Wall clock time and date at job start Tue Mar 31 2020 13:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00275 * 2 1 4 4 O 1.20829 * 119.99707 * 0.27691 * 3 2 1 5 5 C 1.50692 * 120.00595 * 179.97438 * 3 2 1 6 6 C 1.50708 * 115.54761 * 34.41754 * 5 3 2 7 7 C 1.38390 * 119.84658 * 145.30532 * 6 5 3 8 8 C 1.37933 * 120.14840 * 179.76645 * 7 6 5 9 9 C 1.39647 * 119.84502 * 0.51651 * 8 7 6 10 10 C 1.47877 * 120.14934 * 179.76611 * 9 8 7 11 11 C 1.39159 * 120.33389 * 129.69276 * 10 9 8 12 12 C 1.38093 * 119.97974 * 179.77024 * 11 10 9 13 13 C 1.38918 * 120.67666 * 0.51667 * 12 11 10 14 14 C 1.36445 * 120.68340 * 359.74088 * 13 12 11 15 15 C 1.40744 * 119.98704 * 0.02562 * 14 13 12 16 16 C 1.40882 * 120.33203 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99597 * 153.64241 * 16 15 14 18 18 C 1.40071 * 119.99731 * 333.64818 * 16 15 14 19 19 N 1.30766 * 120.00152 * 344.30879 * 18 16 15 20 20 Si 1.86804 * 119.99918 * 164.31679 * 18 16 15 21 21 H 1.48501 * 109.47232 * 59.99173 * 20 18 16 22 22 H 1.48497 * 109.46931 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46593 * 299.99616 * 20 18 16 24 24 C 1.39652 * 119.70373 * 359.73824 * 9 8 7 25 25 C 1.37921 * 119.84863 * 0.02562 * 24 9 8 26 26 C 1.52997 * 117.50482 * 248.75340 * 5 3 2 27 27 C 1.52996 * 117.50478 * 180.08905 * 5 3 2 28 28 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47145 * 299.99641 * 1 2 3 30 30 H 1.08998 * 109.46748 * 59.99491 * 1 2 3 31 31 H 1.08004 * 119.93005 * 0.02595 * 7 6 5 32 32 H 1.07995 * 120.07652 * 180.25705 * 8 7 6 33 33 H 1.08006 * 120.01213 * 0.02562 * 11 10 9 34 34 H 1.08009 * 119.66127 * 180.25948 * 12 11 10 35 35 H 1.08002 * 119.66253 * 179.72230 * 13 12 11 36 36 H 1.07999 * 120.00642 * 179.97438 * 14 13 12 37 37 H 0.97003 * 120.00271 * 180.02562 * 19 18 16 38 38 H 1.07996 * 120.07375 * 179.97438 * 24 9 8 39 39 H 1.08002 * 119.92698 * 180.02562 * 25 24 9 40 40 H 1.09004 * 117.49434 * 359.97438 * 26 5 3 41 41 H 1.09001 * 117.50433 * 145.01584 * 26 5 3 42 42 H 1.09005 * 117.50150 * 214.98522 * 27 5 3 43 43 H 1.08998 * 117.49471 * 359.97438 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0051 5 6 3.5663 1.2749 0.0006 6 6 4.2744 0.1887 -0.7675 7 6 5.4488 0.4751 -1.4413 8 6 6.1046 -0.5155 -2.1422 9 6 5.5751 -1.8071 -2.1797 10 6 6.2699 -2.8730 -2.9334 11 6 6.5376 -4.0990 -2.3318 12 6 7.1826 -5.0908 -3.0439 13 6 7.5798 -4.8761 -4.3577 14 6 7.3359 -3.6827 -4.9726 15 6 6.6761 -2.6538 -4.2749 16 6 6.4210 -1.4186 -4.9026 17 1 5.5910 -0.8089 -4.5773 18 6 7.2438 -0.9814 -5.9484 19 7 8.4079 -1.5442 -6.1436 20 14 6.6784 0.4059 -7.0643 21 1 6.4464 1.6291 -6.2548 22 1 7.7231 0.6782 -8.0838 23 1 5.4160 0.0135 -7.7410 24 6 4.3869 -2.0880 -1.5018 25 6 3.7441 -1.0892 -0.8008 26 6 4.2457 1.8033 1.2655 27 6 4.2008 2.6671 0.0027 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 5.8549 1.4755 -1.4150 32 1 7.0231 -0.2916 -2.6643 33 1 6.2374 -4.2761 -1.3096 34 1 7.3841 -6.0419 -2.5733 35 1 8.0871 -5.6617 -4.8979 36 1 7.6498 -3.5275 -5.9943 37 1 8.9779 -1.2412 -6.8676 38 1 3.9720 -3.0847 -1.5272 39 1 2.8253 -1.3051 -0.2757 40 1 3.6040 2.0942 2.0973 41 1 5.2049 1.3656 1.5421 42 1 5.1306 2.7974 -0.5512 43 1 3.5297 3.5260 0.0032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241873649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:22 Heat of formation + Delta-G solvation = -16.235303 kcal Electronic energy + Delta-G solvation = -26255.235327 eV Core-core repulsion = 22616.745798 eV Total energy + Delta-G solvation = -3638.489530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88435 -38.99524 -37.74815 -36.85780 -35.78493 -33.76787 -31.50761 -30.41854 -29.56415 -28.50591 -27.75076 -25.43934 -24.59541 -22.81313 -22.25581 -21.77927 -20.66322 -20.12679 -19.47220 -17.83037 -17.32500 -16.80607 -16.45787 -15.99368 -15.34854 -14.87491 -14.65051 -14.21118 -14.11450 -13.74733 -13.38300 -13.31839 -13.20914 -12.72652 -12.62115 -12.46387 -12.22015 -12.05311 -11.67485 -11.59548 -11.37522 -11.17011 -11.10538 -10.89763 -10.81728 -10.69526 -10.52315 -10.47438 -10.43409 -10.20036 -9.67218 -9.42940 -9.26335 -8.27878 -8.12160 -7.45394 -7.18529 -6.82114 -4.41936 1.69634 2.09442 2.11531 2.59000 2.75868 2.99983 3.02261 3.06048 3.20129 3.68597 3.86813 4.40310 4.54164 4.58725 4.59901 4.71754 4.95266 4.98772 5.07591 5.34340 5.40852 5.51863 5.59677 5.62803 5.77117 5.80692 5.90204 5.97726 6.17323 6.17994 6.24255 6.35039 6.38527 6.53472 6.70928 6.78611 6.97456 7.08333 7.12955 7.17107 7.26064 7.46684 7.53046 7.63467 7.70674 7.87523 7.99655 8.04867 8.20397 8.54448 8.78869 8.88379 10.07911 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.003968 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.085263 B = 7053.933980 C = 8174.251229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.342 6.342 3 C 0.507 3.493 4 O -0.512 6.512 5 C -0.091 4.091 6 C -0.091 4.091 7 C -0.117 4.117 8 C -0.098 4.098 9 C 0.028 3.972 10 C -0.191 4.191 11 C -0.070 4.070 12 C -0.244 4.244 13 C -0.101 4.101 14 C -0.159 4.159 15 C 0.131 3.869 16 C -0.450 4.450 17 H 0.083 0.917 18 C 0.077 3.923 19 N -0.788 5.788 20 Si 0.904 3.096 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.132 4.132 25 C -0.108 4.108 26 C -0.140 4.140 27 C -0.142 4.142 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.283 0.717 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 4.509 9.683 13.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.258 6.258 3 C 0.351 3.649 4 O -0.400 6.400 5 C -0.092 4.092 6 C -0.091 4.091 7 C -0.135 4.135 8 C -0.116 4.116 9 C 0.028 3.972 10 C -0.192 4.192 11 C -0.088 4.088 12 C -0.263 4.263 13 C -0.120 4.120 14 C -0.178 4.178 15 C 0.128 3.872 16 C -0.479 4.479 17 H 0.101 0.899 18 C -0.141 4.141 19 N -0.413 5.413 20 Si 0.728 3.272 21 H -0.188 1.188 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.150 4.150 25 C -0.125 4.125 26 C -0.177 4.177 27 C -0.179 4.179 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.132 0.868 32 H 0.149 0.851 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.134 0.866 39 H 0.149 0.851 40 H 0.118 0.882 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.852 4.819 9.524 13.251 hybrid contribution -0.386 0.562 -0.681 0.964 sum -8.238 5.382 8.843 13.230 Atomic orbital electron populations 1.23311 0.76871 1.03795 1.02373 1.86612 1.22885 1.32590 1.83758 1.22441 0.89898 0.81270 0.71312 1.90634 1.66707 1.36504 1.46191 1.19613 0.86854 0.97930 1.04772 1.18498 0.96698 0.92516 1.01370 1.20819 0.95313 0.99005 0.98326 1.21384 1.00325 0.92247 0.97637 1.18911 0.92387 0.93246 0.92698 1.18622 1.12141 0.94028 0.94416 1.20563 0.98188 0.92858 0.97222 1.20282 1.10930 0.98802 0.96329 1.20487 0.99692 0.96906 0.94886 1.21068 1.04219 0.92202 1.00356 1.17521 0.88065 0.92470 0.89097 1.19570 1.11785 1.03267 1.13271 0.89901 1.25933 0.93780 0.97678 0.96749 1.69779 1.07037 1.37580 1.26917 0.86417 0.79597 0.81280 0.79898 1.18751 1.20261 1.18740 1.21268 0.95573 0.98845 0.99293 1.21105 0.99932 0.92017 0.99483 1.23199 1.02237 1.01580 0.90645 1.23267 1.02661 0.91782 1.00188 0.87969 0.92083 0.91866 0.86761 0.85131 0.89196 0.89454 0.89513 0.86364 0.90641 0.86635 0.85102 0.88155 0.86891 0.86702 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.34 -4.55 7.23 -39.26 -0.28 -4.83 16 3 C 0.51 7.39 7.46 36.00 0.27 7.66 16 4 O -0.51 -8.20 16.01 -18.75 -0.30 -8.50 16 5 C -0.09 -1.25 2.50 -156.82 -0.39 -1.64 16 6 C -0.09 -1.46 5.45 -104.50 -0.57 -2.03 16 7 C -0.12 -1.97 9.37 -39.64 -0.37 -2.35 16 8 C -0.10 -1.95 8.00 -39.17 -0.31 -2.26 16 9 C 0.03 0.58 4.92 -104.90 -0.52 0.06 16 10 C -0.19 -4.46 5.52 -104.22 -0.58 -5.03 16 11 C -0.07 -1.54 9.52 -39.29 -0.37 -1.92 16 12 C -0.24 -5.35 10.03 -39.38 -0.39 -5.74 16 13 C -0.10 -2.32 9.96 -39.98 -0.40 -2.72 16 14 C -0.16 -4.00 8.62 -39.28 -0.34 -4.34 16 15 C 0.13 3.33 5.56 -106.56 -0.59 2.73 16 16 C -0.45 -11.27 7.13 -37.89 -0.27 -11.54 16 17 H 0.08 2.07 6.61 -52.49 -0.35 1.72 16 18 C 0.08 1.85 5.17 -17.32 -0.09 1.76 16 19 N -0.79 -19.40 10.95 55.55 0.61 -18.80 16 20 Si 0.90 18.22 29.59 -169.99 -5.03 13.19 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.13 -2.44 9.53 -39.17 -0.37 -2.82 16 25 C -0.11 -1.80 9.06 -39.64 -0.36 -2.15 16 26 C -0.14 -1.52 9.94 -26.70 -0.27 -1.78 16 27 C -0.14 -1.65 9.38 -26.70 -0.25 -1.90 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.11 1.65 5.90 -52.48 -0.31 1.34 16 32 H 0.13 2.78 7.31 -52.49 -0.38 2.39 16 33 H 0.09 1.77 8.05 -52.48 -0.42 1.35 16 34 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.12 3.05 6.21 -52.49 -0.33 2.72 16 37 H 0.28 6.37 8.30 -40.82 -0.34 6.04 16 38 H 0.12 2.02 8.05 -52.49 -0.42 1.60 16 39 H 0.13 1.97 5.28 -52.49 -0.28 1.69 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.11 1.23 6.06 -51.93 -0.31 0.91 16 43 H 0.11 1.25 7.67 -51.93 -0.40 0.85 16 LS Contribution 359.03 15.07 5.41 5.41 Total: -1.00 -27.89 359.03 -10.00 -37.89 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.29 Total: 10.29 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: -5.11 Total: -34.64 kcal Atomic # 7 Polarization: -19.40 SS G_CDS: 0.61 Total: -18.80 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.58 Total: -13.33 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.89 -10.00 -37.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241873649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.652 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds