Wall clock time and date at job start Tue Mar 31 2020 13:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39626 * 120.07752 * 207.60285 * 3 2 1 5 5 C 1.38042 * 120.09846 * 179.76773 * 4 3 2 6 6 C 1.38133 * 120.27304 * 0.51097 * 5 4 3 7 7 C 1.39428 * 120.16765 * 359.74363 * 6 5 4 8 8 C 1.48372 * 120.05640 * 180.02562 * 7 6 5 9 9 C 1.39393 * 120.04738 * 236.90693 * 8 7 6 10 10 C 1.38289 * 119.88056 * 179.74773 * 9 8 7 11 11 O 1.35997 * 120.01682 * 180.30091 * 10 9 8 12 12 C 1.42901 * 116.99544 * 0.22302 * 11 10 9 13 13 C 1.39288 * 119.97239 * 0.52383 * 10 9 8 14 14 O 1.35963 * 119.95535 * 179.77010 * 13 10 9 15 15 C 1.42895 * 117.00141 * 179.97438 * 14 13 10 16 16 C 1.38628 * 120.09684 * 359.74937 * 13 10 9 17 17 C 1.38047 * 120.11859 * 359.97364 * 16 13 10 18 18 C 1.50701 * 119.98746 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.46666 * 258.79676 * 18 17 16 20 20 H 1.07995 * 120.00527 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99620 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00143 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00017 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46975 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47197 * 120.00424 * 23 21 19 26 26 H 1.48497 * 109.47234 * 240.00647 * 23 21 19 27 27 C 1.39130 * 119.88739 * 359.97438 * 7 6 5 28 28 H 4.52026 * 14.03903 * 359.97438 * 4 2 1 29 29 H 1.07995 * 119.95005 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.86005 * 180.23340 * 5 4 3 31 31 H 1.08007 * 119.91785 * 179.72178 * 6 5 4 32 32 H 1.08005 * 120.05500 * 0.02562 * 9 8 7 33 33 H 1.09003 * 109.47119 * 60.00716 * 12 11 10 34 34 H 1.09006 * 109.46564 * 180.02562 * 12 11 10 35 35 H 1.08996 * 109.47434 * 299.99976 * 12 11 10 36 36 H 1.09001 * 109.47281 * 179.97438 * 15 14 13 37 37 H 1.08997 * 109.47282 * 300.00024 * 15 14 13 38 38 H 1.09004 * 109.47538 * 59.99837 * 15 14 13 39 39 H 1.07998 * 119.94273 * 180.02562 * 16 13 10 40 40 H 1.08994 * 109.46859 * 18.79799 * 18 17 16 41 41 H 1.08998 * 109.47385 * 138.80106 * 18 17 16 42 42 H 0.97001 * 120.00209 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.13214 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3054 1.0717 0.5598 5 6 4.6858 1.0705 0.5644 6 6 5.3831 0.0166 0.0066 7 6 4.6962 -1.0563 -0.5602 8 6 5.4477 -2.1873 -1.1581 9 6 5.2329 -2.5421 -2.4889 10 6 5.9390 -3.5935 -3.0441 11 8 5.7362 -3.9381 -4.3440 12 6 4.7824 -3.1677 -5.0781 13 6 6.8547 -4.3025 -2.2702 14 8 7.5453 -5.3392 -2.8152 15 6 8.4687 -6.0220 -1.9648 16 6 7.0633 -3.9524 -0.9452 17 6 6.3648 -2.8998 -0.3886 18 6 6.5943 -2.5214 1.0520 19 6 5.4753 -3.0695 1.8996 20 1 4.6780 -3.6356 1.4412 21 6 5.4700 -2.8492 3.2607 22 7 6.4412 -2.1603 3.8191 23 14 4.0834 -3.5291 4.3116 24 1 3.1225 -4.2624 3.4490 25 1 4.6418 -4.4558 5.3288 26 1 3.3838 -2.4101 4.9925 27 6 3.3049 -1.0649 -0.5633 28 1 -1.0499 -0.0006 -0.0009 29 1 2.7655 1.9003 0.9937 30 1 5.2228 1.8992 1.0018 31 1 6.4631 0.0237 0.0093 32 1 4.5196 -1.9939 -3.0865 33 1 5.0960 -2.1239 -5.0973 34 1 4.7170 -3.5466 -6.0980 35 1 3.8065 -3.2451 -4.5988 36 1 8.9506 -6.8251 -2.5223 37 1 9.2242 -5.3204 -1.6113 38 1 7.9352 -6.4416 -1.1119 39 1 7.7742 -4.5036 -0.3475 40 1 7.5434 -2.9372 1.3900 41 1 6.6204 -1.4355 1.1427 42 1 6.4373 -2.0049 4.7765 43 1 2.7689 -1.8937 -1.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241919200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:30 Heat of formation + Delta-G solvation = 26.129781 kcal Electronic energy + Delta-G solvation = -26515.878800 eV Core-core repulsion = 22879.226358 eV Total energy + Delta-G solvation = -3636.652442 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27206 -38.87471 -38.11319 -36.71049 -33.55918 -33.16190 -31.59112 -30.91632 -29.81994 -28.69130 -27.78834 -27.01444 -25.98614 -23.56321 -22.78262 -22.38214 -21.00363 -20.39651 -18.59754 -17.69683 -16.60099 -16.42279 -16.32933 -15.85915 -15.72850 -15.03987 -14.99029 -14.64283 -14.59375 -14.15431 -14.02072 -13.37951 -13.19850 -13.14182 -12.60019 -12.51680 -12.15774 -12.03669 -11.90550 -11.34622 -11.34076 -11.17909 -11.06069 -10.92813 -10.86344 -10.82726 -10.54685 -10.46581 -10.25074 -10.11157 -9.58352 -9.33315 -8.48468 -8.42572 -8.12329 -7.98186 -7.09115 -6.04486 -4.06239 1.30575 1.58252 1.91296 2.10942 2.94117 3.28839 3.33892 3.37100 3.42316 3.56979 3.59447 4.16997 4.37203 4.46211 4.55731 5.02538 5.21473 5.24680 5.28773 5.31478 5.34194 5.36509 5.42181 5.48246 5.57160 5.64452 5.67613 5.72531 5.83742 5.86319 5.91754 5.98791 6.15770 6.30091 6.46057 6.58314 6.80343 6.83937 6.89366 6.91509 7.09675 7.20540 7.36517 7.38317 7.50893 7.72425 7.74442 7.91117 7.95108 8.30323 8.96909 9.56953 11.05097 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.008692 B = 0.005643 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.710881 B = 4960.866890 C = 7016.792438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.126 4.126 3 C -0.007 4.007 4 C -0.100 4.100 5 C -0.116 4.116 6 C -0.072 4.072 7 C -0.007 4.007 8 C -0.059 4.059 9 C -0.155 4.155 10 C 0.068 3.932 11 O -0.313 6.313 12 C 0.029 3.971 13 C 0.102 3.898 14 O -0.313 6.313 15 C 0.027 3.973 16 C -0.177 4.177 17 C -0.012 4.012 18 C 0.044 3.956 19 C -0.500 4.500 20 H 0.055 0.945 21 C 0.063 3.937 22 N -0.892 5.892 23 Si 0.886 3.114 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.283 1.283 27 C -0.078 4.078 28 H 0.220 0.780 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.134 0.866 40 H 0.026 0.974 41 H 0.044 0.956 42 H 0.260 0.740 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.593 2.177 -12.422 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.126 4.126 3 C -0.007 4.007 4 C -0.118 4.118 5 C -0.134 4.134 6 C -0.090 4.090 7 C -0.007 4.007 8 C -0.060 4.060 9 C -0.174 4.174 10 C 0.024 3.976 11 O -0.227 6.227 12 C -0.066 4.066 13 C 0.057 3.943 14 O -0.227 6.227 15 C -0.068 4.068 16 C -0.196 4.196 17 C -0.012 4.012 18 C 0.008 3.992 19 C -0.538 4.538 20 H 0.073 0.927 21 C -0.138 4.138 22 N -0.532 5.532 23 Si 0.714 3.286 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.096 4.096 28 H 0.237 0.763 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.152 0.848 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.441 2.004 -12.557 12.948 hybrid contribution -1.068 -0.321 1.160 1.609 sum -3.509 1.683 -11.397 12.043 Atomic orbital electron populations 1.24718 0.95636 1.00748 1.01281 1.20211 0.92128 1.00164 1.00081 1.15768 0.86136 0.96239 1.02553 1.21044 0.94229 0.97362 0.99141 1.20884 0.93604 0.99005 0.99951 1.21268 1.00112 0.92413 0.95246 1.18362 0.91950 0.92965 0.97434 1.18269 0.98572 0.96890 0.92233 1.20953 1.02201 0.98307 0.95940 1.17875 0.98752 0.96894 0.84076 1.86111 1.59589 1.56517 1.20486 1.22952 0.91732 0.95921 0.96032 1.18316 0.94346 0.90142 0.91531 1.86080 1.53578 1.43554 1.39471 1.23009 0.91927 0.96435 0.95439 1.20985 1.04747 1.01267 0.92614 1.20492 0.91104 0.91740 0.97854 1.18517 0.97763 0.98346 0.84612 1.20964 1.07495 1.33813 0.91567 0.92671 1.24899 0.95802 0.95206 0.97881 1.69942 1.31974 1.40087 1.11152 0.86610 0.82564 0.78916 0.80521 1.19691 1.21000 1.20923 1.21083 0.93095 0.96700 0.98737 0.76278 0.86355 0.85800 0.85538 0.85358 0.93065 0.88852 0.93081 0.88818 0.92758 0.92573 0.84801 0.95563 0.93851 0.93004 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.78 19.25 29.55 0.57 -2.21 16 2 C -0.13 -2.05 13.23 -38.83 -0.51 -2.57 16 3 C -0.01 -0.12 5.72 -107.05 -0.61 -0.73 16 4 C -0.10 -1.64 9.74 -39.14 -0.38 -2.02 16 5 C -0.12 -1.93 10.02 -39.69 -0.40 -2.33 16 6 C -0.07 -1.32 7.84 -39.18 -0.31 -1.63 16 7 C -0.01 -0.13 4.64 -104.95 -0.49 -0.62 16 8 C -0.06 -1.15 5.38 -104.89 -0.56 -1.71 16 9 C -0.16 -2.66 8.61 -39.13 -0.34 -3.00 16 10 C 0.07 1.22 6.69 -39.17 -0.26 0.95 16 11 O -0.31 -5.09 10.28 -34.37 -0.35 -5.44 16 12 C 0.03 0.33 9.81 101.05 0.99 1.32 16 13 C 0.10 1.87 6.70 -39.05 -0.26 1.61 16 14 O -0.31 -5.32 10.27 -34.26 -0.35 -5.67 16 15 C 0.03 0.35 9.81 101.05 0.99 1.34 16 16 C -0.18 -3.41 8.64 -39.51 -0.34 -3.76 16 17 C -0.01 -0.24 5.08 -104.29 -0.53 -0.77 16 18 C 0.04 1.08 4.57 -29.03 -0.13 0.94 16 19 C -0.50 -13.57 8.79 -34.44 -0.30 -13.87 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 23 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C -0.08 -1.43 9.33 -38.85 -0.36 -1.79 16 28 H 0.22 1.96 7.80 -54.09 -0.42 1.53 16 29 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.13 2.24 7.10 -52.48 -0.37 1.87 16 32 H 0.13 1.87 6.29 -52.48 -0.33 1.54 16 33 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 36 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 38 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 39 H 0.13 2.41 6.24 -52.49 -0.33 2.08 16 40 H 0.03 0.67 7.99 -51.93 -0.41 0.26 16 41 H 0.04 1.08 4.94 -51.93 -0.26 0.83 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -32.03 371.51 -8.10 -40.13 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.37 Total: 2.71 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -3.34 Total: -29.19 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.74 Total: -24.84 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.71 Total: -11.12 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.03 -8.10 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241919200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.256 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds