856 33 H 0.185 0.815 34 H 0.212 0.788 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.100 -0.815 -10.747 20.213 hybrid contribution -1.224 0.847 1.255 1.947 sum 15.876 0.032 -9.492 18.497 Atomic orbital electron populations 1.69747 1.08949 1.30930 1.35586 1.26820 0.95636 1.04383 0.91149 0.85216 0.78769 0.75111 0.80678 1.16935 1.19343 1.18738 1.19607 0.94956 0.90049 1.44241 0.89839 1.18730 0.93241 0.93394 0.89519 1.21710 0.97497 0.96993 1.01002 1.21796 1.00636 0.94183 1.00549 1.22273 0.94068 0.99435 1.03729 1.67118 1.08169 1.26009 1.17528 1.20051 0.97368 0.91383 1.04900 1.18461 0.91783 0.94602 0.96827 1.21751 0.97967 0.96217 0.93499 1.21444 0.92429 1.00148 1.00112 1.23019 1.02517 0.91200 0.96713 1.19697 0.94641 0.97123 1.04145 1.18204 0.80938 0.85253 0.79423 1.90718 1.77859 1.39233 1.39491 1.48418 1.21659 1.21465 1.43083 1.22937 0.98682 0.90044 0.93263 1.22756 0.95598 0.94927 1.02810 1.22797 1.02104 0.97163 0.94052 1.22482 0.90160 0.90240 0.99932 1.21137 0.92607 0.97476 0.97692 0.89764 0.85479 0.84993 0.83222 0.85638 0.81516 0.78774 0.89033 0.88826 0.88920 0.87226 0.87310 0.90447 0.90942 0.92419 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.35 10.65 21.85 0.23 -40.12 16 2 C 0.04 1.64 5.41 85.29 0.46 2.10 16 3 Si 0.98 35.00 29.56 68.60 2.03 37.03 16 4 H -0.25 -8.12 7.11 99.48 0.71 -7.42 16 5 H -0.27 -9.17 7.11 99.48 0.71 -8.46 16 6 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 7 C -0.46 -23.21 6.48 23.36 0.15 -23.06 16 8 H 0.08 4.12 6.72 -2.91 -0.02 4.10 16 9 C 0.06 2.99 5.54 -21.02 -0.12 2.88 16 10 C -0.15 -7.63 8.72 22.66 0.20 -7.43 16 11 C -0.15 -7.13 10.03 22.10 0.22 -6.91 16 12 C -0.03 -1.67 11.16 84.86 0.95 -0.72 16 13 N -0.48 -25.48 10.13 -182.91 -1.85 -27.33 16 14 C 0.00 0.03 6.44 42.48 0.27 0.31 16 15 C -0.02 -0.75 5.29 -20.08 -0.11 -0.85 16 16 C -0.08 -3.00 7.93 22.59 0.18 -2.82 16 17 C -0.12 -3.63 10.02 22.20 0.22 -3.40 16 18 C -0.12 -3.23 8.59 22.60 0.19 -3.04 16 19 C -0.15 -5.64 5.87 -20.12 -0.12 -5.76 16 20 C 0.57 20.66 7.80 86.79 0.68 21.34 16 21 O -0.59 -26.72 16.67 -3.86 -0.06 -26.78 16 22 N -0.61 -15.29 3.33 -826.90 -2.75 -18.04 16 23 C 0.07 1.03 4.87 86.72 0.42 1.45 16 24 C -0.12 -0.93 6.95 31.78 0.22 -0.71 16 25 C -0.12 -1.26 7.08 31.99 0.23 -1.04 16 26 C 0.09 1.85 6.89 86.86 0.60 2.45 16 27 C -0.07 -3.15 9.19 22.81 0.21 -2.94 16 28 H 0.29 12.88 8.29 -92.71 -0.77 12.11 16 29 H 0.13 6.73 6.23 -2.91 -0.02 6.71 16 30 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 31 H 0.15 6.12 8.06 -2.91 -0.02 6.09 16 32 H 0.13 5.30 6.66 -2.91 -0.02 5.28 16 33 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 34 H 0.20 3.45 2.76 -7.43 -0.02 3.43 16 35 H 0.09 1.20 6.68 -2.39 -0.02 1.19 16 36 H 0.09 1.16 6.78 -2.39 -0.02 1.14 16 37 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 43 H 0.10 4.89 7.67 -2.91 -0.02 4.87 16 Total: -1.00 -72.98 350.72 3.49 -69.50 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 1.03 Total: 33.90 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 4.86 Total: -28.15 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -4.37 Total: -85.49 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.06 Total: -26.78 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 2.03 Total: 37.03 kcal Total: -72.98 3.49 -69.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240053502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.488 kcal (2) G-P(sol) polarization free energy of solvation -72.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds