Wall clock time and date at job start Tue Mar 31 2020 13:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 116.99889 * 2 1 4 4 O 1.20823 * 120.00359 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99579 * 179.97438 * 3 2 1 6 6 C 1.50700 * 115.56390 * 34.31298 * 5 3 2 7 7 C 1.38310 * 119.88189 * 145.41798 * 6 5 3 8 8 C 1.38022 * 120.12352 * 179.72162 * 7 6 5 9 9 C 1.39332 * 119.87582 * 0.56984 * 8 7 6 10 10 C 1.48405 * 120.12046 * 179.68328 * 9 8 7 11 11 C 1.39731 * 119.99863 * 180.02562 * 10 9 8 12 12 C 1.38393 * 120.37876 * 179.97438 * 11 10 9 13 13 C 1.37716 * 120.37908 * 359.97438 * 12 11 10 14 14 C 1.40755 * 119.98979 * 0.02562 * 13 12 11 15 15 C 1.41425 * 120.18857 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00065 * 154.79447 * 15 14 13 17 17 C 1.39934 * 119.99749 * 334.79846 * 15 14 13 18 18 N 1.30830 * 120.00234 * 342.76714 * 17 15 14 19 19 Si 1.86807 * 119.99912 * 162.76636 * 17 15 14 20 20 H 1.48493 * 109.46830 * 59.99794 * 19 17 15 21 21 H 1.48495 * 109.46892 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46926 * 300.00067 * 19 17 15 23 23 C 1.38732 * 120.00279 * 359.73958 * 10 9 8 24 24 C 1.39331 * 119.75956 * 359.70473 * 9 8 7 25 25 C 1.38024 * 119.87667 * 359.97438 * 24 9 8 26 26 C 1.53003 * 117.49503 * 179.97438 * 5 3 2 27 27 C 1.53002 * 117.49578 * 248.62176 * 5 3 2 28 28 H 1.09000 * 109.46655 * 60.00088 * 1 2 3 29 29 H 1.08998 * 109.47463 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47111 * 300.00554 * 1 2 3 31 31 H 1.08008 * 119.93830 * 359.97085 * 7 6 5 32 32 H 1.08000 * 120.06637 * 180.26896 * 8 7 6 33 33 H 1.08000 * 119.81005 * 359.97438 * 11 10 9 34 34 H 1.07994 * 119.81035 * 179.97438 * 12 11 10 35 35 H 1.08000 * 120.00548 * 180.02562 * 13 12 11 36 36 H 0.96999 * 120.00115 * 180.02562 * 18 17 15 37 37 H 1.08003 * 120.18171 * 0.02800 * 23 10 9 38 38 H 1.07995 * 120.06190 * 179.97438 * 24 9 8 39 39 H 1.07998 * 119.94068 * 179.97438 * 25 24 9 40 40 H 1.09001 * 117.50216 * 0.02562 * 26 5 3 41 41 H 1.09000 * 117.49659 * 214.97629 * 26 5 3 42 42 H 1.08998 * 117.49329 * 145.02588 * 27 5 3 43 43 H 1.08997 * 117.50147 * 0.02562 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.2748 0.1873 -0.7653 7 6 5.4499 0.4711 -1.4373 8 6 6.1058 -0.5225 -2.1355 9 6 5.5759 -1.8105 -2.1724 10 6 6.2731 -2.8813 -2.9273 11 6 5.7391 -4.1720 -2.9631 12 6 6.3823 -5.1764 -3.6651 13 6 7.5558 -4.9150 -4.3368 14 6 8.1077 -3.6203 -4.3113 15 6 9.3128 -3.3473 -4.9993 16 1 9.5295 -2.3427 -5.3310 17 6 10.2243 -4.3790 -5.2501 18 7 10.1451 -5.4995 -4.5793 19 14 11.5545 -4.1564 -6.5427 20 1 12.4122 -3.0009 -6.1764 21 1 12.3840 -5.3858 -6.6161 22 1 10.9239 -3.9057 -7.8636 23 6 7.4518 -2.5993 -3.6025 24 6 4.3889 -2.0896 -1.4984 25 6 3.7447 -1.0900 -0.7977 26 6 4.2008 2.6671 -0.0001 27 6 4.2454 1.8060 1.2646 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 5.8570 1.4712 -1.4123 32 1 7.0256 -0.3008 -2.6564 33 1 4.8191 -4.3871 -2.4399 34 1 5.9617 -6.1708 -3.6862 35 1 8.0525 -5.7031 -4.8831 36 1 10.7772 -6.2144 -4.7529 37 1 7.8649 -1.6017 -3.5803 38 1 3.9736 -3.0862 -1.5240 39 1 2.8244 -1.3050 -0.2752 40 1 3.5298 3.5260 -0.0005 41 1 5.1307 2.7961 -0.5540 42 1 5.2046 1.3689 1.5421 43 1 3.6037 2.0981 2.0958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241873462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:18 Heat of formation + Delta-G solvation = -26.801680 kcal Electronic energy + Delta-G solvation = -25440.403370 eV Core-core repulsion = 21801.455648 eV Total energy + Delta-G solvation = -3638.947722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.99578 -40.50048 -39.21997 -38.15260 -37.07202 -35.53763 -32.91595 -32.25472 -31.46479 -29.72526 -28.81460 -27.21299 -25.82152 -24.19930 -23.76763 -23.28714 -21.85653 -21.81147 -20.88206 -19.26099 -18.90604 -17.92197 -17.51853 -17.37845 -16.83045 -16.60921 -15.99946 -15.88379 -15.41825 -14.98022 -14.82023 -14.64956 -14.41182 -14.29125 -14.11378 -14.05426 -13.64069 -13.41006 -13.14194 -12.99898 -12.82347 -12.68938 -12.44154 -12.39261 -12.22269 -11.93656 -11.83067 -11.77705 -11.62864 -11.51680 -11.43268 -11.12987 -11.03786 -10.07788 -9.80952 -9.40318 -8.66101 -8.56616 -6.35107 -0.02384 0.55037 0.95105 0.99972 1.31940 1.38586 1.49594 1.55272 1.65537 2.21167 2.58750 2.76079 3.06498 3.38666 3.58215 3.65994 3.79079 3.91516 4.00529 4.07455 4.18664 4.29108 4.32460 4.42494 4.49881 4.64266 4.66005 4.68247 4.69959 4.75352 4.90262 5.00959 5.02400 5.11570 5.15523 5.20875 5.26877 5.30672 5.39505 5.48641 5.62903 5.67097 5.76885 6.02796 6.07790 6.08904 6.20762 6.39085 6.62167 6.68282 6.94014 7.01740 8.34640 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.023727 B = 0.002536 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.812211 B =11038.452296 C =11895.616340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.353 6.353 3 C 0.505 3.495 4 O -0.531 6.531 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.106 4.106 8 C -0.126 4.126 9 C -0.042 4.042 10 C -0.040 4.040 11 C -0.223 4.223 12 C -0.111 4.111 13 C -0.186 4.186 14 C 0.077 3.923 15 C -0.502 4.502 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.828 5.828 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.261 1.261 23 C -0.222 4.222 24 C -0.121 4.121 25 C -0.106 4.106 26 C -0.132 4.132 27 C -0.121 4.121 28 H 0.060 0.940 29 H 0.130 0.870 30 H 0.068 0.932 31 H 0.151 0.849 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.288 0.712 37 H 0.103 0.897 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.641 10.962 10.061 19.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C 0.350 3.650 4 O -0.421 6.421 5 C -0.121 4.121 6 C -0.066 4.066 7 C -0.124 4.124 8 C -0.144 4.144 9 C -0.042 4.042 10 C -0.040 4.040 11 C -0.242 4.242 12 C -0.129 4.129 13 C -0.205 4.205 14 C 0.075 3.925 15 C -0.532 4.532 16 H 0.094 0.906 17 C -0.179 4.179 18 N -0.454 5.454 19 Si 0.802 3.198 20 H -0.183 1.183 21 H -0.192 1.192 22 H -0.186 1.186 23 C -0.241 4.241 24 C -0.138 4.138 25 C -0.123 4.123 26 C -0.169 4.169 27 C -0.157 4.157 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.086 0.914 31 H 0.168 0.832 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.150 0.850 39 H 0.170 0.830 40 H 0.131 0.869 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.768 11.007 10.105 19.654 hybrid contribution 0.493 -0.426 -0.791 1.025 sum -12.275 10.581 9.314 18.692 Atomic orbital electron populations 1.23608 0.74896 1.05809 1.02625 1.86541 1.24833 1.32107 1.83393 1.22547 0.90160 0.81338 0.70922 1.90634 1.67128 1.37108 1.47236 1.19688 0.86580 0.98529 1.07322 1.18817 0.95699 0.92974 0.99120 1.21083 0.94852 0.99750 0.96684 1.21347 1.00454 0.92454 1.00153 1.19165 0.95004 0.93269 0.96751 1.18695 0.94648 0.93220 0.97432 1.20819 1.02565 0.92773 1.08005 1.20933 0.95512 0.98407 0.98026 1.21386 0.96594 0.98037 1.04497 1.17908 0.92521 0.92109 0.89928 1.19777 1.02786 0.96422 1.34218 0.90644 1.26738 1.00642 0.93808 0.96727 1.69870 1.34982 1.06017 1.34540 0.85269 0.77116 0.78966 0.78459 1.18309 1.19206 1.18585 1.21261 0.98955 0.99085 1.04785 1.21362 0.94640 1.00226 0.97600 1.21442 1.00479 0.91797 0.98614 1.23405 1.02704 0.90407 1.00334 1.23356 1.02346 0.99793 0.90235 0.92165 0.85184 0.91363 0.83192 0.85957 0.85998 0.86793 0.88068 0.90170 0.87945 0.85049 0.82954 0.86918 0.85263 0.85753 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.56 113.37 1.20 1.53 16 2 O -0.35 -7.36 7.23 -51.39 -0.37 -7.73 16 3 C 0.51 11.78 7.46 71.24 0.53 12.31 16 4 O -0.53 -14.26 16.01 21.97 0.35 -13.91 16 5 C -0.12 -2.48 2.50 -53.67 -0.13 -2.62 16 6 C -0.07 -1.65 5.45 -19.83 -0.11 -1.76 16 7 C -0.11 -2.74 9.37 22.24 0.21 -2.53 16 8 C -0.13 -4.15 9.42 22.48 0.21 -3.94 16 9 C -0.04 -1.55 5.88 -20.04 -0.12 -1.67 16 10 C -0.04 -1.78 5.87 -20.09 -0.12 -1.90 16 11 C -0.22 -9.71 9.44 22.67 0.21 -9.50 16 12 C -0.11 -5.17 10.01 22.18 0.22 -4.95 16 13 C -0.19 -9.93 8.69 22.76 0.20 -9.73 16 14 C 0.08 4.25 5.56 -21.32 -0.12 4.13 16 15 C -0.50 -27.41 9.05 23.47 0.21 -27.19 16 16 H 0.08 3.95 7.90 -2.91 -0.02 3.93 16 17 C 0.04 1.80 5.14 85.25 0.44 2.24 16 18 N -0.83 -43.80 10.97 21.82 0.24 -43.56 16 19 Si 0.98 38.46 29.59 68.60 2.03 40.49 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 21 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 23 C -0.22 -11.02 9.17 22.95 0.21 -10.81 16 24 C -0.12 -3.81 9.43 22.48 0.21 -3.60 16 25 C -0.11 -2.85 9.06 22.24 0.20 -2.65 16 26 C -0.13 -2.09 9.38 30.61 0.29 -1.80 16 27 C -0.12 -1.80 9.94 30.61 0.30 -1.49 16 28 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 29 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 0.90 8.13 -2.39 -0.02 0.89 16 31 H 0.15 2.89 5.91 -2.91 -0.02 2.87 16 32 H 0.12 4.08 6.20 -2.91 -0.02 4.06 16 33 H 0.12 4.48 6.18 -2.91 -0.02 4.47 16 34 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 35 H 0.10 5.64 6.18 -2.91 -0.02 5.62 16 36 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 37 H 0.10 4.80 6.19 -2.91 -0.02 4.78 16 38 H 0.13 3.86 6.19 -2.91 -0.02 3.85 16 39 H 0.15 3.60 5.27 -2.91 -0.02 3.58 16 40 H 0.11 1.81 7.67 -2.39 -0.02 1.79 16 41 H 0.13 1.65 6.06 -2.39 -0.01 1.63 16 42 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -65.47 357.29 7.35 -58.12 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 1.05 Total: 32.52 kcal Atomic # 6 Polarization: -69.98 SS G_CDS: 4.05 Total: -65.93 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.24 Total: -43.56 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.02 Total: -21.64 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 2.03 Total: 40.49 kcal Total: -65.47 7.35 -58.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241873462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.314 kcal (2) G-P(sol) polarization free energy of solvation -65.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds