Wall clock time and date at job start Tue Mar 31 2020 14:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86800 * 120.00347 * 2 1 4 4 H 1.48502 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46832 * 299.99220 * 3 2 1 6 6 H 1.48496 * 109.47131 * 59.99367 * 3 2 1 7 7 C 1.40034 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00415 * 186.23900 * 7 2 1 9 9 C 1.41055 * 119.99874 * 6.24338 * 7 2 1 10 10 C 1.41308 * 120.55482 * 25.96606 * 9 7 2 11 11 C 1.36610 * 118.41167 * 179.97438 * 10 9 7 12 12 C 1.39882 * 119.47120 * 359.97438 * 11 10 9 13 13 C 1.47975 * 119.45276 * 179.97438 * 12 11 10 14 14 C 1.39720 * 120.07620 * 5.00045 * 13 12 11 15 15 C 1.38034 * 120.15003 * 180.02562 * 14 13 12 16 16 C 1.38124 * 120.30006 * 0.27803 * 15 14 13 17 17 C 1.39684 * 120.14411 * 359.44799 * 16 15 14 18 18 C 1.47867 * 120.07425 * 180.27704 * 17 16 15 19 19 O 1.21550 * 119.99909 * 7.89239 * 18 17 16 20 20 N 1.34775 * 120.00014 * 187.89552 * 18 17 16 21 21 C 1.47026 * 125.64671 * 353.85153 * 20 18 17 22 22 C 1.54312 * 107.27443 * 180.96763 * 21 20 18 23 23 C 1.55161 * 102.86468 * 22.52638 * 22 21 20 24 24 C 1.47420 * 125.64974 * 174.15665 * 20 18 17 25 25 C 1.39324 * 119.84978 * 0.55008 * 17 16 15 26 26 N 1.33015 * 121.09574 * 0.26325 * 12 11 10 27 27 C 1.31271 * 121.73105 * 359.46710 * 26 12 11 28 28 H 0.97001 * 119.99238 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.79302 * 359.95591 * 10 9 7 30 30 H 1.08006 * 120.26323 * 179.97438 * 11 10 9 31 31 H 1.08010 * 119.92486 * 0.05004 * 14 13 12 32 32 H 1.08002 * 119.84868 * 180.02562 * 15 14 13 33 33 H 1.07994 * 119.92878 * 179.70103 * 16 15 14 34 34 H 1.08997 * 109.88046 * 300.51048 * 21 20 18 35 35 H 1.08999 * 109.88144 * 61.67866 * 21 20 18 36 36 H 1.08997 * 110.92901 * 264.11292 * 22 21 20 37 37 H 1.09000 * 110.58973 * 140.78046 * 22 21 20 38 38 H 1.09000 * 111.00596 * 206.22799 * 23 22 21 39 39 H 1.09000 * 111.00364 * 82.37689 * 23 22 21 40 40 H 1.08998 * 110.37180 * 274.67671 * 24 20 18 41 41 H 1.09000 * 110.36813 * 36.88738 * 24 20 18 42 42 H 1.08002 * 120.14410 * 179.74867 * 25 17 16 43 43 H 1.07997 * 119.80044 * 180.25135 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7020 1.3462 0.0006 5 1 1.8834 2.3963 -1.2126 6 1 1.8832 2.3964 1.2124 7 6 2.0080 -1.2127 0.0005 8 1 3.0832 -1.2156 0.1022 9 6 1.3090 -2.4307 -0.1318 10 6 0.0585 -2.4736 -0.7885 11 6 -0.5802 -3.6767 -0.8923 12 6 0.0154 -4.8210 -0.3516 13 6 -0.6771 -6.1239 -0.4637 14 6 -1.8634 -6.2257 -1.1947 15 6 -2.5110 -7.4402 -1.2999 16 6 -1.9949 -8.5611 -0.6794 17 6 -0.8066 -8.4748 0.0498 18 6 -0.2523 -9.6771 0.7083 19 8 -0.7476 -10.7672 0.4994 20 7 0.8021 -9.5641 1.5401 21 6 1.5745 -8.3368 1.7827 22 6 2.6939 -8.6903 2.7843 23 6 2.8428 -10.2247 2.6085 24 6 1.3760 -10.6522 2.3526 25 6 -0.1479 -7.2520 0.1600 26 7 1.1914 -4.7565 0.2667 27 6 1.8467 -3.6255 0.3876 28 1 -0.4849 0.8401 -0.0004 29 1 -0.3818 -1.5767 -1.1983 30 1 -1.5375 -3.7438 -1.3879 31 1 -2.2746 -5.3521 -1.6790 32 1 -3.4275 -7.5134 -1.8665 33 1 -2.5090 -9.5073 -0.7616 34 1 2.0091 -7.9816 0.8484 35 1 0.9275 -7.5698 2.2084 36 1 2.3955 -8.4462 3.8038 37 1 3.6201 -8.1803 2.5197 38 1 3.2314 -10.6861 3.5164 39 1 3.4737 -10.4604 1.7515 40 1 0.8379 -10.7456 3.2959 41 1 1.3437 -11.5932 1.8035 42 1 0.7690 -7.1790 0.7260 43 1 2.8014 -3.6097 0.8923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240054835.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:38 Heat of formation + Delta-G solvation = 20.279798 kcal Electronic energy + Delta-G solvation = -25956.152581 eV Core-core repulsion = 22351.539216 eV Total energy + Delta-G solvation = -3604.613365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61756 -40.42627 -39.12069 -38.36461 -36.06054 -33.56494 -33.19990 -32.56929 -31.67296 -30.70692 -29.83873 -27.28771 -26.00451 -24.38452 -23.91200 -22.70677 -22.64196 -21.75391 -20.63198 -19.35520 -18.42370 -17.81987 -17.46281 -17.13229 -16.87075 -16.55759 -16.04557 -15.65495 -15.48439 -15.12093 -14.83510 -14.59515 -14.52735 -14.37492 -14.06600 -13.90276 -13.62519 -13.53160 -13.42292 -13.25048 -13.01935 -12.83208 -12.62214 -12.34321 -12.18716 -12.14061 -11.68315 -11.64041 -11.42495 -11.32643 -11.03231 -10.38280 -10.20213 -9.99278 -9.96338 -9.75067 -9.02545 -8.66372 -6.45967 -0.21092 0.15359 0.93592 1.13892 1.41088 1.50764 1.56121 1.82167 1.89973 2.16919 2.65331 3.01239 3.33895 3.60569 3.68309 3.75737 3.78005 4.00379 4.04343 4.14203 4.24258 4.30834 4.39156 4.42254 4.55471 4.58398 4.74906 4.76999 4.80864 4.87505 4.88849 4.95096 5.03419 5.05973 5.10320 5.16872 5.22924 5.30874 5.33135 5.39835 5.46496 5.63759 5.77911 5.92375 6.02499 6.05202 6.31956 6.47899 6.70423 6.75490 6.97955 7.64665 8.19436 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.003151 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.281716 B = 8884.968799 C =10463.836732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.029 3.971 3 Si 0.993 3.007 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.459 4.459 8 H 0.091 0.909 9 C 0.038 3.962 10 C -0.160 4.160 11 C -0.130 4.130 12 C -0.007 4.007 13 C -0.021 4.021 14 C -0.105 4.105 15 C -0.114 4.114 16 C -0.086 4.086 17 C -0.152 4.152 18 C 0.572 3.428 19 O -0.578 6.578 20 N -0.615 5.615 21 C 0.087 3.913 22 C -0.127 4.127 23 C -0.121 4.121 24 C 0.096 3.904 25 C -0.120 4.120 26 N -0.456 5.456 27 C -0.026 4.026 28 H 0.293 0.707 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.139 0.861 32 H 0.162 0.838 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.172 0.828 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 -9.778 3.148 10.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.187 4.187 3 Si 0.813 3.187 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.488 4.488 8 H 0.109 0.891 9 C 0.033 3.967 10 C -0.185 4.185 11 C -0.150 4.150 12 C -0.142 4.142 13 C -0.022 4.022 14 C -0.124 4.124 15 C -0.132 4.132 16 C -0.105 4.105 17 C -0.155 4.155 18 C 0.363 3.637 19 O -0.460 6.460 20 N -0.347 5.347 21 C -0.035 4.035 22 C -0.165 4.165 23 C -0.159 4.159 24 C -0.026 4.026 25 C -0.138 4.138 26 N -0.163 5.163 27 C -0.191 4.191 28 H 0.104 0.896 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.154 0.846 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.188 0.812 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.023 -10.954 3.361 11.635 hybrid contribution -0.364 1.761 -0.456 1.855 sum 1.659 -9.193 2.905 9.783 Atomic orbital electron populations 1.69771 1.09085 1.30996 1.34217 1.26948 0.95712 1.04975 0.91065 0.84966 0.79422 0.75371 0.78910 1.17639 1.18968 1.19150 1.20003 0.96040 0.90696 1.42077 0.89066 1.18978 0.93445 0.94625 0.89632 1.21672 0.97860 0.97324 1.01695 1.21602 1.00048 0.93075 1.00256 1.19220 0.94552 0.92334 1.08086 1.18735 0.94645 0.91570 0.97201 1.21697 0.94087 0.98999 0.97659 1.21264 1.01011 0.91050 0.99888 1.21370 0.94162 0.99686 0.95326 1.19859 0.98826 0.92956 1.03847 1.18189 0.79061 0.88311 0.78113 1.90687 1.61795 1.28983 1.64583 1.48496 1.30083 1.13291 1.42858 1.22624 0.94111 0.86541 1.00227 1.22738 0.97926 0.96668 0.99188 1.22798 0.93746 0.95206 1.04116 1.22495 0.95025 0.90254 0.94803 1.22970 1.01720 0.90512 0.98603 1.66935 1.07038 1.29289 1.13064 1.22740 1.01725 0.88403 1.06191 0.89588 0.85384 0.85625 0.84306 0.82036 0.84583 0.90797 0.91112 0.89162 0.88336 0.86840 0.90355 0.90459 0.91032 0.81185 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.63 10.47 21.84 0.23 -38.40 16 2 C 0.03 1.32 5.36 85.28 0.46 1.77 16 3 Si 0.99 34.12 29.57 68.60 2.03 36.15 16 4 H -0.25 -8.42 7.11 99.48 0.71 -7.71 16 5 H -0.27 -8.82 7.11 99.48 0.71 -8.11 16 6 H -0.27 -8.91 7.11 99.48 0.71 -8.20 16 7 C -0.46 -22.20 9.10 23.40 0.21 -21.99 16 8 H 0.09 4.14 7.85 -2.91 -0.02 4.11 16 9 C 0.04 1.89 5.61 -21.17 -0.12 1.77 16 10 C -0.16 -7.89 8.75 22.64 0.20 -7.69 16 11 C -0.13 -5.78 9.37 22.29 0.21 -5.57 16 12 C -0.01 -0.32 6.73 41.95 0.28 -0.04 16 13 C -0.02 -0.79 5.87 -20.07 -0.12 -0.91 16 14 C -0.11 -3.37 9.41 22.58 0.21 -3.16 16 15 C -0.11 -3.14 10.02 22.19 0.22 -2.92 16 16 C -0.09 -2.65 9.59 22.59 0.22 -2.43 16 17 C -0.15 -5.20 5.87 -20.12 -0.12 -5.32 16 18 C 0.57 19.62 7.80 86.79 0.68 20.30 16 19 O -0.58 -22.36 16.59 -3.87 -0.06 -22.43 16 20 N -0.62 -17.33 3.33 -827.99 -2.75 -20.09 16 21 C 0.09 2.19 4.86 86.72 0.42 2.61 16 22 C -0.13 -2.17 6.95 31.78 0.22 -1.95 16 23 C -0.12 -1.78 7.08 31.99 0.23 -1.55 16 24 C 0.10 2.03 6.94 86.86 0.60 2.64 16 25 C -0.12 -4.31 8.13 22.80 0.19 -4.12 16 26 N -0.46 -20.67 9.39 -182.72 -1.72 -22.38 16 27 C -0.03 -1.24 10.97 85.44 0.94 -0.30 16 28 H 0.29 12.44 8.29 -92.71 -0.77 11.67 16 29 H 0.13 6.50 5.91 -2.91 -0.02 6.48 16 30 H 0.13 4.79 6.17 -2.91 -0.02 4.78 16 31 H 0.14 3.99 6.17 -2.91 -0.02 3.98 16 32 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.14 3.89 7.66 -2.91 -0.02 3.87 16 34 H 0.07 2.06 6.75 -2.39 -0.02 2.04 16 35 H 0.07 2.00 6.74 -2.39 -0.02 1.98 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.63 7.98 -2.39 -0.02 1.61 16 42 H 0.17 5.91 2.22 -7.83 -0.02 5.90 16 43 H 0.14 6.08 8.06 -2.91 -0.02 6.06 16 Total: -1.00 -61.67 351.65 3.69 -57.98 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 1.04 Total: 38.04 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 4.93 Total: -28.86 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -4.24 Total: -80.87 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.43 kcal Atomic # 14 Polarization: 34.12 SS G_CDS: 2.03 Total: 36.15 kcal Total: -61.67 3.69 -57.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240054835.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.261 kcal (2) G-P(sol) polarization free energy of solvation -61.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds