Wall clock time and date at job start Tue Mar 31 2020 14:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86800 * 120.00347 * 2 1 4 4 H 1.48502 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46832 * 299.99220 * 3 2 1 6 6 H 1.48496 * 109.47131 * 59.99367 * 3 2 1 7 7 C 1.40034 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00415 * 186.23900 * 7 2 1 9 9 C 1.41055 * 119.99874 * 6.24338 * 7 2 1 10 10 C 1.41308 * 120.55482 * 25.96606 * 9 7 2 11 11 C 1.36610 * 118.41167 * 179.97438 * 10 9 7 12 12 C 1.39882 * 119.47120 * 359.97438 * 11 10 9 13 13 C 1.47975 * 119.45276 * 179.97438 * 12 11 10 14 14 C 1.39720 * 120.07620 * 5.00045 * 13 12 11 15 15 C 1.38034 * 120.15003 * 180.02562 * 14 13 12 16 16 C 1.38124 * 120.30006 * 0.27803 * 15 14 13 17 17 C 1.39684 * 120.14411 * 359.44799 * 16 15 14 18 18 C 1.47867 * 120.07425 * 180.27704 * 17 16 15 19 19 O 1.21550 * 119.99909 * 7.89239 * 18 17 16 20 20 N 1.34775 * 120.00014 * 187.89552 * 18 17 16 21 21 C 1.47026 * 125.64671 * 353.85153 * 20 18 17 22 22 C 1.54312 * 107.27443 * 180.96763 * 21 20 18 23 23 C 1.55161 * 102.86468 * 22.52638 * 22 21 20 24 24 C 1.47420 * 125.64974 * 174.15665 * 20 18 17 25 25 C 1.39324 * 119.84978 * 0.55008 * 17 16 15 26 26 N 1.33015 * 121.09574 * 0.26325 * 12 11 10 27 27 C 1.31271 * 121.73105 * 359.46710 * 26 12 11 28 28 H 0.97001 * 119.99238 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.79302 * 359.95591 * 10 9 7 30 30 H 1.08006 * 120.26323 * 179.97438 * 11 10 9 31 31 H 1.08010 * 119.92486 * 0.05004 * 14 13 12 32 32 H 1.08002 * 119.84868 * 180.02562 * 15 14 13 33 33 H 1.07994 * 119.92878 * 179.70103 * 16 15 14 34 34 H 1.08997 * 109.88046 * 300.51048 * 21 20 18 35 35 H 1.08999 * 109.88144 * 61.67866 * 21 20 18 36 36 H 1.08997 * 110.92901 * 264.11292 * 22 21 20 37 37 H 1.09000 * 110.58973 * 140.78046 * 22 21 20 38 38 H 1.09000 * 111.00596 * 206.22799 * 23 22 21 39 39 H 1.09000 * 111.00364 * 82.37689 * 23 22 21 40 40 H 1.08998 * 110.37180 * 274.67671 * 24 20 18 41 41 H 1.09000 * 110.36813 * 36.88738 * 24 20 18 42 42 H 1.08002 * 120.14410 * 179.74867 * 25 17 16 43 43 H 1.07997 * 119.80044 * 180.25135 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7020 1.3462 0.0006 5 1 1.8834 2.3963 -1.2126 6 1 1.8832 2.3964 1.2124 7 6 2.0080 -1.2127 0.0005 8 1 3.0832 -1.2156 0.1022 9 6 1.3090 -2.4307 -0.1318 10 6 0.0585 -2.4736 -0.7885 11 6 -0.5802 -3.6767 -0.8923 12 6 0.0154 -4.8210 -0.3516 13 6 -0.6771 -6.1239 -0.4637 14 6 -1.8634 -6.2257 -1.1947 15 6 -2.5110 -7.4402 -1.2999 16 6 -1.9949 -8.5611 -0.6794 17 6 -0.8066 -8.4748 0.0498 18 6 -0.2523 -9.6771 0.7083 19 8 -0.7476 -10.7672 0.4994 20 7 0.8021 -9.5641 1.5401 21 6 1.5745 -8.3368 1.7827 22 6 2.6939 -8.6903 2.7843 23 6 2.8428 -10.2247 2.6085 24 6 1.3760 -10.6522 2.3526 25 6 -0.1479 -7.2520 0.1600 26 7 1.1914 -4.7565 0.2667 27 6 1.8467 -3.6255 0.3876 28 1 -0.4849 0.8401 -0.0004 29 1 -0.3818 -1.5767 -1.1983 30 1 -1.5375 -3.7438 -1.3879 31 1 -2.2746 -5.3521 -1.6790 32 1 -3.4275 -7.5134 -1.8665 33 1 -2.5090 -9.5073 -0.7616 34 1 2.0091 -7.9816 0.8484 35 1 0.9275 -7.5698 2.2084 36 1 2.3955 -8.4462 3.8038 37 1 3.6201 -8.1803 2.5197 38 1 3.2314 -10.6861 3.5164 39 1 3.4737 -10.4604 1.7515 40 1 0.8379 -10.7456 3.2959 41 1 1.3437 -11.5932 1.8035 42 1 0.7690 -7.1790 0.7260 43 1 2.8014 -3.6097 0.8923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240054835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:39 Heat of formation + Delta-G solvation = 33.428168 kcal Electronic energy + Delta-G solvation = -25955.582425 eV Core-core repulsion = 22351.539216 eV Total energy + Delta-G solvation = -3604.043209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.37001 -38.85704 -37.77678 -37.10211 -34.37572 -32.35031 -31.70277 -30.97631 -30.41182 -29.12083 -28.80314 -25.62233 -24.80739 -22.87259 -22.51742 -21.52755 -21.15666 -20.58332 -19.29021 -17.62485 -17.17184 -16.59892 -16.21159 -15.65349 -15.49510 -14.97282 -14.62933 -14.36724 -14.00310 -13.71579 -13.68817 -13.48199 -13.15775 -12.90494 -12.79658 -12.73799 -12.41841 -12.00070 -11.87322 -11.83686 -11.53888 -11.40738 -11.31295 -11.28370 -10.95492 -10.86972 -10.74314 -10.23892 -9.95824 -9.74592 -9.67782 -8.86354 -8.65540 -8.56109 -8.43099 -8.24615 -7.37880 -6.99545 -4.68685 1.17182 1.57809 2.52113 2.85917 2.89806 2.94365 2.94949 3.01755 3.25733 3.67771 4.18015 4.35738 4.49368 4.56153 4.81416 4.87569 5.16550 5.18991 5.23944 5.28712 5.50119 5.52507 5.56454 5.61113 5.67144 5.72916 5.79870 5.85211 5.89676 5.97232 6.04005 6.17447 6.23735 6.36592 6.50958 6.59096 6.63449 6.75408 6.78565 6.85988 7.04811 7.15256 7.26578 7.53422 7.58911 7.67762 7.82344 8.23992 8.26929 8.44149 8.51461 9.40344 9.83148 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.003151 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.281716 B = 8884.968799 C =10463.836732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.067 3.933 3 Si 0.921 3.079 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.429 4.429 8 H 0.086 0.914 9 C 0.065 3.935 10 C -0.141 4.141 11 C -0.124 4.124 12 C -0.006 4.006 13 C 0.011 3.989 14 C -0.109 4.109 15 C -0.125 4.125 16 C -0.089 4.089 17 C -0.138 4.138 18 C 0.579 3.421 19 O -0.549 6.549 20 N -0.617 5.617 21 C 0.090 3.910 22 C -0.134 4.134 23 C -0.134 4.134 24 C 0.105 3.895 25 C -0.118 4.118 26 N -0.452 5.452 27 C -0.013 4.013 28 H 0.286 0.714 29 H 0.139 0.861 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.168 0.832 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.984 -9.219 2.782 9.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.152 4.152 3 Si 0.745 3.255 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.458 4.458 8 H 0.105 0.895 9 C 0.060 3.940 10 C -0.166 4.166 11 C -0.144 4.144 12 C -0.140 4.140 13 C 0.010 3.990 14 C -0.128 4.128 15 C -0.144 4.144 16 C -0.109 4.109 17 C -0.141 4.141 18 C 0.371 3.629 19 O -0.428 6.428 20 N -0.351 5.351 21 C -0.032 4.032 22 C -0.172 4.172 23 C -0.172 4.172 24 C -0.017 4.017 25 C -0.136 4.136 26 N -0.159 5.159 27 C -0.178 4.178 28 H 0.097 0.903 29 H 0.157 0.843 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.185 0.815 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.785 -10.388 2.972 10.951 hybrid contribution -0.191 1.794 -0.339 1.835 sum 1.594 -8.594 2.633 9.129 Atomic orbital electron populations 1.69724 1.07740 1.29745 1.33666 1.26112 0.95019 1.02033 0.92081 0.86031 0.80750 0.79880 0.78865 1.18092 1.19490 1.19598 1.19750 0.95616 0.89997 1.40437 0.89546 1.18668 0.92813 0.93681 0.88828 1.21642 0.97263 0.96921 1.00740 1.21350 0.99149 0.93630 1.00288 1.18735 0.94782 0.91115 1.09346 1.18673 0.93133 0.92377 0.94815 1.21459 0.95060 0.97637 0.98624 1.20903 1.00234 0.92498 1.00718 1.21055 0.94747 0.98733 0.96346 1.19680 0.98145 0.93082 1.03233 1.18135 0.78383 0.88780 0.77601 1.90716 1.60567 1.28284 1.63226 1.48363 1.31047 1.11859 1.43797 1.22618 0.93465 0.87300 0.99847 1.22722 0.98931 0.95862 0.99684 1.22801 0.95751 0.96086 1.02589 1.22215 0.93133 0.91328 0.95049 1.22874 1.01442 0.90522 0.98750 1.66869 1.06676 1.29587 1.12790 1.22474 1.00979 0.88463 1.05896 0.90306 0.84341 0.88042 0.85715 0.85942 0.85694 0.89562 0.89693 0.90393 0.89547 0.89850 0.90542 0.91508 0.90395 0.81519 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.22 10.47 55.55 0.58 -17.64 16 2 C 0.07 1.49 5.36 -17.32 -0.09 1.40 16 3 Si 0.92 16.70 29.57 -169.99 -5.03 11.68 16 4 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 5 H -0.27 -4.85 7.11 56.52 0.40 -4.44 16 6 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.43 -10.12 9.10 -37.84 -0.34 -10.46 16 8 H 0.09 1.92 7.85 -52.49 -0.41 1.50 16 9 C 0.06 1.57 5.61 -106.64 -0.60 0.97 16 10 C -0.14 -3.37 8.75 -39.00 -0.34 -3.71 16 11 C -0.12 -2.73 9.37 -39.55 -0.37 -3.10 16 12 C -0.01 -0.13 6.73 -82.75 -0.56 -0.69 16 13 C 0.01 0.21 5.87 -104.94 -0.62 -0.40 16 14 C -0.11 -1.83 9.41 -39.10 -0.37 -2.20 16 15 C -0.13 -1.89 10.02 -39.70 -0.40 -2.29 16 16 C -0.09 -1.45 9.59 -39.08 -0.37 -1.83 16 17 C -0.14 -2.40 5.87 -105.01 -0.62 -3.02 16 18 C 0.58 9.99 7.80 -12.32 -0.10 9.90 16 19 O -0.55 -10.65 16.59 5.32 0.09 -10.56 16 20 N -0.62 -8.84 3.33 -175.67 -0.58 -9.43 16 21 C 0.09 1.15 4.86 -3.07 -0.01 1.14 16 22 C -0.13 -1.28 6.95 -24.90 -0.17 -1.45 16 23 C -0.13 -1.16 7.08 -24.58 -0.17 -1.33 16 24 C 0.11 1.19 6.94 -2.53 -0.02 1.17 16 25 C -0.12 -2.12 8.13 -38.77 -0.32 -2.43 16 26 N -0.45 -10.07 9.39 -9.10 -0.09 -10.15 16 27 C -0.01 -0.29 10.97 -16.77 -0.18 -0.48 16 28 H 0.29 5.99 8.29 -40.82 -0.34 5.65 16 29 H 0.14 3.38 5.91 -52.49 -0.31 3.07 16 30 H 0.10 1.96 6.17 -52.48 -0.32 1.64 16 31 H 0.13 1.93 6.17 -52.48 -0.32 1.61 16 32 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.13 1.91 7.66 -52.49 -0.40 1.51 16 34 H 0.09 1.19 6.75 -51.93 -0.35 0.84 16 35 H 0.09 1.19 6.74 -51.93 -0.35 0.84 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 0.92 7.98 -51.93 -0.41 0.51 16 42 H 0.17 2.86 2.22 -57.72 -0.13 2.73 16 43 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -27.85 351.65 -10.49 -38.34 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -5.11 Total: 11.26 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -5.65 Total: -18.80 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: -0.09 Total: -37.22 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.68 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.85 -10.49 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240054835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.767 kcal (2) G-P(sol) polarization free energy of solvation -27.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds