Wall clock time and date at job start Tue Mar 31 2020 13:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00275 * 2 1 4 4 O 1.20829 * 119.99707 * 0.27691 * 3 2 1 5 5 C 1.50692 * 120.00595 * 179.97438 * 3 2 1 6 6 C 1.50708 * 115.54761 * 34.41754 * 5 3 2 7 7 C 1.38390 * 119.84658 * 145.30532 * 6 5 3 8 8 C 1.37933 * 120.14840 * 179.76645 * 7 6 5 9 9 C 1.39647 * 119.84502 * 0.51651 * 8 7 6 10 10 C 1.47877 * 120.14934 * 179.76611 * 9 8 7 11 11 C 1.39159 * 120.33389 * 129.69276 * 10 9 8 12 12 C 1.38093 * 119.97974 * 179.77024 * 11 10 9 13 13 C 1.38918 * 120.67666 * 0.51667 * 12 11 10 14 14 C 1.36445 * 120.68340 * 359.74088 * 13 12 11 15 15 C 1.40744 * 119.98704 * 0.02562 * 14 13 12 16 16 C 1.40882 * 120.33203 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99597 * 153.64241 * 16 15 14 18 18 C 1.40071 * 119.99731 * 333.64818 * 16 15 14 19 19 N 1.30766 * 120.00152 * 344.30879 * 18 16 15 20 20 Si 1.86804 * 119.99918 * 164.31679 * 18 16 15 21 21 H 1.48501 * 109.47232 * 59.99173 * 20 18 16 22 22 H 1.48497 * 109.46931 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.46593 * 299.99616 * 20 18 16 24 24 C 1.39652 * 119.70373 * 359.73824 * 9 8 7 25 25 C 1.37921 * 119.84863 * 0.02562 * 24 9 8 26 26 C 1.52997 * 117.50482 * 248.75340 * 5 3 2 27 27 C 1.52996 * 117.50478 * 180.08905 * 5 3 2 28 28 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47145 * 299.99641 * 1 2 3 30 30 H 1.08998 * 109.46748 * 59.99491 * 1 2 3 31 31 H 1.08004 * 119.93005 * 0.02595 * 7 6 5 32 32 H 1.07995 * 120.07652 * 180.25705 * 8 7 6 33 33 H 1.08006 * 120.01213 * 0.02562 * 11 10 9 34 34 H 1.08009 * 119.66127 * 180.25948 * 12 11 10 35 35 H 1.08002 * 119.66253 * 179.72230 * 13 12 11 36 36 H 1.07999 * 120.00642 * 179.97438 * 14 13 12 37 37 H 0.97003 * 120.00271 * 180.02562 * 19 18 16 38 38 H 1.07996 * 120.07375 * 179.97438 * 24 9 8 39 39 H 1.08002 * 119.92698 * 180.02562 * 25 24 9 40 40 H 1.09004 * 117.49434 * 359.97438 * 26 5 3 41 41 H 1.09001 * 117.50433 * 145.01584 * 26 5 3 42 42 H 1.09005 * 117.50150 * 214.98522 * 27 5 3 43 43 H 1.08998 * 117.49471 * 359.97438 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0051 5 6 3.5663 1.2749 0.0006 6 6 4.2744 0.1887 -0.7675 7 6 5.4488 0.4751 -1.4413 8 6 6.1046 -0.5155 -2.1422 9 6 5.5751 -1.8071 -2.1797 10 6 6.2699 -2.8730 -2.9334 11 6 6.5376 -4.0990 -2.3318 12 6 7.1826 -5.0908 -3.0439 13 6 7.5798 -4.8761 -4.3577 14 6 7.3359 -3.6827 -4.9726 15 6 6.6761 -2.6538 -4.2749 16 6 6.4210 -1.4186 -4.9026 17 1 5.5910 -0.8089 -4.5773 18 6 7.2438 -0.9814 -5.9484 19 7 8.4079 -1.5442 -6.1436 20 14 6.6784 0.4059 -7.0643 21 1 6.4464 1.6291 -6.2548 22 1 7.7231 0.6782 -8.0838 23 1 5.4160 0.0135 -7.7410 24 6 4.3869 -2.0880 -1.5018 25 6 3.7441 -1.0892 -0.8008 26 6 4.2457 1.8033 1.2655 27 6 4.2008 2.6671 0.0027 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 5.8549 1.4755 -1.4150 32 1 7.0231 -0.2916 -2.6643 33 1 6.2374 -4.2761 -1.3096 34 1 7.3841 -6.0419 -2.5733 35 1 8.0871 -5.6617 -4.8979 36 1 7.6498 -3.5275 -5.9943 37 1 8.9779 -1.2412 -6.8676 38 1 3.9720 -3.0847 -1.5272 39 1 2.8253 -1.3051 -0.2757 40 1 3.6040 2.0942 2.0973 41 1 5.2049 1.3656 1.5421 42 1 5.1306 2.7974 -0.5512 43 1 3.5297 3.5260 0.0032 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241873649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:22 Heat of formation + Delta-G solvation = -26.356959 kcal Electronic energy + Delta-G solvation = -26255.674235 eV Core-core repulsion = 22616.745798 eV Total energy + Delta-G solvation = -3638.928438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.95769 -40.39570 -39.19727 -38.07465 -36.95732 -35.56529 -33.04781 -31.89379 -31.28779 -29.82554 -28.87865 -27.19095 -25.74493 -23.87774 -23.65383 -23.15972 -22.31120 -21.53892 -20.78355 -19.22114 -18.87265 -17.87360 -17.62424 -17.35876 -16.91845 -16.22576 -15.93922 -15.72847 -15.52706 -15.05010 -14.84108 -14.68702 -14.38054 -14.32139 -13.99602 -13.70176 -13.60611 -13.37818 -13.14474 -12.98076 -12.80207 -12.64886 -12.50991 -12.35325 -12.15241 -11.92440 -11.81790 -11.74712 -11.56391 -11.45117 -11.37073 -11.14629 -11.05424 -9.73421 -9.64409 -9.27996 -8.86224 -8.57735 -6.28176 0.28031 0.68894 0.96341 1.03945 1.25642 1.36611 1.45946 1.53073 1.65002 2.18762 2.66116 2.76489 3.07789 3.45334 3.62265 3.70595 3.77461 3.95623 4.19516 4.26224 4.30126 4.32790 4.39950 4.49163 4.55396 4.63374 4.67073 4.70717 4.76448 4.87442 4.88895 4.97499 5.13069 5.16084 5.20527 5.28747 5.32425 5.39193 5.47622 5.60316 5.73878 5.76180 5.90471 6.06623 6.18246 6.19938 6.29658 6.40696 6.63961 6.71137 6.95353 7.05760 8.32056 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.003968 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.085263 B = 7053.933980 C = 8174.251229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.352 6.352 3 C 0.506 3.494 4 O -0.532 6.532 5 C -0.117 4.117 6 C -0.076 4.076 7 C -0.114 4.114 8 C -0.111 4.111 9 C -0.004 4.004 10 C -0.195 4.195 11 C -0.079 4.079 12 C -0.242 4.242 13 C -0.108 4.108 14 C -0.188 4.188 15 C 0.100 3.900 16 C -0.472 4.472 17 H 0.074 0.926 18 C 0.042 3.958 19 N -0.820 5.820 20 Si 0.966 3.034 21 H -0.259 1.259 22 H -0.266 1.266 23 H -0.265 1.265 24 C -0.132 4.132 25 C -0.106 4.106 26 C -0.117 4.117 27 C -0.137 4.137 28 H 0.130 0.870 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.140 0.860 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.288 0.712 38 H 0.123 0.877 39 H 0.151 0.849 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 5.312 11.532 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.268 6.268 3 C 0.351 3.649 4 O -0.422 6.422 5 C -0.119 4.119 6 C -0.076 4.076 7 C -0.132 4.132 8 C -0.129 4.129 9 C -0.004 4.004 10 C -0.196 4.196 11 C -0.097 4.097 12 C -0.261 4.261 13 C -0.127 4.127 14 C -0.207 4.207 15 C 0.097 3.903 16 C -0.501 4.501 17 H 0.092 0.908 18 C -0.174 4.174 19 N -0.446 5.446 20 Si 0.788 3.212 21 H -0.183 1.183 22 H -0.191 1.191 23 H -0.190 1.190 24 C -0.150 4.150 25 C -0.123 4.123 26 C -0.153 4.153 27 C -0.173 4.173 28 H 0.148 0.852 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.157 0.843 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.168 0.832 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.064 5.603 11.383 15.593 hybrid contribution -0.103 0.271 -1.090 1.128 sum -9.167 5.874 10.294 14.983 Atomic orbital electron populations 1.23607 0.74964 1.05792 1.02593 1.86553 1.24796 1.32074 1.83372 1.22548 0.90150 0.81328 0.70831 1.90624 1.67136 1.37102 1.47365 1.19663 0.86577 0.98428 1.07193 1.18728 0.95850 0.93046 0.99955 1.21012 0.95399 0.99374 0.97385 1.21243 1.00133 0.92892 0.98678 1.18923 0.93888 0.93194 0.94436 1.19008 1.11288 0.95304 0.94003 1.20904 0.97932 0.92478 0.98391 1.20662 1.09656 0.99987 0.95841 1.20759 0.99554 0.96682 0.95685 1.21061 1.06072 0.93501 1.00061 1.17869 0.89128 0.92937 0.90327 1.19603 1.12211 1.03592 1.14735 0.90800 1.26614 0.93509 0.99762 0.97515 1.69831 1.07909 1.39118 1.27694 0.85480 0.79098 0.78476 0.78188 1.18331 1.19059 1.18952 1.21348 0.94840 0.99819 0.98994 1.21339 1.00285 0.91810 0.98905 1.23339 1.02323 0.99576 0.90087 1.23372 1.02630 0.90634 1.00674 0.85166 0.91231 0.92328 0.84271 0.87633 0.86733 0.86425 0.87420 0.88077 0.90124 0.85912 0.83199 0.86542 0.85789 0.85830 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -8.52 7.23 -51.41 -0.37 -8.89 16 3 C 0.51 13.63 7.46 71.23 0.53 14.16 16 4 O -0.53 -16.02 16.01 21.95 0.35 -15.67 16 5 C -0.12 -2.92 2.50 -53.68 -0.13 -3.06 16 6 C -0.08 -2.28 5.45 -19.79 -0.11 -2.39 16 7 C -0.11 -3.73 9.37 22.23 0.21 -3.52 16 8 C -0.11 -4.51 8.00 22.54 0.18 -4.33 16 9 C 0.00 -0.19 4.92 -20.04 -0.10 -0.29 16 10 C -0.19 -9.31 5.52 -19.61 -0.11 -9.42 16 11 C -0.08 -3.45 9.52 22.46 0.21 -3.23 16 12 C -0.24 -10.40 10.03 22.40 0.22 -10.18 16 13 C -0.11 -5.02 9.96 22.01 0.22 -4.80 16 14 C -0.19 -9.81 8.62 22.46 0.19 -9.61 16 15 C 0.10 5.28 5.56 -21.12 -0.12 5.16 16 16 C -0.47 -24.75 7.13 23.36 0.17 -24.58 16 17 H 0.07 3.87 6.61 -2.91 -0.02 3.85 16 18 C 0.04 2.06 5.17 85.30 0.44 2.50 16 19 N -0.82 -42.01 10.95 21.85 0.24 -41.77 16 20 Si 0.97 38.18 29.59 68.60 2.03 40.21 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 22 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 C -0.13 -4.80 9.53 22.54 0.21 -4.58 16 25 C -0.11 -3.34 9.06 22.23 0.20 -3.14 16 26 C -0.12 -2.12 9.94 30.62 0.30 -1.82 16 27 C -0.14 -2.76 9.38 30.62 0.29 -2.47 16 28 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.14 3.75 5.90 -2.91 -0.02 3.73 16 32 H 0.11 4.74 7.31 -2.91 -0.02 4.72 16 33 H 0.11 4.34 8.05 -2.91 -0.02 4.31 16 34 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.10 5.52 6.21 -2.91 -0.02 5.50 16 37 H 0.29 13.44 8.30 -92.71 -0.77 12.67 16 38 H 0.12 4.18 8.05 -2.91 -0.02 4.15 16 39 H 0.15 4.14 5.28 -2.91 -0.02 4.12 16 40 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.12 2.26 6.06 -2.38 -0.01 2.24 16 43 H 0.11 2.26 7.67 -2.39 -0.02 2.24 16 Total: -1.00 -62.17 359.03 7.30 -54.87 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: 1.04 Total: 35.25 kcal Atomic # 6 Polarization: -68.02 SS G_CDS: 4.02 Total: -64.00 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.24 Total: -41.77 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.02 Total: -24.56 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -62.17 7.30 -54.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241873649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.511 kcal (2) G-P(sol) polarization free energy of solvation -62.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds