Wall clock time and date at job start Tue Mar 31 2020 14:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48500 * 109.47274 * 269.99690 * 3 2 1 5 5 H 1.48504 * 109.47293 * 30.00168 * 3 2 1 6 6 H 1.48506 * 109.46855 * 149.99868 * 3 2 1 7 7 C 1.39938 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99988 * 190.90879 * 7 2 1 9 9 C 1.41442 * 119.99850 * 10.91115 * 7 2 1 10 10 C 1.40804 * 120.60186 * 207.64213 * 9 7 2 11 11 N 1.31491 * 120.65963 * 179.97438 * 10 9 7 12 12 C 1.31943 * 122.12159 * 359.71760 * 11 10 9 13 13 C 1.39660 * 121.15316 * 0.54716 * 12 11 10 14 14 C 1.48432 * 120.41139 * 179.74516 * 13 12 11 15 15 C 1.39441 * 120.04711 * 179.70182 * 14 13 12 16 16 C 1.38123 * 120.17156 * 180.02562 * 15 14 13 17 17 C 1.38057 * 120.27001 * 0.02562 * 16 15 14 18 18 C 1.39616 * 120.09750 * 359.97438 * 17 16 15 19 19 C 1.47865 * 120.08790 * 180.02562 * 18 17 16 20 20 O 1.21547 * 120.00168 * 186.71521 * 19 18 17 21 21 N 1.34773 * 119.99634 * 6.72144 * 19 18 17 22 22 C 1.47027 * 125.65190 * 354.19588 * 21 19 18 23 23 C 1.54313 * 107.27569 * 180.96993 * 22 21 19 24 24 C 1.55163 * 102.86360 * 22.52948 * 23 22 21 25 25 C 1.47433 * 125.64545 * 174.50778 * 21 19 18 26 26 C 1.39053 * 120.04693 * 359.72092 * 14 13 12 27 27 C 1.39169 * 119.17935 * 359.47535 * 13 12 11 28 28 H 0.96997 * 119.99775 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.67083 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.42701 * 180.27426 * 12 11 10 31 31 H 1.08002 * 119.91807 * 0.04349 * 15 14 13 32 32 H 1.07996 * 119.86483 * 179.97438 * 16 15 14 33 33 H 1.08006 * 119.94911 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.88231 * 300.51455 * 22 21 19 35 35 H 1.09000 * 109.88131 * 61.68250 * 22 21 19 36 36 H 1.08998 * 110.92479 * 264.11161 * 23 22 21 37 37 H 1.09001 * 110.59004 * 140.78850 * 23 22 21 38 38 H 1.08998 * 111.00120 * 206.22824 * 24 23 22 39 39 H 1.08999 * 111.00435 * 82.37512 * 24 23 22 40 40 H 1.09000 * 110.36602 * 274.66838 * 25 21 19 41 41 H 1.09001 * 110.36589 * 36.88618 * 25 21 19 42 42 H 1.08000 * 120.13363 * 0.26037 * 26 14 13 43 43 H 1.08002 * 120.95624 * 180.27541 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4899 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5399 1.4402 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0733 -1.2203 0.1775 9 6 1.3199 -2.4258 -0.2308 10 6 1.8004 -3.6356 0.3060 11 7 1.1614 -4.7647 0.0921 12 6 0.0522 -4.8190 -0.6205 13 6 -0.4939 -3.6695 -1.1958 14 6 -1.7395 -3.7505 -1.9990 15 6 -2.2816 -2.5970 -2.5648 16 6 -3.4408 -2.6693 -3.3123 17 6 -4.0708 -3.8827 -3.5040 18 6 -3.5378 -5.0446 -2.9427 19 6 -4.2124 -6.3442 -3.1486 20 8 -3.8189 -7.3330 -2.5614 21 7 -5.2635 -6.4323 -3.9876 22 6 -5.9159 -5.3025 -4.6655 23 6 -7.0800 -5.8784 -5.4988 24 6 -7.3754 -7.2283 -4.7930 25 6 -5.9536 -7.6770 -4.3724 26 6 -2.3677 -4.9765 -2.1881 27 6 0.1410 -2.4464 -1.0019 28 1 -0.4850 0.8400 0.0004 29 1 2.7028 -3.6362 0.8993 30 1 -0.4396 -5.7696 -0.7651 31 1 -1.7937 -1.6447 -2.4184 32 1 -3.8566 -1.7727 -3.7478 33 1 -4.9768 -3.9333 -4.0898 34 1 -6.2991 -4.5983 -3.9270 35 1 -5.2038 -4.8032 -5.3225 36 1 -6.7750 -6.0423 -6.5324 37 1 -7.9477 -5.2204 -5.4514 38 1 -7.8214 -7.9420 -5.4857 39 1 -8.0129 -7.0819 -3.9211 40 1 -5.4420 -8.1509 -5.2102 41 1 -6.0049 -8.3601 -3.5246 42 1 -1.9535 -5.8715 -1.7478 43 1 -0.2587 -1.5390 -1.4298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240059608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:51 Heat of formation + Delta-G solvation = 35.181586 kcal Electronic energy + Delta-G solvation = -25727.870165 eV Core-core repulsion = 22123.902990 eV Total energy + Delta-G solvation = -3603.967175 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54672 -38.95080 -37.79810 -37.28924 -34.13734 -33.00413 -31.69786 -30.89004 -30.32024 -29.64540 -28.03827 -25.81163 -24.90830 -23.02072 -22.81866 -21.58734 -21.16076 -20.55039 -19.59519 -17.64476 -16.83456 -16.77897 -16.35766 -15.75182 -15.45845 -15.04576 -14.80111 -14.61538 -14.16682 -13.86295 -13.65989 -13.56325 -13.28055 -13.03400 -12.86674 -12.79885 -12.57033 -12.09390 -12.04789 -11.63679 -11.58829 -11.52378 -11.33926 -11.25773 -11.14277 -10.81272 -10.59080 -10.52366 -10.00606 -9.78102 -9.47802 -9.33767 -8.89893 -8.62497 -8.19044 -7.89722 -7.31402 -6.86431 -4.58073 1.06499 1.45510 2.57713 2.79064 2.81717 2.99028 3.02415 3.12711 3.17107 3.81406 4.12172 4.17977 4.19177 4.53262 4.60439 4.68951 4.86941 4.97956 5.10575 5.15854 5.21693 5.35579 5.42558 5.46883 5.51252 5.58255 5.59447 5.66867 5.71004 5.77616 5.93881 6.01776 6.15917 6.19555 6.47518 6.54320 6.57962 6.67018 6.73904 7.00168 7.05347 7.12886 7.24598 7.36562 7.60089 7.77821 7.83558 8.15085 8.33896 8.60305 8.63230 9.53629 10.03702 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022197 B = 0.002817 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.135636 B = 9935.823352 C =11087.426071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.450 4.450 8 H 0.083 0.917 9 C 0.058 3.942 10 C -0.009 4.009 11 N -0.471 5.471 12 C -0.015 4.015 13 C -0.099 4.099 14 C -0.015 4.015 15 C -0.086 4.086 16 C -0.128 4.128 17 C -0.143 4.143 18 C -0.138 4.138 19 C 0.579 3.421 20 O -0.536 6.536 21 N -0.619 5.619 22 C 0.090 3.910 23 C -0.136 4.136 24 C -0.134 4.134 25 C 0.105 3.895 26 C -0.059 4.059 27 C -0.108 4.108 28 H 0.283 0.717 29 H 0.128 0.872 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.124 0.876 33 H 0.152 0.848 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.136 0.864 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.198 -3.644 -12.073 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.480 4.480 8 H 0.101 0.899 9 C 0.054 3.946 10 C -0.169 4.169 11 N -0.178 5.178 12 C -0.173 4.173 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.104 4.104 16 C -0.146 4.146 17 C -0.160 4.160 18 C -0.141 4.141 19 C 0.370 3.630 20 O -0.413 6.413 21 N -0.355 5.355 22 C -0.033 4.033 23 C -0.174 4.174 24 C -0.172 4.172 25 C -0.018 4.018 26 C -0.078 4.078 27 C -0.134 4.134 28 H 0.094 0.906 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.152 0.848 32 H 0.142 0.858 33 H 0.169 0.831 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.154 0.846 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.782 -4.784 -11.328 19.228 hybrid contribution -0.037 1.742 -0.288 1.766 sum -14.819 -3.042 -11.617 19.074 Atomic orbital electron populations 1.69746 1.07528 1.29467 1.35841 1.25949 0.94914 1.01522 0.92134 0.86179 0.80391 0.80075 0.79362 1.19222 1.20177 1.18464 1.19550 0.96198 0.90037 1.42250 0.89855 1.18500 0.92452 0.93854 0.89770 1.22658 1.01808 0.88545 1.03938 1.66987 1.07361 1.30114 1.13348 1.21884 0.95834 0.96177 1.03422 1.19433 0.94589 0.95801 1.00343 1.18942 0.94472 0.92299 0.95847 1.21652 0.95011 0.98948 0.94823 1.21013 0.96177 0.97390 1.00000 1.22524 1.01334 0.92144 1.00037 1.19582 0.98136 0.92499 1.03920 1.18135 0.78457 0.88814 0.77612 1.90769 1.64552 1.38449 1.47552 1.48317 1.32035 1.08550 1.46553 1.22560 0.94853 0.89834 0.96005 1.22742 0.97998 0.97221 0.99437 1.22797 0.96217 0.97231 1.00980 1.22229 0.91622 0.87432 1.00497 1.21352 0.92986 0.98198 0.95257 1.21883 0.97253 0.95534 0.98718 0.90623 0.85408 0.85804 0.84815 0.85820 0.83080 0.90158 0.90071 0.90305 0.89792 0.89735 0.90483 0.91399 0.90174 0.84603 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.40 10.82 55.55 0.60 -18.80 16 2 C 0.07 1.71 5.28 -17.34 -0.09 1.61 16 3 Si 0.92 17.73 29.57 -169.99 -5.03 12.70 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.45 -11.32 9.09 -37.73 -0.34 -11.66 16 8 H 0.08 2.00 7.87 -52.49 -0.41 1.58 16 9 C 0.06 1.51 5.57 -106.71 -0.59 0.92 16 10 C -0.01 -0.22 10.96 -16.73 -0.18 -0.40 16 11 N -0.47 -11.85 10.32 -12.29 -0.13 -11.97 16 12 C -0.02 -0.36 10.59 -16.97 -0.18 -0.54 16 13 C -0.10 -2.31 5.88 -104.82 -0.62 -2.93 16 14 C -0.01 -0.29 5.87 -104.95 -0.62 -0.91 16 15 C -0.09 -1.52 9.43 -39.18 -0.37 -1.89 16 16 C -0.13 -1.80 10.02 -39.69 -0.40 -2.19 16 17 C -0.14 -1.90 8.61 -39.13 -0.34 -2.24 16 18 C -0.14 -2.25 5.87 -105.01 -0.62 -2.86 16 19 C 0.58 9.27 7.81 -12.32 -0.10 9.18 16 20 O -0.54 -10.41 16.59 5.32 0.09 -10.32 16 21 N -0.62 -7.33 3.33 -176.50 -0.59 -7.92 16 22 C 0.09 0.72 4.86 -3.07 -0.01 0.71 16 23 C -0.14 -0.73 6.95 -24.90 -0.17 -0.90 16 24 C -0.13 -0.81 7.08 -24.58 -0.17 -0.98 16 25 C 0.10 0.99 6.94 -2.52 -0.02 0.97 16 26 C -0.06 -1.11 8.98 -38.85 -0.35 -1.46 16 27 C -0.11 -2.69 8.13 -38.24 -0.31 -3.01 16 28 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 29 H 0.13 2.96 8.06 -52.49 -0.42 2.54 16 30 H 0.12 2.70 6.19 -52.48 -0.33 2.38 16 31 H 0.13 2.42 6.25 -52.49 -0.33 2.09 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.15 1.47 2.72 -58.80 -0.16 1.31 16 34 H 0.08 0.61 6.77 -51.93 -0.35 0.26 16 35 H 0.08 0.62 6.71 -51.93 -0.35 0.27 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.85 7.98 -51.93 -0.41 0.43 16 42 H 0.14 2.63 5.81 -52.49 -0.31 2.33 16 43 H 0.14 3.32 4.48 -52.49 -0.24 3.09 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -30.48 349.80 -10.24 -40.72 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.97 Total: 8.91 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -5.48 Total: -18.59 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.11 Total: -38.69 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.48 -10.24 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240059608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.900 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds