Wall clock time and date at job start Tue Mar 31 2020 13:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39664 * 120.01863 * 107.34517 * 3 2 1 5 5 C 1.37686 * 119.98176 * 180.25089 * 4 3 2 6 6 C 1.39504 * 120.01784 * 0.04092 * 5 4 3 7 7 C 1.48260 * 119.98042 * 179.97438 * 6 5 4 8 8 C 1.39448 * 120.05632 * 236.90121 * 7 6 5 9 9 C 1.38271 * 119.87710 * 179.70023 * 8 7 6 10 10 O 1.35994 * 120.01676 * 180.29523 * 9 8 7 11 11 C 1.42898 * 116.99986 * 0.32677 * 10 9 8 12 12 C 1.39306 * 119.97332 * 0.61873 * 9 8 7 13 13 O 1.35967 * 119.94580 * 179.67769 * 12 9 8 14 14 C 1.42906 * 116.99951 * 179.97438 * 13 12 9 15 15 C 1.38641 * 120.11042 * 359.65290 * 12 9 8 16 16 C 1.38030 * 120.12272 * 0.02797 * 15 12 9 17 17 C 1.50699 * 119.98610 * 179.97438 * 16 15 12 18 18 C 1.50697 * 109.47178 * 258.79794 * 17 16 15 19 19 H 1.08004 * 119.99864 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00113 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00295 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00203 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46837 * 90.00145 * 22 20 18 24 24 H 1.48500 * 109.47339 * 210.00226 * 22 20 18 25 25 H 1.48493 * 109.46920 * 330.00245 * 22 20 18 26 26 C 1.39491 * 120.03937 * 359.95571 * 6 5 4 27 27 C 1.37691 * 120.01782 * 0.02562 * 26 6 5 28 28 H 4.51953 * 14.05727 * 0.02562 * 4 2 1 29 29 H 1.07999 * 120.00983 * 0.26739 * 4 3 2 30 30 H 1.07994 * 119.99301 * 180.02562 * 5 4 3 31 31 H 1.08007 * 120.06271 * 359.97438 * 8 7 6 32 32 H 1.08999 * 109.47332 * 59.99309 * 11 10 9 33 33 H 1.08994 * 109.47385 * 179.97438 * 11 10 9 34 34 H 1.09006 * 109.46766 * 300.00147 * 11 10 9 35 35 H 1.08993 * 109.47214 * 179.97438 * 14 13 12 36 36 H 1.08997 * 109.47045 * 300.00197 * 14 13 12 37 37 H 1.09000 * 109.46719 * 60.00062 * 14 13 12 38 38 H 1.07991 * 119.93969 * 180.02562 * 15 12 9 39 39 H 1.08996 * 109.47205 * 18.80065 * 17 16 15 40 40 H 1.08999 * 109.46708 * 138.79720 * 17 16 15 41 41 H 0.96993 * 120.00273 * 179.97438 * 21 20 18 42 42 H 1.08000 * 119.99239 * 180.02562 * 26 6 5 43 43 H 1.08003 * 120.00559 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3046 0.3615 -1.1543 5 6 4.6814 0.3568 -1.1550 6 6 5.3787 -0.0090 -0.0034 7 6 6.8613 -0.0142 -0.0053 8 6 7.5560 -1.1792 0.3184 9 6 8.9387 -1.1816 0.3094 10 8 9.6190 -2.3177 0.6188 11 6 8.8411 -3.4736 0.9362 12 6 9.6346 -0.0179 -0.0100 13 8 10.9943 -0.0192 -0.0123 14 6 11.6437 1.2083 -0.3497 15 6 8.9432 1.1414 -0.3262 16 6 7.5629 1.1469 -0.3251 17 6 6.8144 2.4089 -0.6687 18 6 6.3280 3.0651 0.5978 19 1 6.5393 2.6131 1.5557 20 6 5.6122 4.2417 0.5335 21 7 5.3536 4.7913 -0.6330 22 14 5.0086 5.0547 2.1033 23 1 6.0410 5.9998 2.5998 24 1 3.7519 5.7955 1.8255 25 1 4.7532 4.0152 3.1325 26 6 4.6818 -0.3694 1.1499 27 6 3.3049 -0.3650 1.1525 28 1 -1.0500 0.0004 0.0005 29 1 2.7649 0.6443 -2.0460 30 1 5.2218 0.6362 -2.0474 31 1 7.0150 -2.0791 0.5713 32 1 8.2107 -3.7322 0.0855 33 1 9.5053 -4.3077 1.1626 34 1 8.2139 -3.2627 1.8024 35 1 12.7241 1.0697 -0.3133 36 1 11.3494 1.5107 -1.3547 37 1 11.3526 1.9808 0.3621 38 1 9.4855 2.0419 -0.5739 39 1 7.4776 3.0915 -1.1999 40 1 5.9616 2.1645 -1.3020 41 1 4.8497 5.6189 -0.6782 42 1 5.2224 -0.6521 2.0411 43 1 2.7656 -0.6445 2.0454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242294326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:33 Heat of formation + Delta-G solvation = 26.110290 kcal Electronic energy + Delta-G solvation = -26408.716563 eV Core-core repulsion = 22772.063276 eV Total energy + Delta-G solvation = -3636.653287 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.27583 -38.87093 -38.12082 -36.73413 -33.54930 -33.18843 -31.08142 -30.96870 -30.41303 -28.58090 -27.78624 -27.02189 -26.03522 -23.63309 -22.75179 -22.01916 -21.14514 -20.30181 -18.64592 -17.98442 -16.79083 -16.41046 -16.28007 -15.75719 -15.59955 -15.03494 -14.99656 -14.64019 -14.59775 -14.15754 -13.92318 -13.37490 -13.18206 -13.04369 -12.61009 -12.49919 -12.28133 -12.11927 -11.92579 -11.45218 -11.31147 -11.18009 -11.08149 -10.93505 -10.82896 -10.79111 -10.54807 -10.40969 -10.28065 -10.08588 -9.58194 -9.33985 -8.52267 -8.36474 -8.25217 -7.92198 -7.07543 -6.04119 -4.06177 1.17675 1.82544 1.90095 2.00992 2.95079 3.29618 3.33174 3.36680 3.40876 3.56248 3.58756 4.16485 4.40314 4.47613 4.52867 5.02824 5.20817 5.25085 5.27860 5.31738 5.33391 5.36618 5.37113 5.41713 5.56377 5.63735 5.71840 5.78111 5.83139 5.84513 5.92704 6.02683 6.13813 6.27926 6.46060 6.58926 6.77782 6.86193 6.88369 6.91070 7.10724 7.19550 7.35857 7.38413 7.51038 7.73400 7.74225 7.90981 7.94374 8.30198 8.96600 9.56930 11.05476 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009363 B = 0.005209 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.906354 B = 5374.068279 C = 7534.719243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 C -0.012 4.012 4 C -0.087 4.087 5 C -0.087 4.087 6 C 0.008 3.992 7 C -0.062 4.062 8 C -0.154 4.154 9 C 0.068 3.932 10 O -0.313 6.313 11 C 0.029 3.971 12 C 0.102 3.898 13 O -0.313 6.313 14 C 0.027 3.973 15 C -0.178 4.178 16 C -0.011 4.011 17 C 0.044 3.956 18 C -0.501 4.501 19 H 0.055 0.945 20 C 0.063 3.937 21 N -0.892 5.892 22 Si 0.887 3.113 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.108 4.108 27 C -0.095 4.095 28 H 0.220 0.780 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.134 0.866 39 H 0.026 0.974 40 H 0.044 0.956 41 H 0.261 0.739 42 H 0.122 0.878 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 -12.615 0.117 12.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.126 4.126 3 C -0.012 4.012 4 C -0.105 4.105 5 C -0.105 4.105 6 C 0.008 3.992 7 C -0.063 4.063 8 C -0.173 4.173 9 C 0.024 3.976 10 O -0.227 6.227 11 C -0.066 4.066 12 C 0.057 3.943 13 O -0.227 6.227 14 C -0.068 4.068 15 C -0.196 4.196 16 C -0.011 4.011 17 C 0.007 3.993 18 C -0.540 4.540 19 H 0.073 0.927 20 C -0.138 4.138 21 N -0.531 5.531 22 Si 0.715 3.285 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.126 4.126 27 C -0.113 4.113 28 H 0.237 0.763 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.152 0.848 39 H 0.044 0.956 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.140 0.860 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.116 -12.647 0.088 12.824 hybrid contribution -0.845 0.945 0.932 1.573 sum 1.272 -11.703 1.020 11.816 Atomic orbital electron populations 1.24717 0.95644 1.01547 1.00653 1.20244 0.92164 0.99966 1.00179 1.15926 0.86136 1.04074 0.95043 1.20981 0.93997 0.98578 0.96990 1.21043 0.93300 0.97862 0.98303 1.18615 0.91499 0.95803 0.93246 1.18321 0.91635 0.92851 1.03473 1.20952 0.91437 0.99089 1.05826 1.17875 0.89609 0.85463 1.04693 1.86111 1.34619 1.17356 1.84615 1.22950 0.96919 0.86796 0.99967 1.18333 0.82326 0.92288 1.01359 1.86083 1.16230 1.35090 1.85263 1.23011 0.97396 0.86016 1.00390 1.20985 0.94944 0.96393 1.07322 1.20507 0.92270 0.96027 0.92290 1.18518 0.95214 0.87758 0.97785 1.20914 1.34107 1.06872 0.92063 0.92701 1.24906 0.95947 0.97061 0.95889 1.69931 1.40189 1.19574 1.23421 0.86653 0.78326 0.79621 0.83910 1.20683 1.21173 1.19765 1.20968 0.93355 1.00790 0.97440 1.20920 0.93901 0.99826 0.96670 0.76308 0.86025 0.85353 0.85304 0.93078 0.88864 0.93059 0.88813 0.92757 0.92567 0.84809 0.95590 0.93831 0.92938 0.86017 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.78 19.25 29.55 0.57 -2.21 16 2 C -0.13 -2.03 13.23 -38.84 -0.51 -2.54 16 3 C -0.01 -0.21 5.73 -106.91 -0.61 -0.82 16 4 C -0.09 -1.54 9.73 -39.25 -0.38 -1.93 16 5 C -0.09 -1.62 7.83 -39.31 -0.31 -1.93 16 6 C 0.01 0.16 4.65 -104.84 -0.49 -0.33 16 7 C -0.06 -1.19 5.37 -104.90 -0.56 -1.75 16 8 C -0.15 -2.59 8.61 -39.12 -0.34 -2.92 16 9 C 0.07 1.19 6.69 -39.17 -0.26 0.93 16 10 O -0.31 -5.01 10.28 -34.36 -0.35 -5.36 16 11 C 0.03 0.32 9.81 101.05 0.99 1.32 16 12 C 0.10 1.86 6.70 -39.04 -0.26 1.60 16 13 O -0.31 -5.27 10.27 -34.28 -0.35 -5.62 16 14 C 0.03 0.34 9.81 101.05 0.99 1.34 16 15 C -0.18 -3.39 8.64 -39.51 -0.34 -3.73 16 16 C -0.01 -0.22 5.08 -104.27 -0.53 -0.75 16 17 C 0.04 1.06 4.57 -29.04 -0.13 0.93 16 18 C -0.50 -13.53 8.79 -34.44 -0.30 -13.83 16 19 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 22 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.11 -1.86 9.60 -39.31 -0.38 -2.24 16 27 C -0.10 -1.59 9.73 -39.25 -0.38 -1.97 16 28 H 0.22 1.94 7.80 -54.09 -0.42 1.51 16 29 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 30 H 0.13 2.32 7.10 -52.49 -0.37 1.94 16 31 H 0.13 1.81 6.29 -52.48 -0.33 1.48 16 32 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.64 7.66 -51.93 -0.40 0.25 16 37 H 0.06 0.70 7.66 -51.93 -0.40 0.31 16 38 H 0.13 2.39 6.24 -52.49 -0.33 2.06 16 39 H 0.03 0.67 7.99 -51.93 -0.41 0.25 16 40 H 0.04 1.09 4.94 -51.93 -0.26 0.84 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 43 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -31.93 371.49 -8.10 -40.03 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.37 Total: 2.87 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -3.34 Total: -29.19 kcal Atomic # 7 Polarization: -25.67 SS G_CDS: 0.74 Total: -24.93 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -0.71 Total: -10.98 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.93 -8.10 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242294326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.139 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds