Wall clock time and date at job start Tue Mar 31 2020 14:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86798 * 120.00452 * 2 1 4 4 H 1.48497 * 109.47192 * 240.00018 * 3 2 1 5 5 H 1.48502 * 109.46675 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46904 * 119.99578 * 3 2 1 7 7 C 1.40156 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99787 * 179.97438 * 7 2 1 9 9 C 1.40821 * 120.00193 * 0.02562 * 7 2 1 10 10 N 1.33702 * 119.93585 * 359.97438 * 9 7 2 11 11 C 1.31282 * 121.63458 * 179.97438 * 10 9 7 12 12 C 1.39062 * 121.33440 * 0.02562 * 11 10 9 13 13 C 1.38392 * 119.72628 * 0.27643 * 12 11 10 14 14 C 1.39670 * 118.47417 * 359.47673 * 13 12 11 15 15 C 1.47846 * 120.64746 * 180.22314 * 14 13 12 16 16 C 1.39792 * 120.07872 * 130.27749 * 15 14 13 17 17 C 1.38010 * 120.13672 * 180.02562 * 16 15 14 18 18 C 1.38148 * 120.31151 * 359.96115 * 17 16 15 19 19 C 1.39694 * 120.15755 * 0.04065 * 18 17 16 20 20 C 1.47869 * 120.07085 * 180.02562 * 19 18 17 21 21 O 1.21548 * 120.00209 * 171.99833 * 20 19 18 22 22 N 1.34773 * 119.99639 * 351.99232 * 20 19 18 23 23 C 1.47023 * 125.65212 * 4.93097 * 22 20 19 24 24 C 1.54320 * 107.27748 * 180.96274 * 23 22 20 25 25 C 1.55160 * 102.86053 * 22.52931 * 24 23 22 26 26 C 1.47436 * 125.64604 * 185.23392 * 22 20 19 27 27 C 1.39308 * 119.85623 * 359.70201 * 19 18 17 28 28 H 0.97004 * 119.99800 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.33083 * 180.02562 * 11 10 9 30 30 H 1.08000 * 120.13518 * 179.97438 * 12 11 10 31 31 H 1.08002 * 120.76291 * 179.72705 * 13 12 11 32 32 H 1.08002 * 119.93439 * 0.02562 * 16 15 14 33 33 H 1.07998 * 119.84664 * 179.97438 * 17 16 15 34 34 H 1.07996 * 119.92390 * 180.02562 * 18 17 16 35 35 H 1.08995 * 109.88005 * 300.50803 * 23 22 20 36 36 H 1.09004 * 109.88126 * 61.67533 * 23 22 20 37 37 H 1.08998 * 110.92685 * 264.11119 * 24 23 22 38 38 H 1.09001 * 110.58564 * 140.78145 * 24 23 22 39 39 H 1.09001 * 110.99708 * 206.23121 * 25 24 23 40 40 H 1.09000 * 111.00840 * 82.37743 * 25 24 23 41 41 H 1.09002 * 110.36515 * 274.67677 * 26 22 20 42 42 H 1.08994 * 110.36552 * 36.88995 * 26 22 20 43 43 H 1.08009 * 120.14499 * 180.27357 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6176 0.0000 4 1 3.0948 1.6963 -1.2125 5 1 1.2760 2.7464 0.0006 6 1 3.0947 1.6962 1.2126 7 6 2.0076 -1.2138 0.0005 8 1 3.0876 -1.2139 0.0001 9 6 1.3034 -2.4334 0.0005 10 7 -0.0336 -2.4318 0.0005 11 6 -0.7234 -3.5488 0.0000 12 6 -0.0929 -4.7882 0.0000 13 6 1.2894 -4.8549 0.0063 14 6 2.0137 -3.6607 0.0014 15 6 3.4921 -3.6759 0.0028 16 6 4.2016 -2.9055 -0.9231 17 6 5.5816 -2.9192 -0.9232 18 6 6.2713 -3.6924 -0.0094 19 6 5.5750 -4.4672 0.9215 20 6 6.3152 -5.2937 1.8990 21 8 5.7180 -5.8518 2.7986 22 7 7.6519 -5.4281 1.7925 23 6 8.5086 -4.7316 0.8216 24 6 9.9551 -5.2146 1.0574 25 6 9.7521 -6.5817 1.7626 26 6 8.4966 -6.3029 2.6261 27 6 4.1821 -4.4543 0.9311 28 1 -0.4850 0.8401 0.0004 29 1 -1.8025 -3.5041 -0.0004 30 1 -0.6795 -5.6950 0.0000 31 1 1.7965 -5.8085 0.0108 32 1 3.6687 -2.2982 -1.6398 33 1 6.1250 -2.3225 -1.6408 34 1 7.3512 -3.6981 -0.0148 35 1 8.1945 -4.9770 -0.1928 36 1 8.4489 -3.6548 0.9802 37 1 10.4958 -4.5236 1.7041 38 1 10.4756 -5.3438 0.1084 39 1 10.6095 -6.8295 2.3884 40 1 9.5593 -7.3712 1.0363 41 1 8.7760 -5.7935 3.5484 42 1 7.9743 -7.2328 2.8505 43 1 3.6391 -5.0481 1.6516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240060945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:54 Heat of formation + Delta-G solvation = 45.965985 kcal Electronic energy + Delta-G solvation = -26178.661340 eV Core-core repulsion = 22575.161812 eV Total energy + Delta-G solvation = -3603.499528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39550 -38.76264 -37.60744 -37.11985 -33.76511 -32.77096 -31.56588 -30.70155 -30.17164 -29.61489 -28.10251 -25.84293 -24.74041 -23.01344 -22.21054 -21.53435 -21.11300 -20.46314 -19.52406 -17.58317 -16.98726 -16.69165 -16.00390 -15.78601 -15.33153 -14.59335 -14.46932 -14.44651 -14.06950 -13.91729 -13.70683 -13.45422 -13.31095 -12.89305 -12.72958 -12.49670 -12.24146 -12.13196 -11.87605 -11.66496 -11.50887 -11.25698 -11.17044 -11.15489 -11.06433 -10.77204 -10.55396 -10.33111 -9.94482 -9.69024 -9.46689 -8.78729 -8.69841 -8.38861 -8.07053 -7.66482 -7.37305 -6.51948 -4.61227 1.32255 1.79949 2.68019 2.89663 2.94292 3.02089 3.04129 3.17064 3.23741 3.85806 4.20864 4.27547 4.36606 4.61596 4.65848 4.83587 4.97129 5.06730 5.27824 5.34209 5.38719 5.42751 5.52819 5.58385 5.66660 5.73040 5.79297 5.84089 5.94278 5.99175 6.05858 6.12677 6.21355 6.39846 6.49887 6.55860 6.74973 6.80197 6.88264 7.02439 7.15187 7.27064 7.42130 7.48450 7.56724 7.70353 7.95701 8.13790 8.28058 8.53448 8.82190 9.99866 10.18504 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.003606 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.968247 B = 7762.268314 C = 9030.982360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.069 3.931 3 Si 0.904 3.096 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.422 4.422 8 H 0.093 0.907 9 C 0.270 3.730 10 N -0.482 5.482 11 C 0.134 3.866 12 C -0.320 4.320 13 C -0.030 4.030 14 C -0.241 4.241 15 C 0.020 3.980 16 C -0.082 4.082 17 C -0.133 4.133 18 C -0.151 4.151 19 C -0.140 4.140 20 C 0.579 3.421 21 O -0.539 6.539 22 N -0.620 5.620 23 C 0.091 3.909 24 C -0.136 4.136 25 C -0.134 4.134 26 C 0.106 3.894 27 C -0.068 4.068 28 H 0.276 0.724 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.148 0.852 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.423 -5.612 -1.227 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.158 4.158 3 Si 0.728 3.272 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.451 4.451 8 H 0.111 0.889 9 C 0.147 3.853 10 N -0.193 5.193 11 C -0.035 4.035 12 C -0.343 4.343 13 C -0.054 4.054 14 C -0.246 4.246 15 C 0.019 3.981 16 C -0.101 4.101 17 C -0.151 4.151 18 C -0.169 4.169 19 C -0.143 4.143 20 C 0.370 3.630 21 O -0.417 6.417 22 N -0.355 5.355 23 C -0.031 4.031 24 C -0.174 4.174 25 C -0.172 4.172 26 C -0.017 4.017 27 C -0.087 4.087 28 H 0.087 0.913 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.165 0.835 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 16.411 -4.900 -0.723 17.142 hybrid contribution 0.675 -0.095 0.035 0.683 sum 17.086 -4.996 -0.687 17.815 Atomic orbital electron populations 1.70100 1.07312 1.28233 1.27057 1.26148 0.94894 1.01250 0.93540 0.86417 0.80250 0.80340 0.80187 1.18634 1.20040 1.18723 1.19779 0.94878 0.89284 1.41191 0.88931 1.18496 0.87997 0.90855 0.87993 1.68776 1.06994 1.26574 1.16950 1.22630 0.98867 0.88855 0.93136 1.21236 0.94545 0.97925 1.20558 1.20904 0.93829 0.95737 0.94952 1.19299 0.90411 0.94612 1.20294 1.18694 0.93091 0.93590 0.92717 1.21692 0.93505 0.97174 0.97689 1.20979 0.94404 1.00100 0.99579 1.22409 1.01436 0.97366 0.95659 1.19526 0.94055 1.01951 0.98776 1.18229 0.79741 0.80522 0.84475 1.90754 1.67381 1.48867 1.34696 1.48333 1.05983 1.45147 1.36043 1.22558 0.89856 0.97110 0.93608 1.22745 0.95732 0.97167 1.01774 1.22794 0.97492 0.97551 0.99352 1.22202 0.90661 0.94855 0.93952 1.21398 0.91862 0.98111 0.97349 0.91293 0.86277 0.88582 0.88479 0.84997 0.86232 0.83540 0.90054 0.90210 0.90393 0.89834 0.89812 0.90515 0.91522 0.90417 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.32 11.46 55.56 0.64 -17.68 16 2 C 0.07 1.69 5.50 -17.32 -0.10 1.60 16 3 Si 0.90 18.09 29.56 -169.99 -5.03 13.07 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.42 -10.83 7.96 -37.89 -0.30 -11.14 16 8 H 0.09 2.24 5.23 -52.48 -0.27 1.96 16 9 C 0.27 7.18 6.56 -84.71 -0.56 6.63 16 10 N -0.48 -13.07 7.85 -10.91 -0.09 -13.15 16 11 C 0.13 3.21 11.17 -17.48 -0.20 3.02 16 12 C -0.32 -7.16 10.10 -39.22 -0.40 -7.56 16 13 C -0.03 -0.68 9.66 -38.99 -0.38 -1.06 16 14 C -0.24 -5.82 5.53 -104.07 -0.58 -6.39 16 15 C 0.02 0.42 5.03 -104.95 -0.53 -0.10 16 16 C -0.08 -1.57 7.55 -39.08 -0.30 -1.86 16 17 C -0.13 -2.06 10.02 -39.70 -0.40 -2.46 16 18 C -0.15 -2.23 8.60 -39.07 -0.34 -2.57 16 19 C -0.14 -2.48 5.87 -105.01 -0.62 -3.09 16 20 C 0.58 10.01 7.81 -12.32 -0.10 9.92 16 21 O -0.54 -11.16 16.66 5.32 0.09 -11.08 16 22 N -0.62 -8.00 3.33 -175.61 -0.58 -8.59 16 23 C 0.09 0.83 4.86 -3.07 -0.01 0.82 16 24 C -0.14 -0.85 6.95 -24.90 -0.17 -1.02 16 25 C -0.13 -0.90 7.08 -24.58 -0.17 -1.07 16 26 C 0.11 1.09 6.89 -2.52 -0.02 1.07 16 27 C -0.07 -1.38 9.09 -38.75 -0.35 -1.73 16 28 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16 29 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 30 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.13 2.57 7.22 -52.49 -0.38 2.19 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.15 1.63 2.75 -57.66 -0.16 1.48 16 35 H 0.08 0.71 6.69 -51.93 -0.35 0.36 16 36 H 0.08 0.70 6.77 -51.93 -0.35 0.35 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.87 8.09 -51.93 -0.42 0.46 16 43 H 0.13 2.69 7.66 -52.48 -0.40 2.29 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -31.52 352.05 -10.43 -41.95 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.27 Total: 7.18 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -5.50 Total: -17.01 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.03 Total: -39.42 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.52 -10.43 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240060945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.915 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds