Wall clock time and date at job start Tue Mar 31 2020 14:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86798 * 120.00452 * 2 1 4 4 H 1.48497 * 109.47192 * 240.00018 * 3 2 1 5 5 H 1.48502 * 109.46675 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46904 * 119.99578 * 3 2 1 7 7 C 1.40156 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99787 * 179.97438 * 7 2 1 9 9 C 1.40821 * 120.00193 * 0.02562 * 7 2 1 10 10 N 1.33702 * 119.93585 * 359.97438 * 9 7 2 11 11 C 1.31282 * 121.63458 * 179.97438 * 10 9 7 12 12 C 1.39062 * 121.33440 * 0.02562 * 11 10 9 13 13 C 1.38392 * 119.72628 * 0.27643 * 12 11 10 14 14 C 1.39670 * 118.47417 * 359.47673 * 13 12 11 15 15 C 1.47846 * 120.64746 * 180.22314 * 14 13 12 16 16 C 1.39792 * 120.07872 * 130.27749 * 15 14 13 17 17 C 1.38010 * 120.13672 * 180.02562 * 16 15 14 18 18 C 1.38148 * 120.31151 * 359.96115 * 17 16 15 19 19 C 1.39694 * 120.15755 * 0.04065 * 18 17 16 20 20 C 1.47869 * 120.07085 * 180.02562 * 19 18 17 21 21 O 1.21548 * 120.00209 * 171.99833 * 20 19 18 22 22 N 1.34773 * 119.99639 * 351.99232 * 20 19 18 23 23 C 1.47023 * 125.65212 * 4.93097 * 22 20 19 24 24 C 1.54320 * 107.27748 * 180.96274 * 23 22 20 25 25 C 1.55160 * 102.86053 * 22.52931 * 24 23 22 26 26 C 1.47436 * 125.64604 * 185.23392 * 22 20 19 27 27 C 1.39308 * 119.85623 * 359.70201 * 19 18 17 28 28 H 0.97004 * 119.99800 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.33083 * 180.02562 * 11 10 9 30 30 H 1.08000 * 120.13518 * 179.97438 * 12 11 10 31 31 H 1.08002 * 120.76291 * 179.72705 * 13 12 11 32 32 H 1.08002 * 119.93439 * 0.02562 * 16 15 14 33 33 H 1.07998 * 119.84664 * 179.97438 * 17 16 15 34 34 H 1.07996 * 119.92390 * 180.02562 * 18 17 16 35 35 H 1.08995 * 109.88005 * 300.50803 * 23 22 20 36 36 H 1.09004 * 109.88126 * 61.67533 * 23 22 20 37 37 H 1.08998 * 110.92685 * 264.11119 * 24 23 22 38 38 H 1.09001 * 110.58564 * 140.78145 * 24 23 22 39 39 H 1.09001 * 110.99708 * 206.23121 * 25 24 23 40 40 H 1.09000 * 111.00840 * 82.37743 * 25 24 23 41 41 H 1.09002 * 110.36515 * 274.67677 * 26 22 20 42 42 H 1.08994 * 110.36552 * 36.88995 * 26 22 20 43 43 H 1.08009 * 120.14499 * 180.27357 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6176 0.0000 4 1 3.0948 1.6963 -1.2125 5 1 1.2760 2.7464 0.0006 6 1 3.0947 1.6962 1.2126 7 6 2.0076 -1.2138 0.0005 8 1 3.0876 -1.2139 0.0001 9 6 1.3034 -2.4334 0.0005 10 7 -0.0336 -2.4318 0.0005 11 6 -0.7234 -3.5488 0.0000 12 6 -0.0929 -4.7882 0.0000 13 6 1.2894 -4.8549 0.0063 14 6 2.0137 -3.6607 0.0014 15 6 3.4921 -3.6759 0.0028 16 6 4.2016 -2.9055 -0.9231 17 6 5.5816 -2.9192 -0.9232 18 6 6.2713 -3.6924 -0.0094 19 6 5.5750 -4.4672 0.9215 20 6 6.3152 -5.2937 1.8990 21 8 5.7180 -5.8518 2.7986 22 7 7.6519 -5.4281 1.7925 23 6 8.5086 -4.7316 0.8216 24 6 9.9551 -5.2146 1.0574 25 6 9.7521 -6.5817 1.7626 26 6 8.4966 -6.3029 2.6261 27 6 4.1821 -4.4543 0.9311 28 1 -0.4850 0.8401 0.0004 29 1 -1.8025 -3.5041 -0.0004 30 1 -0.6795 -5.6950 0.0000 31 1 1.7965 -5.8085 0.0108 32 1 3.6687 -2.2982 -1.6398 33 1 6.1250 -2.3225 -1.6408 34 1 7.3512 -3.6981 -0.0148 35 1 8.1945 -4.9770 -0.1928 36 1 8.4489 -3.6548 0.9802 37 1 10.4958 -4.5236 1.7041 38 1 10.4756 -5.3438 0.1084 39 1 10.6095 -6.8295 2.3884 40 1 9.5593 -7.3712 1.0363 41 1 8.7760 -5.7935 3.5484 42 1 7.9743 -7.2328 2.8505 43 1 3.6391 -5.0481 1.6516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240060945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:53 Heat of formation + Delta-G solvation = 28.284507 kcal Electronic energy + Delta-G solvation = -26179.428067 eV Core-core repulsion = 22575.161812 eV Total energy + Delta-G solvation = -3604.266255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.57879 -40.37208 -38.99444 -38.36615 -35.59991 -34.19391 -32.80964 -32.23826 -31.69888 -30.71778 -29.42518 -27.65539 -25.86565 -24.55201 -23.54422 -23.00090 -22.14195 -21.86752 -20.72343 -19.43876 -18.26388 -17.60957 -17.48964 -17.26700 -16.71349 -16.20970 -16.17132 -15.73743 -15.39931 -15.30866 -14.73627 -14.51409 -14.42446 -14.23681 -14.05569 -13.94719 -13.71553 -13.41798 -13.30548 -12.97908 -12.87626 -12.82668 -12.73582 -12.24886 -12.10620 -12.09199 -11.76540 -11.58803 -11.38346 -11.25101 -11.01501 -10.39871 -9.98266 -9.86690 -9.63152 -9.54801 -9.10424 -8.34248 -6.51291 -0.08622 0.29690 0.92919 1.16309 1.38831 1.51275 1.54405 1.82440 1.90981 2.20046 2.80975 2.95890 3.40843 3.62756 3.81365 3.87835 4.00557 4.07120 4.08815 4.21807 4.27682 4.28627 4.42668 4.44831 4.51095 4.59312 4.60750 4.75055 4.83220 4.88668 4.96087 4.96462 5.03557 5.09058 5.15329 5.16695 5.25359 5.33335 5.38696 5.46679 5.53502 5.57655 5.75725 5.90923 6.06328 6.13123 6.26688 6.36865 6.68077 6.93356 7.02326 8.12435 8.39224 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.003606 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.968247 B = 7762.268314 C = 9030.982360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.024 3.976 3 Si 0.980 3.020 4 H -0.247 1.247 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.448 4.448 8 H 0.101 0.899 9 C 0.237 3.763 10 N -0.519 5.519 11 C 0.111 3.889 12 C -0.315 4.315 13 C -0.046 4.046 14 C -0.247 4.247 15 C -0.009 4.009 16 C -0.092 4.092 17 C -0.118 4.118 18 C -0.127 4.127 19 C -0.147 4.147 20 C 0.569 3.431 21 O -0.590 6.590 22 N -0.614 5.614 23 C 0.072 3.928 24 C -0.124 4.124 25 C -0.123 4.123 26 C 0.093 3.907 27 C -0.086 4.086 28 H 0.281 0.719 29 H 0.140 0.860 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.166 0.834 34 H 0.194 0.806 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.015 -4.954 -2.456 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.170 1.170 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.478 4.478 8 H 0.118 0.882 9 C 0.113 3.887 10 N -0.231 5.231 11 C -0.055 4.055 12 C -0.337 4.337 13 C -0.070 4.070 14 C -0.252 4.252 15 C -0.009 4.009 16 C -0.111 4.111 17 C -0.136 4.136 18 C -0.144 4.144 19 C -0.150 4.150 20 C 0.361 3.639 21 O -0.473 6.473 22 N -0.346 5.346 23 C -0.048 4.048 24 C -0.162 4.162 25 C -0.161 4.161 26 C -0.028 4.028 27 C -0.106 4.106 28 H 0.092 0.908 29 H 0.158 0.842 30 H 0.144 0.856 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.183 0.817 34 H 0.210 0.790 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 21.043 -4.272 -1.979 21.563 hybrid contribution -0.624 -0.471 0.439 0.897 sum 20.419 -4.743 -1.540 21.019 Atomic orbital electron populations 1.70207 1.09059 1.29430 1.28369 1.27085 0.95664 1.04681 0.92480 0.85295 0.78879 0.75430 0.80499 1.17010 1.19276 1.18688 1.20084 0.95402 0.89881 1.42463 0.88160 1.18968 0.88368 0.92347 0.89002 1.68717 1.07754 1.28164 1.18458 1.23056 0.99966 0.89019 0.93469 1.21548 0.94764 0.98540 1.18882 1.21230 0.94309 0.96335 0.95131 1.19670 0.92422 0.94295 1.18765 1.18642 0.91860 0.95764 0.94669 1.21719 0.95284 0.96832 0.97237 1.21440 0.92822 0.99475 0.99820 1.22994 1.03581 0.94599 0.93187 1.19705 0.93118 1.02495 0.99653 1.18237 0.81311 0.80387 0.83990 1.90720 1.68911 1.50996 1.36637 1.48430 1.04927 1.44737 1.36515 1.22929 0.91220 0.97575 0.93121 1.22759 0.93609 0.96485 1.03318 1.22794 0.96032 0.98214 0.99056 1.22479 0.91736 0.93722 0.94892 1.21212 0.93383 0.98656 0.97334 0.90848 0.84221 0.85600 0.86735 0.86073 0.81672 0.78987 0.88900 0.89005 0.89061 0.87206 0.87396 0.90329 0.91082 0.92279 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.35 11.46 21.86 0.25 -40.10 16 2 C 0.02 1.20 5.50 85.33 0.47 1.67 16 3 Si 0.98 37.24 29.56 68.60 2.03 39.27 16 4 H -0.25 -8.67 7.11 99.48 0.71 -7.97 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.45 -23.91 7.96 23.37 0.19 -23.72 16 8 H 0.10 4.97 5.23 -2.91 -0.02 4.96 16 9 C 0.24 13.25 6.56 40.37 0.26 13.52 16 10 N -0.52 -29.59 7.85 -188.43 -1.48 -31.07 16 11 C 0.11 5.57 11.17 84.97 0.95 6.52 16 12 C -0.31 -14.46 10.10 22.50 0.23 -14.23 16 13 C -0.05 -2.17 9.66 22.65 0.22 -1.95 16 14 C -0.25 -12.51 5.53 -19.51 -0.11 -12.62 16 15 C -0.01 -0.38 5.03 -20.08 -0.10 -0.48 16 16 C -0.09 -3.48 7.55 22.59 0.17 -3.30 16 17 C -0.12 -3.26 10.02 22.19 0.22 -3.04 16 18 C -0.13 -3.31 8.60 22.60 0.19 -3.12 16 19 C -0.15 -5.11 5.87 -20.12 -0.12 -5.23 16 20 C 0.57 19.67 7.81 86.79 0.68 20.34 16 21 O -0.59 -25.58 16.66 -3.87 -0.06 -25.64 16 22 N -0.61 -14.58 3.33 -827.78 -2.75 -17.34 16 23 C 0.07 0.98 4.86 86.73 0.42 1.41 16 24 C -0.12 -0.86 6.95 31.78 0.22 -0.64 16 25 C -0.12 -1.16 7.08 31.99 0.23 -0.94 16 26 C 0.09 1.76 6.89 86.85 0.60 2.36 16 27 C -0.09 -3.66 9.09 22.81 0.21 -3.45 16 28 H 0.28 13.66 8.29 -92.71 -0.77 12.89 16 29 H 0.14 6.12 8.06 -2.91 -0.02 6.10 16 30 H 0.13 4.90 8.06 -2.91 -0.02 4.87 16 31 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 32 H 0.12 4.78 7.22 -2.91 -0.02 4.76 16 33 H 0.17 3.12 8.06 -2.91 -0.02 3.09 16 34 H 0.19 3.23 2.75 -7.77 -0.02 3.21 16 35 H 0.09 1.11 6.69 -2.39 -0.02 1.10 16 36 H 0.09 1.10 6.77 -2.38 -0.02 1.08 16 37 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 43 H 0.10 4.65 7.66 -2.91 -0.02 4.62 16 Total: -1.00 -75.75 352.05 3.94 -71.81 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 1.03 Total: 29.96 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 4.93 Total: -26.90 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -3.98 Total: -88.50 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.06 Total: -25.64 kcal Atomic # 14 Polarization: 37.24 SS G_CDS: 2.03 Total: 39.27 kcal Total: -75.75 3.94 -71.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240060945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.098 kcal (2) G-P(sol) polarization free energy of solvation -75.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds