Wall clock time and date at job start Tue Mar 31 2020 14:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86805 * 119.99746 * 2 1 4 4 H 1.48502 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47185 * 300.00204 * 3 2 1 6 6 H 1.48498 * 109.46698 * 60.00231 * 3 2 1 7 7 C 1.40044 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99904 * 186.07011 * 7 2 1 9 9 C 1.41528 * 119.99912 * 6.07780 * 7 2 1 10 10 C 1.41140 * 120.98314 * 205.71116 * 9 7 2 11 11 C 1.37745 * 119.06652 * 179.97438 * 10 9 7 12 12 N 1.31914 * 121.15950 * 359.96972 * 11 10 9 13 13 C 1.32786 * 122.20906 * 0.03207 * 12 11 10 14 14 C 1.48381 * 119.61659 * 179.97438 * 13 12 11 15 15 C 1.39470 * 120.05343 * 184.99714 * 14 13 12 16 16 C 1.38117 * 120.16862 * 179.97438 * 15 14 13 17 17 C 1.38054 * 120.27496 * 0.30056 * 16 15 14 18 18 C 1.39629 * 120.10206 * 359.44850 * 17 16 15 19 19 C 1.47860 * 120.08644 * 180.29849 * 18 17 16 20 20 O 1.21547 * 120.00075 * 7.77833 * 19 18 17 21 21 N 1.34778 * 119.99744 * 187.78042 * 19 18 17 22 22 C 1.47030 * 125.65065 * 353.89812 * 21 19 18 23 23 C 1.54307 * 107.27424 * 180.96614 * 22 21 19 24 24 C 1.55156 * 102.86564 * 22.52812 * 23 22 21 25 25 C 1.47425 * 125.65133 * 174.20479 * 21 19 18 26 26 C 1.39074 * 120.04951 * 5.01637 * 14 13 12 27 27 C 1.38900 * 120.77423 * 0.26780 * 13 12 11 28 28 H 0.97001 * 120.00340 * 0.02562 * 1 2 3 29 29 H 1.07991 * 120.46756 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.41680 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.91602 * 0.02562 * 15 14 13 32 32 H 1.07999 * 119.86183 * 180.02562 * 16 15 14 33 33 H 1.07998 * 119.95358 * 179.72292 * 17 16 15 34 34 H 1.09003 * 109.88090 * 300.51322 * 22 21 19 35 35 H 1.09004 * 109.87658 * 61.67579 * 22 21 19 36 36 H 1.08999 * 110.92988 * 264.10405 * 23 22 21 37 37 H 1.09004 * 110.59078 * 140.78664 * 23 22 21 38 38 H 1.09004 * 111.00278 * 206.22383 * 24 23 22 39 39 H 1.08998 * 111.00647 * 82.37861 * 24 23 22 40 40 H 1.09005 * 110.36538 * 274.67786 * 25 21 19 41 41 H 1.09003 * 110.36359 * 36.88157 * 25 21 19 42 42 H 1.08007 * 120.13759 * 359.95613 * 26 14 13 43 43 H 1.07996 * 120.61933 * 179.72730 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8825 2.3965 -1.2124 6 1 1.8825 2.3964 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0830 -1.2154 0.0984 9 6 1.3059 -2.4350 -0.1309 10 6 1.8391 -3.6371 0.3817 11 6 1.1223 -4.8040 0.2333 12 7 -0.0475 -4.8136 -0.3762 13 6 -0.5941 -3.7116 -0.8764 14 6 -1.9132 -3.7887 -1.5515 15 6 -2.4477 -2.6593 -2.1711 16 6 -3.6751 -2.7285 -2.8007 17 6 -4.3838 -3.9132 -2.8158 18 6 -3.8570 -5.0522 -2.2037 19 6 -4.6132 -6.3225 -2.2259 20 8 -5.6239 -6.4166 -2.8946 21 7 -4.1820 -7.3762 -1.5045 22 6 -2.9175 -7.4432 -0.7572 23 6 -2.8407 -8.8424 -0.1112 24 6 -3.7920 -9.6861 -1.0003 25 6 -4.8969 -8.6548 -1.3393 26 6 -2.6186 -4.9872 -1.5671 27 6 0.0573 -2.4886 -0.7803 28 1 -0.4851 0.8400 -0.0004 29 1 2.7951 -3.6419 0.8838 30 1 1.5248 -5.7270 0.6238 31 1 -1.9001 -1.7284 -2.1593 32 1 -4.0842 -1.8510 -3.2792 33 1 -5.3450 -3.9603 -3.3058 34 1 -2.0773 -7.2998 -1.4367 35 1 -2.9045 -6.6775 0.0185 36 1 -3.1973 -8.8160 0.9185 37 1 -1.8233 -9.2309 -0.1581 38 1 -4.2017 -10.5291 -0.4437 39 1 -3.2843 -10.0259 -1.9030 40 1 -5.6147 -8.5852 -0.5219 41 1 -5.4029 -8.9289 -2.2651 42 1 -2.2080 -5.8643 -1.0888 43 1 -0.3876 -1.5947 -1.1918 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240055239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:42 Heat of formation + Delta-G solvation = 34.470974 kcal Electronic energy + Delta-G solvation = -26212.180459 eV Core-core repulsion = 22608.182469 eV Total energy + Delta-G solvation = -3603.997989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39866 -38.85015 -37.76629 -37.10744 -34.25645 -32.35278 -31.94728 -30.81724 -30.43605 -28.87797 -28.23475 -26.13681 -24.76302 -23.02953 -22.47684 -21.49962 -21.27263 -20.52786 -19.30733 -17.60305 -17.01169 -16.57668 -16.02478 -15.57983 -15.51984 -14.66910 -14.61507 -14.40490 -14.07781 -13.74695 -13.68788 -13.50100 -13.16689 -12.93758 -12.75714 -12.67976 -12.63049 -12.40416 -11.89489 -11.62671 -11.46758 -11.36041 -11.29258 -11.09340 -10.89683 -10.88674 -10.38209 -10.31592 -9.91287 -9.74397 -9.63216 -8.99032 -8.67327 -8.56498 -8.20320 -8.07236 -7.27855 -6.86470 -4.74422 1.16847 1.54972 2.64822 2.72082 2.96401 2.99604 3.01173 3.07680 3.25280 3.77383 4.21496 4.33573 4.46705 4.63492 4.78822 4.85518 5.10053 5.14346 5.21374 5.28504 5.49387 5.54252 5.55913 5.58606 5.68983 5.71995 5.76706 5.83149 5.88540 5.95609 6.01255 6.14104 6.23966 6.37666 6.57806 6.63096 6.66636 6.72557 6.85884 6.99967 7.10871 7.19172 7.29599 7.37619 7.51643 7.76998 7.97720 8.25248 8.32855 8.59914 8.63579 9.40760 9.98608 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.018225 B = 0.003389 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.020276 B = 8259.877822 C = 9649.494469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.450 4.450 8 H 0.082 0.918 9 C 0.121 3.879 10 C -0.268 4.268 11 C 0.102 3.898 12 N -0.564 5.564 13 C 0.131 3.869 14 C -0.020 4.020 15 C -0.079 4.079 16 C -0.134 4.134 17 C -0.071 4.071 18 C -0.150 4.150 19 C 0.581 3.419 20 O -0.548 6.548 21 N -0.617 5.617 22 C 0.089 3.911 23 C -0.134 4.134 24 C -0.134 4.134 25 C 0.105 3.895 26 C -0.100 4.100 27 C -0.184 4.184 28 H 0.283 0.717 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.170 0.830 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 -9.695 -0.976 11.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.481 4.481 8 H 0.100 0.900 9 C 0.113 3.887 10 C -0.291 4.291 11 C -0.054 4.054 12 N -0.279 5.279 13 C 0.001 3.999 14 C -0.020 4.020 15 C -0.098 4.098 16 C -0.152 4.152 17 C -0.090 4.090 18 C -0.153 4.153 19 C 0.372 3.628 20 O -0.427 6.427 21 N -0.351 5.351 22 C -0.033 4.033 23 C -0.172 4.172 24 C -0.172 4.172 25 C -0.017 4.017 26 C -0.118 4.118 27 C -0.206 4.206 28 H 0.094 0.906 29 H 0.120 0.880 30 H 0.141 0.859 31 H 0.154 0.846 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.187 0.813 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.386 -10.321 -1.447 12.223 hybrid contribution 0.962 1.750 0.299 2.019 sum -5.425 -8.572 -1.148 10.209 Atomic orbital electron populations 1.69687 1.07548 1.29373 1.35465 1.25991 0.94958 1.01643 0.91944 0.86102 0.80708 0.80298 0.78752 1.18341 1.19558 1.19746 1.19684 0.95287 0.89823 1.43313 0.89990 1.17832 0.91415 0.92404 0.87057 1.21965 1.02873 0.94676 1.09621 1.21793 0.90948 0.96435 0.96208 1.67179 1.13537 1.30095 1.17114 1.19251 0.92611 0.90369 0.97717 1.18769 0.93522 0.92901 0.96853 1.21666 0.94953 0.98735 0.94437 1.20983 0.95309 0.97638 1.01251 1.21138 0.99502 0.91521 0.96885 1.19687 0.96835 0.93614 1.05146 1.18088 0.84078 0.82636 0.77960 1.90718 1.26480 1.83523 1.42005 1.48361 1.21842 1.14693 1.50235 1.22619 0.86383 0.98124 0.96146 1.22715 1.00928 0.94093 0.99418 1.22798 0.96587 0.97399 1.00442 1.22216 0.95010 0.82687 1.01805 1.22903 0.92583 1.00216 0.96075 1.22548 0.98053 0.97119 1.02918 0.90568 0.87995 0.85924 0.84649 0.85599 0.85460 0.89551 0.89704 0.90404 0.89596 0.89846 0.90538 0.91493 0.90370 0.81321 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.93 10.51 55.55 0.58 -18.35 16 2 C 0.07 1.70 5.37 -17.34 -0.09 1.60 16 3 Si 0.92 17.46 29.56 -169.99 -5.03 12.43 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.45 -11.11 9.15 -37.65 -0.34 -11.46 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.12 3.03 5.62 -106.56 -0.60 2.43 16 10 C -0.27 -6.12 9.90 -38.66 -0.38 -6.50 16 11 C 0.10 2.16 11.15 -17.70 -0.20 1.96 16 12 N -0.56 -12.39 9.40 -9.94 -0.09 -12.49 16 13 C 0.13 2.98 6.72 -83.03 -0.56 2.42 16 14 C -0.02 -0.39 5.87 -104.95 -0.62 -1.01 16 15 C -0.08 -1.45 9.41 -39.17 -0.37 -1.82 16 16 C -0.13 -2.13 10.02 -39.69 -0.40 -2.52 16 17 C -0.07 -1.17 9.59 -39.13 -0.38 -1.55 16 18 C -0.15 -2.62 5.87 -105.01 -0.62 -3.23 16 19 C 0.58 9.97 7.81 -12.32 -0.10 9.88 16 20 O -0.55 -10.61 16.59 5.32 0.09 -10.52 16 21 N -0.62 -8.75 3.33 -175.66 -0.58 -9.33 16 22 C 0.09 1.12 4.86 -3.07 -0.01 1.11 16 23 C -0.13 -1.22 6.95 -24.91 -0.17 -1.39 16 24 C -0.13 -1.12 7.08 -24.59 -0.17 -1.29 16 25 C 0.11 1.17 6.94 -2.53 -0.02 1.16 16 26 C -0.10 -1.81 8.13 -38.84 -0.32 -2.13 16 27 C -0.18 -4.50 8.14 -38.35 -0.31 -4.81 16 28 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16 29 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 30 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 31 H 0.14 2.52 6.19 -52.48 -0.32 2.19 16 32 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.13 1.95 7.66 -52.49 -0.40 1.55 16 34 H 0.09 1.16 6.75 -51.93 -0.35 0.81 16 35 H 0.09 1.16 6.74 -51.93 -0.35 0.81 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.91 7.98 -51.93 -0.41 0.50 16 42 H 0.17 2.87 2.23 -57.71 -0.13 2.74 16 43 H 0.14 3.50 4.08 -52.49 -0.21 3.29 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -28.61 351.93 -10.49 -39.10 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.11 Total: 11.01 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -5.65 Total: -17.16 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.09 Total: -40.17 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.61 -10.49 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240055239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.573 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds