Wall clock time and date at job start Tue Mar 31 2020 13:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39626 * 120.07752 * 207.60285 * 3 2 1 5 5 C 1.38042 * 120.09846 * 179.76773 * 4 3 2 6 6 C 1.38133 * 120.27304 * 0.51097 * 5 4 3 7 7 C 1.39428 * 120.16765 * 359.74363 * 6 5 4 8 8 C 1.48372 * 120.05640 * 180.02562 * 7 6 5 9 9 C 1.39393 * 120.04738 * 236.90693 * 8 7 6 10 10 C 1.38289 * 119.88056 * 179.74773 * 9 8 7 11 11 O 1.35997 * 120.01682 * 180.30091 * 10 9 8 12 12 C 1.42901 * 116.99544 * 0.22302 * 11 10 9 13 13 C 1.39288 * 119.97239 * 0.52383 * 10 9 8 14 14 O 1.35963 * 119.95535 * 179.77010 * 13 10 9 15 15 C 1.42895 * 117.00141 * 179.97438 * 14 13 10 16 16 C 1.38628 * 120.09684 * 359.74937 * 13 10 9 17 17 C 1.38047 * 120.11859 * 359.97364 * 16 13 10 18 18 C 1.50701 * 119.98746 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.46666 * 258.79676 * 18 17 16 20 20 H 1.07995 * 120.00527 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99620 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00143 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00017 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46975 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47197 * 120.00424 * 23 21 19 26 26 H 1.48497 * 109.47234 * 240.00647 * 23 21 19 27 27 C 1.39130 * 119.88739 * 359.97438 * 7 6 5 28 28 H 4.52026 * 14.03903 * 359.97438 * 4 2 1 29 29 H 1.07995 * 119.95005 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.86005 * 180.23340 * 5 4 3 31 31 H 1.08007 * 119.91785 * 179.72178 * 6 5 4 32 32 H 1.08005 * 120.05500 * 0.02562 * 9 8 7 33 33 H 1.09003 * 109.47119 * 60.00716 * 12 11 10 34 34 H 1.09006 * 109.46564 * 180.02562 * 12 11 10 35 35 H 1.08996 * 109.47434 * 299.99976 * 12 11 10 36 36 H 1.09001 * 109.47281 * 179.97438 * 15 14 13 37 37 H 1.08997 * 109.47282 * 300.00024 * 15 14 13 38 38 H 1.09004 * 109.47538 * 59.99837 * 15 14 13 39 39 H 1.07998 * 119.94273 * 180.02562 * 16 13 10 40 40 H 1.08994 * 109.46859 * 18.79799 * 18 17 16 41 41 H 1.08998 * 109.47385 * 138.80106 * 18 17 16 42 42 H 0.97001 * 120.00209 * 179.97438 * 22 21 19 43 43 H 1.08000 * 120.13214 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3054 1.0717 0.5598 5 6 4.6858 1.0705 0.5644 6 6 5.3831 0.0166 0.0066 7 6 4.6962 -1.0563 -0.5602 8 6 5.4477 -2.1873 -1.1581 9 6 5.2329 -2.5421 -2.4889 10 6 5.9390 -3.5935 -3.0441 11 8 5.7362 -3.9381 -4.3440 12 6 4.7824 -3.1677 -5.0781 13 6 6.8547 -4.3025 -2.2702 14 8 7.5453 -5.3392 -2.8152 15 6 8.4687 -6.0220 -1.9648 16 6 7.0633 -3.9524 -0.9452 17 6 6.3648 -2.8998 -0.3886 18 6 6.5943 -2.5214 1.0520 19 6 5.4753 -3.0695 1.8996 20 1 4.6780 -3.6356 1.4412 21 6 5.4700 -2.8492 3.2607 22 7 6.4412 -2.1603 3.8191 23 14 4.0834 -3.5291 4.3116 24 1 3.1225 -4.2624 3.4490 25 1 4.6418 -4.4558 5.3288 26 1 3.3838 -2.4101 4.9925 27 6 3.3049 -1.0649 -0.5633 28 1 -1.0499 -0.0006 -0.0009 29 1 2.7655 1.9003 0.9937 30 1 5.2228 1.8992 1.0018 31 1 6.4631 0.0237 0.0093 32 1 4.5196 -1.9939 -3.0865 33 1 5.0960 -2.1239 -5.0973 34 1 4.7170 -3.5466 -6.0980 35 1 3.8065 -3.2451 -4.5988 36 1 8.9506 -6.8251 -2.5223 37 1 9.2242 -5.3204 -1.6113 38 1 7.9352 -6.4416 -1.1119 39 1 7.7742 -4.5036 -0.3475 40 1 7.5434 -2.9372 1.3900 41 1 6.6204 -1.4355 1.1427 42 1 6.4373 -2.0049 4.7765 43 1 2.7689 -1.8937 -1.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241919200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:29 Heat of formation + Delta-G solvation = 10.520556 kcal Electronic energy + Delta-G solvation = -26516.555667 eV Core-core repulsion = 22879.226358 eV Total energy + Delta-G solvation = -3637.329308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63763 -40.19131 -39.34986 -38.10887 -35.16915 -34.73403 -32.93189 -32.60018 -31.09558 -29.95417 -29.35362 -28.03840 -27.48230 -25.28015 -24.13032 -23.80472 -22.41016 -21.84297 -19.82355 -18.97709 -18.45350 -17.88042 -17.68359 -17.22167 -16.97131 -16.54560 -16.24605 -16.10971 -15.97601 -15.40985 -15.29414 -14.83427 -14.58086 -14.52829 -14.31457 -13.86897 -13.65973 -13.36775 -13.28884 -13.02810 -12.78273 -12.64656 -12.48561 -12.34573 -12.29679 -12.07396 -12.03877 -11.91754 -11.81127 -11.43406 -11.32845 -11.18725 -10.54154 -9.86604 -9.52565 -9.32748 -8.55309 -8.13703 -6.23769 -0.03041 0.22072 0.45229 0.71233 1.33616 1.36407 1.46944 1.81569 2.11374 2.36360 2.39310 2.40635 2.76175 3.08457 3.16708 3.43075 3.69219 3.91345 4.05307 4.10799 4.20010 4.27132 4.36801 4.40330 4.40625 4.43569 4.45940 4.53010 4.64759 4.71772 4.73278 4.75240 4.78749 4.95756 5.18100 5.21776 5.25502 5.35760 5.43730 5.49619 5.54272 5.65084 5.75314 5.79510 5.97689 6.07266 6.13708 6.24158 6.61508 6.64641 6.84794 7.41877 8.92988 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.008692 B = 0.005643 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.710881 B = 4960.866890 C = 7016.792438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.193 4.193 3 C -0.010 4.010 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.095 4.095 7 C -0.021 4.021 8 C -0.063 4.063 9 C -0.149 4.149 10 C 0.073 3.927 11 O -0.326 6.326 12 C 0.018 3.982 13 C 0.095 3.905 14 O -0.323 6.323 15 C 0.019 3.981 16 C -0.181 4.181 17 C -0.041 4.041 18 C 0.056 3.944 19 C -0.505 4.505 20 H 0.042 0.958 21 C 0.018 3.982 22 N -0.921 5.921 23 Si 0.940 3.060 24 H -0.272 1.272 25 H -0.275 1.275 26 H -0.280 1.280 27 C -0.095 4.095 28 H 0.265 0.735 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.120 0.880 32 H 0.154 0.846 33 H 0.062 0.938 34 H 0.123 0.877 35 H 0.059 0.941 36 H 0.127 0.873 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.138 0.862 40 H 0.002 0.998 41 H 0.034 0.966 42 H 0.263 0.737 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 2.244 -13.527 14.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.193 4.193 3 C -0.010 4.010 4 C -0.124 4.124 5 C -0.135 4.135 6 C -0.113 4.113 7 C -0.021 4.021 8 C -0.064 4.064 9 C -0.168 4.168 10 C 0.028 3.972 11 O -0.241 6.241 12 C -0.077 4.077 13 C 0.049 3.951 14 O -0.237 6.237 15 C -0.075 4.075 16 C -0.200 4.200 17 C -0.042 4.042 18 C 0.020 3.980 19 C -0.543 4.543 20 H 0.060 0.940 21 C -0.180 4.180 22 N -0.562 5.562 23 Si 0.766 3.234 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.205 1.205 27 C -0.113 4.113 28 H 0.281 0.719 29 H 0.160 0.840 30 H 0.165 0.835 31 H 0.138 0.862 32 H 0.172 0.828 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.155 0.845 40 H 0.020 0.980 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.583 2.064 -13.676 14.571 hybrid contribution -0.486 -0.349 1.374 1.499 sum -5.069 1.715 -12.302 13.415 Atomic orbital electron populations 1.25754 0.96356 0.97444 0.97656 1.20430 0.92571 1.03197 1.03130 1.16014 0.87471 0.95946 1.01586 1.21370 0.94233 0.97904 0.98853 1.21195 0.94065 0.99080 0.99130 1.21362 1.00044 0.93343 0.96511 1.18475 0.92431 0.93121 0.98119 1.18389 0.98116 0.96837 0.93043 1.21128 1.02298 0.98165 0.95168 1.18040 0.97960 0.96315 0.84905 1.86102 1.60807 1.57540 1.19601 1.23326 0.91048 0.96374 0.96905 1.18396 0.94773 0.90704 0.91190 1.86067 1.54052 1.43135 1.40470 1.23306 0.91391 0.97103 0.95717 1.20977 1.04719 1.00897 0.93365 1.20238 0.93597 0.93777 0.96554 1.18232 0.95677 0.97381 0.86740 1.21141 1.07708 1.33286 0.92143 0.93995 1.25570 0.97810 0.95620 0.99011 1.70032 1.33431 1.41242 1.11471 0.85766 0.80094 0.78451 0.79092 1.19707 1.20088 1.20539 1.21177 0.92884 0.97451 0.99808 0.71938 0.83955 0.83466 0.86177 0.82809 0.91955 0.85920 0.92281 0.85501 0.92226 0.92794 0.84466 0.97981 0.94834 0.92831 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 19.25 74.32 1.43 -2.21 16 2 C -0.19 -5.99 13.23 30.01 0.40 -5.59 16 3 C -0.01 -0.36 5.72 -21.44 -0.12 -0.48 16 4 C -0.11 -3.43 9.74 22.56 0.22 -3.21 16 5 C -0.12 -3.90 10.02 22.20 0.22 -3.67 16 6 C -0.09 -3.59 7.84 22.53 0.18 -3.41 16 7 C -0.02 -0.84 4.64 -20.08 -0.09 -0.93 16 8 C -0.06 -2.53 5.38 -20.04 -0.11 -2.63 16 9 C -0.15 -5.07 8.61 22.56 0.19 -4.88 16 10 C 0.07 2.55 6.69 22.53 0.15 2.70 16 11 O -0.33 -10.10 10.28 -79.52 -0.82 -10.91 16 12 C 0.02 0.36 9.81 113.37 1.11 1.47 16 13 C 0.09 3.50 6.70 22.62 0.15 3.66 16 14 O -0.32 -10.80 10.27 -79.14 -0.81 -11.61 16 15 C 0.02 0.48 9.81 113.37 1.11 1.59 16 16 C -0.18 -7.19 8.64 22.32 0.19 -7.00 16 17 C -0.04 -1.82 5.08 -19.65 -0.10 -1.92 16 18 C 0.06 2.89 4.57 29.10 0.13 3.02 16 19 C -0.50 -28.29 8.79 25.60 0.23 -28.07 16 20 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 21 C 0.02 1.04 5.46 84.66 0.46 1.50 16 22 N -0.92 -54.02 13.29 21.45 0.28 -53.74 16 23 Si 0.94 44.96 29.54 68.60 2.03 46.99 16 24 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 27 C -0.10 -3.54 9.33 22.74 0.21 -3.33 16 28 H 0.26 3.27 7.80 -4.42 -0.03 3.24 16 29 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.12 4.56 7.10 -2.91 -0.02 4.54 16 32 H 0.15 4.30 6.29 -2.91 -0.02 4.29 16 33 H 0.06 1.14 7.67 -2.39 -0.02 1.13 16 34 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.06 1.12 7.65 -2.39 -0.02 1.10 16 36 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 1.41 7.66 -2.39 -0.02 1.39 16 38 H 0.05 1.35 7.66 -2.39 -0.02 1.34 16 39 H 0.14 5.16 6.24 -2.91 -0.02 5.14 16 40 H 0.00 0.10 7.99 -2.39 -0.02 0.08 16 41 H 0.03 1.77 4.94 -2.39 -0.01 1.76 16 42 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -70.75 371.51 7.67 -63.08 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.02 Total: 19.59 kcal Atomic # 6 Polarization: -59.37 SS G_CDS: 5.97 Total: -53.40 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.28 Total: -53.74 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -1.63 Total: -22.53 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -70.75 7.67 -63.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241919200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.598 kcal (2) G-P(sol) polarization free energy of solvation -70.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds