Wall clock time and date at job start Tue Mar 31 2020 14:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30706 * 1 3 3 Si 1.86800 * 119.99615 * 2 1 4 4 H 1.48497 * 109.47217 * 239.99895 * 3 2 1 5 5 H 1.48499 * 109.47507 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47148 * 119.99939 * 3 2 1 7 7 C 1.40099 * 120.00441 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00501 * 179.97438 * 7 2 1 9 9 C 1.40996 * 119.99812 * 0.02562 * 7 2 1 10 10 C 1.40870 * 119.68104 * 179.97438 * 9 7 2 11 11 C 1.36696 * 119.25136 * 180.02562 * 10 9 7 12 12 C 1.40249 * 118.60576 * 359.97438 * 11 10 9 13 13 C 1.47994 * 120.34247 * 180.02562 * 12 11 10 14 14 C 1.39727 * 120.07508 * 0.02562 * 13 12 11 15 15 C 1.38031 * 120.14094 * 180.02562 * 14 13 12 16 16 C 1.38129 * 120.30354 * 359.95223 * 15 14 13 17 17 C 1.39683 * 120.15217 * 0.04277 * 16 15 14 18 18 C 1.47859 * 120.07671 * 180.25692 * 17 16 15 19 19 O 1.21551 * 120.00179 * 171.73737 * 18 17 16 20 20 N 1.34775 * 120.00299 * 351.73438 * 18 17 16 21 21 C 1.47025 * 125.64442 * 4.97407 * 20 18 17 22 22 C 1.54316 * 107.27375 * 180.96935 * 21 20 18 23 23 C 1.55162 * 102.86400 * 22.52867 * 22 21 20 24 24 C 1.47422 * 125.65248 * 185.28403 * 20 18 17 25 25 C 1.39323 * 119.84715 * 359.97438 * 17 16 15 26 26 C 1.40081 * 119.31001 * 0.27571 * 12 11 10 27 27 N 1.31194 * 120.69256 * 359.45037 * 26 12 11 28 28 H 0.96999 * 120.00677 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.37766 * 0.02562 * 10 9 7 30 30 H 1.08002 * 120.69622 * 179.97438 * 11 10 9 31 31 H 1.07995 * 119.92931 * 359.97285 * 14 13 12 32 32 H 1.07998 * 119.84651 * 179.97438 * 15 14 13 33 33 H 1.08004 * 119.92712 * 180.02562 * 16 15 14 34 34 H 1.08999 * 109.88371 * 300.51568 * 21 20 18 35 35 H 1.08999 * 109.88132 * 61.68159 * 21 20 18 36 36 H 1.09001 * 110.92384 * 264.11061 * 22 21 20 37 37 H 1.09001 * 110.58815 * 140.78607 * 22 21 20 38 38 H 1.09004 * 111.00266 * 206.22741 * 23 22 21 39 39 H 1.09001 * 111.00258 * 82.37643 * 23 22 21 40 40 H 1.08994 * 110.36965 * 274.67229 * 24 20 18 41 41 H 1.09008 * 110.36527 * 36.88597 * 24 20 18 42 42 H 1.08007 * 120.14664 * 180.02562 * 25 17 16 43 43 H 1.08000 * 119.65764 * 179.72911 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.0947 1.6965 -1.2124 5 1 1.2760 2.7465 0.0006 6 1 3.0947 1.6965 1.2125 7 6 2.0076 -1.2132 0.0005 8 1 3.0877 -1.2132 0.0001 9 6 1.3027 -2.4343 0.0005 10 6 2.0139 -3.6503 0.0005 11 6 1.3216 -4.8290 0.0000 12 6 -0.0802 -4.7844 0.0000 13 6 -0.8680 -6.0373 0.0000 14 6 -0.2172 -7.2737 0.0006 15 6 -0.9506 -8.4430 0.0000 16 6 -2.3312 -8.3998 0.0000 17 6 -2.9947 -7.1705 -0.0005 18 6 -4.4726 -7.1262 0.0052 19 8 -5.0483 -6.0663 0.1562 20 7 -5.1815 -8.2609 -0.1570 21 6 -4.6199 -9.6167 -0.2456 22 6 -5.8003 -10.5890 -0.4525 23 6 -6.9038 -9.6719 -1.0431 24 6 -6.6479 -8.3475 -0.2815 25 6 -2.2606 -5.9864 -0.0003 26 6 -0.7267 -3.5418 -0.0053 27 7 -0.0351 -2.4270 0.0006 28 1 -0.4851 0.8400 0.0004 29 1 3.0939 -3.6514 0.0010 30 1 1.8432 -5.7747 -0.0004 31 1 0.8620 -7.3145 0.0005 32 1 -0.4427 -9.3961 0.0000 33 1 -2.8991 -9.3184 0.0000 34 1 -3.9334 -9.6792 -1.0899 35 1 -4.0974 -9.8626 0.6788 36 1 -6.1223 -11.0179 0.4964 37 1 -5.5313 -11.3734 -1.1600 38 1 -7.8968 -10.0639 -0.8228 39 1 -6.7675 -9.5381 -2.1163 40 1 -7.1110 -8.3815 0.7046 41 1 -7.0310 -7.5005 -0.8507 42 1 -2.7687 -5.0333 -0.0002 43 1 -1.8060 -3.5009 -0.0097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240058072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:47 Heat of formation + Delta-G solvation = 25.743101 kcal Electronic energy + Delta-G solvation = -25476.664847 eV Core-core repulsion = 21872.288388 eV Total energy + Delta-G solvation = -3604.376458 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59034 -40.40735 -39.08685 -38.38908 -35.76098 -33.95206 -32.71623 -32.68146 -31.66798 -30.84832 -29.70057 -27.35883 -25.99987 -24.44714 -23.94967 -22.78631 -22.19885 -21.84171 -20.73321 -19.51313 -18.29495 -17.87452 -17.49829 -17.20272 -16.83644 -16.29904 -15.90837 -15.80492 -15.39406 -15.09023 -14.63580 -14.52928 -14.46740 -14.41924 -14.15904 -14.06877 -13.78175 -13.51239 -13.35691 -13.05935 -12.85378 -12.79547 -12.61847 -12.22611 -12.19968 -12.09145 -11.83886 -11.60354 -11.43362 -11.36860 -11.01060 -10.58221 -10.11951 -10.01950 -9.66160 -9.57484 -8.97388 -8.40016 -6.55772 -0.15575 0.15257 0.99881 1.20645 1.37351 1.51652 1.52735 1.84642 1.90540 2.16856 2.70663 3.06861 3.39523 3.61844 3.80204 3.88821 3.91510 3.99961 4.07558 4.09104 4.23853 4.27282 4.33520 4.45580 4.49412 4.54171 4.58168 4.76868 4.82281 4.85784 4.94358 4.95296 5.01956 5.05702 5.10552 5.14372 5.24813 5.34956 5.38340 5.39781 5.44702 5.51691 5.71033 5.93767 6.03219 6.05369 6.19437 6.36442 6.61097 6.83894 7.01451 8.07380 8.32679 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.002524 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.825716 B =11091.917573 C =12150.288795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.445 4.445 8 H 0.100 0.900 9 C 0.215 3.785 10 C -0.283 4.283 11 C -0.034 4.034 12 C -0.268 4.268 13 C -0.007 4.007 14 C -0.116 4.116 15 C -0.105 4.105 16 C -0.139 4.139 17 C -0.139 4.139 18 C 0.565 3.435 19 O -0.592 6.592 20 N -0.614 5.614 21 C 0.074 3.926 22 C -0.124 4.124 23 C -0.124 4.124 24 C 0.093 3.907 25 C -0.106 4.106 26 C 0.126 3.874 27 N -0.524 5.524 28 H 0.282 0.718 29 H 0.121 0.879 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.171 0.829 33 H 0.192 0.808 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.098 0.902 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 -23.433 -1.479 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.207 4.207 3 Si 0.814 3.186 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.475 4.475 8 H 0.118 0.882 9 C 0.092 3.908 10 C -0.306 4.306 11 C -0.057 4.057 12 C -0.273 4.273 13 C -0.008 4.008 14 C -0.135 4.135 15 C -0.123 4.123 16 C -0.157 4.157 17 C -0.142 4.142 18 C 0.356 3.644 19 O -0.474 6.474 20 N -0.346 5.346 21 C -0.047 4.047 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.029 4.029 25 C -0.126 4.126 26 C -0.041 4.041 27 N -0.237 5.237 28 H 0.093 0.907 29 H 0.139 0.861 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.188 0.812 33 H 0.208 0.792 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.109 -21.845 -1.386 23.342 hybrid contribution 0.433 0.939 0.080 1.037 sum -7.676 -20.906 -1.306 22.309 Atomic orbital electron populations 1.70237 1.09363 1.29716 1.27645 1.27237 0.95750 1.05262 0.92480 0.85076 0.78505 0.74576 0.80470 1.17750 1.19454 1.17792 1.20149 0.95365 0.90293 1.41720 0.88153 1.19208 0.88741 0.93847 0.89046 1.21684 0.99973 0.93341 1.15560 1.21019 0.92533 0.97938 0.94247 1.19307 0.94052 0.92692 1.21249 1.18766 0.91712 0.93213 0.97096 1.21696 1.01137 0.91262 0.99357 1.21462 0.93510 0.98848 0.98449 1.22970 0.95897 0.97979 0.98816 1.19706 0.91544 0.95211 1.07704 1.18366 0.87526 0.82578 0.75921 1.90742 1.72769 1.31492 1.52404 1.48443 1.08504 1.06688 1.71008 1.22934 0.98472 0.80181 1.03109 1.22764 0.92979 0.96977 1.03434 1.22797 1.01116 0.92429 0.99845 1.22475 0.79446 0.99980 1.01024 1.21181 0.93581 0.97511 1.00310 1.22964 0.98847 0.88993 0.93293 1.68732 1.08089 1.27772 1.19098 0.90709 0.86065 0.84003 0.84203 0.81152 0.79215 0.88931 0.88713 0.88953 0.87172 0.87406 0.90472 0.91007 0.92578 0.88368 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.96 11.44 21.85 0.25 -41.71 16 2 C 0.02 0.80 5.50 85.31 0.47 1.27 16 3 Si 0.99 38.08 29.56 68.60 2.03 40.11 16 4 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 6 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 7 C -0.45 -24.21 9.12 23.40 0.21 -24.00 16 8 H 0.10 4.93 7.85 -2.91 -0.02 4.91 16 9 C 0.21 12.22 6.55 40.17 0.26 12.48 16 10 C -0.28 -13.84 9.76 22.55 0.22 -13.62 16 11 C -0.03 -1.50 9.46 22.40 0.21 -1.29 16 12 C -0.27 -12.50 5.92 -19.75 -0.12 -12.61 16 13 C -0.01 -0.27 5.88 -20.06 -0.12 -0.39 16 14 C -0.12 -3.42 9.44 22.58 0.21 -3.21 16 15 C -0.11 -2.28 10.02 22.19 0.22 -2.06 16 16 C -0.14 -3.18 8.60 22.59 0.19 -2.99 16 17 C -0.14 -4.58 5.87 -20.12 -0.12 -4.70 16 18 C 0.56 19.28 7.81 86.79 0.68 19.96 16 19 O -0.59 -25.99 16.67 -3.88 -0.06 -26.05 16 20 N -0.61 -14.27 3.33 -827.36 -2.75 -17.02 16 21 C 0.07 0.91 4.87 86.73 0.42 1.33 16 22 C -0.12 -0.75 6.95 31.78 0.22 -0.53 16 23 C -0.12 -1.16 7.08 31.99 0.23 -0.93 16 24 C 0.09 1.75 6.89 86.86 0.60 2.35 16 25 C -0.11 -4.30 8.98 22.80 0.20 -4.10 16 26 C 0.13 6.79 10.60 85.24 0.90 7.69 16 27 N -0.52 -31.24 7.83 -188.23 -1.47 -32.72 16 28 H 0.28 14.32 8.29 -92.71 -0.77 13.55 16 29 H 0.12 5.25 8.06 -2.91 -0.02 5.23 16 30 H 0.14 4.84 6.29 -2.91 -0.02 4.83 16 31 H 0.14 3.55 6.24 -2.91 -0.02 3.53 16 32 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.19 2.67 2.76 -7.59 -0.02 2.65 16 34 H 0.09 0.98 6.70 -2.39 -0.02 0.97 16 35 H 0.10 0.93 6.77 -2.39 -0.02 0.92 16 36 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.30 8.09 -2.38 -0.02 1.28 16 42 H 0.10 4.54 5.82 -2.91 -0.02 4.52 16 43 H 0.12 6.20 6.21 -2.91 -0.02 6.18 16 Total: -1.00 -79.29 351.26 3.93 -75.35 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 1.04 Total: 27.38 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 4.91 Total: -25.33 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -3.98 Total: -91.46 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.06 Total: -26.05 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -79.29 3.93 -75.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240058072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.097 kcal (2) G-P(sol) polarization free energy of solvation -79.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds