Wall clock time and date at job start Tue Mar 31 2020 14:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48496 * 109.47467 * 275.00478 * 3 2 1 5 5 H 1.48499 * 109.47048 * 35.00736 * 3 2 1 6 6 H 1.48502 * 109.46941 * 155.00556 * 3 2 1 7 7 C 1.40031 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99896 * 174.93726 * 7 2 1 9 9 C 1.41428 * 120.00175 * 355.20610 * 7 2 1 10 10 C 1.40476 * 119.77661 * 184.51682 * 9 7 2 11 11 C 1.39307 * 118.83345 * 179.73803 * 10 9 7 12 12 C 1.48402 * 120.81992 * 180.25522 * 11 10 9 13 13 C 1.39461 * 120.04812 * 0.02562 * 12 11 10 14 14 C 1.38118 * 120.16487 * 179.74171 * 13 12 11 15 15 C 1.38059 * 120.27733 * 0.55602 * 14 13 12 16 16 C 1.39626 * 120.09554 * 359.69472 * 15 14 13 17 17 C 1.47864 * 120.08583 * 180.02562 * 16 15 14 18 18 O 1.21546 * 119.99863 * 171.98911 * 17 16 15 19 19 N 1.34779 * 120.00037 * 351.98463 * 17 16 15 20 20 C 1.47023 * 125.64761 * 4.93083 * 19 17 16 21 21 C 1.54309 * 107.27832 * 180.96221 * 20 19 17 22 22 C 1.55158 * 102.86340 * 22.52716 * 21 20 19 23 23 C 1.47422 * 125.65170 * 185.23256 * 19 17 16 24 24 C 1.39060 * 120.04873 * 180.27363 * 12 11 10 25 25 C 1.40027 * 118.35565 * 0.52366 * 11 10 9 26 26 C 1.38506 * 119.42627 * 359.73619 * 25 11 10 27 27 N 1.31473 * 121.14750 * 359.97438 * 26 25 11 28 28 H 0.97001 * 120.00289 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.58312 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.91727 * 359.97438 * 13 12 11 31 31 H 1.08003 * 119.86077 * 180.25203 * 14 13 12 32 32 H 1.07997 * 119.95529 * 179.72258 * 15 14 13 33 33 H 1.09003 * 109.88422 * 300.51446 * 20 19 17 34 34 H 1.09004 * 109.88265 * 61.67433 * 20 19 17 35 35 H 1.08997 * 110.93061 * 264.11628 * 21 20 19 36 36 H 1.09003 * 110.59204 * 140.78650 * 21 20 19 37 37 H 1.08996 * 111.00935 * 206.23142 * 22 21 20 38 38 H 1.09004 * 111.00271 * 82.37200 * 22 21 20 39 39 H 1.09005 * 110.36874 * 274.68017 * 23 19 17 40 40 H 1.09001 * 110.36304 * 36.89030 * 23 19 17 41 41 H 1.08001 * 120.14024 * 359.96179 * 24 12 11 42 42 H 1.08004 * 120.28523 * 179.70622 * 25 11 10 43 43 H 1.08003 * 119.43120 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3831 2.1076 -1.3947 5 1 1.4957 2.6198 0.8032 6 1 3.5878 1.4119 0.5916 7 6 2.0075 -1.2127 -0.0005 8 1 3.0844 -1.2145 -0.0831 9 6 1.3041 -2.4354 0.1013 10 6 2.0149 -3.6434 0.1961 11 6 1.3022 -4.8358 0.3011 12 6 2.0083 -6.1365 0.4094 13 6 3.4024 -6.1766 0.4075 14 6 4.0620 -7.3855 0.5136 15 6 3.3470 -8.5625 0.6105 16 6 1.9510 -8.5359 0.6083 17 6 1.1854 -9.7965 0.7127 18 8 -0.0210 -9.7647 0.8572 19 7 1.8253 -10.9810 0.6476 20 6 3.2823 -11.1650 0.5778 21 6 3.5491 -12.6825 0.4939 22 6 2.2097 -13.2387 -0.0575 23 6 1.1800 -12.3063 0.6282 24 6 1.2809 -7.3176 0.5077 25 6 -0.0968 -4.7770 0.2962 26 6 -0.7259 -3.5474 0.1937 27 7 -0.0324 -2.4343 0.1015 28 1 -0.4850 0.8400 0.0004 29 1 3.0948 -3.6473 0.1916 30 1 3.9675 -5.2599 0.3267 31 1 5.1418 -7.4105 0.5157 32 1 3.8682 -9.5052 0.6887 33 1 3.6768 -10.6677 -0.3083 34 1 3.7508 -10.7572 1.4736 35 1 3.7614 -13.0957 1.4799 36 1 4.3665 -12.8905 -0.1967 37 1 2.0619 -14.2748 0.2470 38 1 2.1632 -13.1414 -1.1422 39 1 0.9790 -12.6453 1.6445 40 1 0.2558 -12.2698 0.0515 41 1 0.2012 -7.2913 0.5061 42 1 -0.6802 -5.6828 0.3711 43 1 -1.8050 -3.5020 0.1903 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240059846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:57 Heat of formation + Delta-G solvation = 27.708415 kcal Electronic energy + Delta-G solvation = -25450.184006 eV Core-core repulsion = 21845.892770 eV Total energy + Delta-G solvation = -3604.291236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66134 -40.40381 -39.16583 -38.41334 -35.64194 -34.28821 -32.85924 -32.26622 -31.63625 -30.78968 -29.47472 -27.72253 -26.03341 -24.58937 -24.01812 -22.70243 -22.29185 -21.89390 -20.85564 -19.36898 -18.08774 -17.83613 -17.54365 -17.10751 -16.88330 -16.31681 -16.01684 -15.79539 -15.44858 -15.17486 -14.91193 -14.55005 -14.42884 -14.38913 -14.31077 -13.97845 -13.78436 -13.56153 -13.29272 -13.09291 -12.92559 -12.85485 -12.55188 -12.45804 -12.13606 -11.97966 -11.67885 -11.60434 -11.46733 -11.31886 -11.06765 -10.84316 -10.10020 -9.70046 -9.64851 -9.55650 -9.16783 -8.32420 -6.55158 -0.27766 0.04575 0.84933 1.25447 1.40612 1.51937 1.56852 1.81362 1.87083 2.22173 2.75480 2.96895 3.34330 3.58768 3.70376 3.81393 3.89088 3.91335 4.03833 4.08520 4.20655 4.26587 4.28817 4.38285 4.48930 4.55676 4.57325 4.66798 4.81164 4.85067 4.92260 4.94955 4.98963 4.99990 5.12945 5.16261 5.20294 5.27950 5.32487 5.39345 5.43638 5.45782 5.58982 5.83476 5.93275 6.08672 6.24561 6.33476 6.70278 6.90789 6.97747 8.13564 8.43554 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.031682 B = 0.002420 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.578582 B =11567.933671 C =12380.775687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.020 3.980 3 Si 0.991 3.009 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.251 1.251 7 C -0.464 4.464 8 H 0.095 0.905 9 C 0.220 3.780 10 C -0.266 4.266 11 C -0.001 4.001 12 C -0.058 4.058 13 C -0.090 4.090 14 C -0.113 4.113 15 C -0.113 4.113 16 C -0.148 4.148 17 C 0.568 3.432 18 O -0.588 6.588 19 N -0.613 5.613 20 C 0.071 3.929 21 C -0.124 4.124 22 C -0.125 4.125 23 C 0.093 3.907 24 C -0.070 4.070 25 C -0.308 4.308 26 C 0.107 3.893 27 N -0.520 5.520 28 H 0.279 0.721 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.175 0.825 32 H 0.197 0.803 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.453 -23.499 0.569 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.201 4.201 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.174 1.174 7 C -0.495 4.495 8 H 0.113 0.887 9 C 0.095 3.905 10 C -0.288 4.288 11 C -0.007 4.007 12 C -0.058 4.058 13 C -0.108 4.108 14 C -0.131 4.131 15 C -0.130 4.130 16 C -0.151 4.151 17 C 0.359 3.641 18 O -0.470 6.470 19 N -0.346 5.346 20 C -0.049 4.049 21 C -0.162 4.162 22 C -0.163 4.163 23 C -0.028 4.028 24 C -0.089 4.089 25 C -0.331 4.331 26 C -0.057 4.057 27 N -0.233 5.233 28 H 0.090 0.910 29 H 0.141 0.859 30 H 0.154 0.846 31 H 0.192 0.808 32 H 0.214 0.786 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 12.184 -22.493 0.581 25.588 hybrid contribution -0.485 0.384 0.079 0.623 sum 11.700 -22.109 0.660 25.023 Atomic orbital electron populations 1.70248 1.09121 1.29205 1.29452 1.27096 0.95740 1.04874 0.92431 0.85072 0.79155 0.75396 0.79333 1.18666 1.19464 1.17423 1.20016 0.95195 0.90181 1.44103 0.88697 1.19079 0.88742 0.93331 0.89318 1.21996 0.99507 0.92339 1.14972 1.18918 0.93162 0.92035 0.96588 1.18905 0.94321 0.91281 1.01277 1.21797 0.92590 1.00333 0.96126 1.21529 1.02061 0.90450 0.99036 1.23130 0.91739 1.02346 0.95769 1.19765 0.95344 0.91761 1.08248 1.18207 0.86228 0.83626 0.76045 1.90741 1.16320 1.87671 1.52265 1.48436 1.09333 1.05066 1.71727 1.22952 0.79090 0.99627 1.03264 1.22756 0.98143 0.91486 1.03817 1.22800 0.93478 0.99403 1.00582 1.22479 0.97445 0.81467 1.01438 1.21247 0.99964 0.91195 0.96485 1.21627 0.94376 0.98283 1.18771 1.22827 0.99789 0.88864 0.94192 1.68676 1.08178 1.27988 1.18506 0.91025 0.85941 0.84630 0.80777 0.78641 0.88840 0.88589 0.88963 0.87255 0.87459 0.90455 0.90915 0.92358 0.87028 0.86963 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.19 11.48 21.84 0.25 -41.94 16 2 C 0.02 1.04 5.49 85.29 0.47 1.51 16 3 Si 0.99 38.33 29.56 68.60 2.03 40.36 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.46 -25.43 9.14 23.49 0.21 -25.21 16 8 H 0.09 4.75 7.85 -2.91 -0.02 4.73 16 9 C 0.22 12.60 6.55 40.20 0.26 12.86 16 10 C -0.27 -13.34 9.22 23.07 0.21 -13.12 16 11 C 0.00 -0.04 5.91 -19.88 -0.12 -0.16 16 12 C -0.06 -2.23 5.87 -20.08 -0.12 -2.35 16 13 C -0.09 -2.73 9.44 22.54 0.21 -2.52 16 14 C -0.11 -2.38 10.02 22.20 0.22 -2.16 16 15 C -0.11 -2.35 8.59 22.56 0.19 -2.15 16 16 C -0.15 -4.47 5.87 -20.11 -0.12 -4.59 16 17 C 0.57 17.55 7.81 86.79 0.68 18.23 16 18 O -0.59 -23.54 16.67 -3.86 -0.06 -23.61 16 19 N -0.61 -12.65 3.33 -827.35 -2.75 -15.40 16 20 C 0.07 0.73 4.87 86.72 0.42 1.15 16 21 C -0.12 -0.56 6.95 31.78 0.22 -0.34 16 22 C -0.12 -0.95 7.08 31.99 0.23 -0.72 16 23 C 0.09 1.55 6.89 86.86 0.60 2.15 16 24 C -0.07 -2.61 8.99 22.75 0.20 -2.40 16 25 C -0.31 -15.06 9.51 22.77 0.22 -14.84 16 26 C 0.11 5.63 11.17 84.81 0.95 6.58 16 27 N -0.52 -30.63 7.86 -189.36 -1.49 -32.12 16 28 H 0.28 14.00 8.29 -92.71 -0.77 13.23 16 29 H 0.12 5.43 6.32 -2.91 -0.02 5.41 16 30 H 0.14 3.94 6.27 -2.91 -0.02 3.92 16 31 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.20 2.31 2.76 -7.59 -0.02 2.29 16 33 H 0.09 0.79 6.70 -2.39 -0.02 0.78 16 34 H 0.10 0.74 6.77 -2.38 -0.02 0.72 16 35 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 41 H 0.11 4.64 5.89 -2.91 -0.02 4.62 16 42 H 0.11 5.07 6.32 -2.91 -0.02 5.05 16 43 H 0.14 6.41 8.06 -2.91 -0.02 6.38 16 Total: -1.00 -78.93 351.67 3.96 -74.96 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 1.04 Total: 25.84 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 4.95 Total: -28.10 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -3.99 Total: -89.46 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.06 Total: -23.61 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -78.93 3.96 -74.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240059846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.672 kcal (2) G-P(sol) polarization free energy of solvation -78.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds