Wall clock time and date at job start Tue Mar 31 2020 13:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39664 * 120.01863 * 107.34517 * 3 2 1 5 5 C 1.37686 * 119.98176 * 180.25089 * 4 3 2 6 6 C 1.39504 * 120.01784 * 0.04092 * 5 4 3 7 7 C 1.48260 * 119.98042 * 179.97438 * 6 5 4 8 8 C 1.39448 * 120.05632 * 236.90121 * 7 6 5 9 9 C 1.38271 * 119.87710 * 179.70023 * 8 7 6 10 10 O 1.35994 * 120.01676 * 180.29523 * 9 8 7 11 11 C 1.42898 * 116.99986 * 0.32677 * 10 9 8 12 12 C 1.39306 * 119.97332 * 0.61873 * 9 8 7 13 13 O 1.35967 * 119.94580 * 179.67769 * 12 9 8 14 14 C 1.42906 * 116.99951 * 179.97438 * 13 12 9 15 15 C 1.38641 * 120.11042 * 359.65290 * 12 9 8 16 16 C 1.38030 * 120.12272 * 0.02797 * 15 12 9 17 17 C 1.50699 * 119.98610 * 179.97438 * 16 15 12 18 18 C 1.50697 * 109.47178 * 258.79794 * 17 16 15 19 19 H 1.08004 * 119.99864 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00113 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00295 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00203 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46837 * 90.00145 * 22 20 18 24 24 H 1.48500 * 109.47339 * 210.00226 * 22 20 18 25 25 H 1.48493 * 109.46920 * 330.00245 * 22 20 18 26 26 C 1.39491 * 120.03937 * 359.95571 * 6 5 4 27 27 C 1.37691 * 120.01782 * 0.02562 * 26 6 5 28 28 H 4.51953 * 14.05727 * 0.02562 * 4 2 1 29 29 H 1.07999 * 120.00983 * 0.26739 * 4 3 2 30 30 H 1.07994 * 119.99301 * 180.02562 * 5 4 3 31 31 H 1.08007 * 120.06271 * 359.97438 * 8 7 6 32 32 H 1.08999 * 109.47332 * 59.99309 * 11 10 9 33 33 H 1.08994 * 109.47385 * 179.97438 * 11 10 9 34 34 H 1.09006 * 109.46766 * 300.00147 * 11 10 9 35 35 H 1.08993 * 109.47214 * 179.97438 * 14 13 12 36 36 H 1.08997 * 109.47045 * 300.00197 * 14 13 12 37 37 H 1.09000 * 109.46719 * 60.00062 * 14 13 12 38 38 H 1.07991 * 119.93969 * 180.02562 * 15 12 9 39 39 H 1.08996 * 109.47205 * 18.80065 * 17 16 15 40 40 H 1.08999 * 109.46708 * 138.79720 * 17 16 15 41 41 H 0.96993 * 120.00273 * 179.97438 * 21 20 18 42 42 H 1.08000 * 119.99239 * 180.02562 * 26 6 5 43 43 H 1.08003 * 120.00559 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3046 0.3615 -1.1543 5 6 4.6814 0.3568 -1.1550 6 6 5.3787 -0.0090 -0.0034 7 6 6.8613 -0.0142 -0.0053 8 6 7.5560 -1.1792 0.3184 9 6 8.9387 -1.1816 0.3094 10 8 9.6190 -2.3177 0.6188 11 6 8.8411 -3.4736 0.9362 12 6 9.6346 -0.0179 -0.0100 13 8 10.9943 -0.0192 -0.0123 14 6 11.6437 1.2083 -0.3497 15 6 8.9432 1.1414 -0.3262 16 6 7.5629 1.1469 -0.3251 17 6 6.8144 2.4089 -0.6687 18 6 6.3280 3.0651 0.5978 19 1 6.5393 2.6131 1.5557 20 6 5.6122 4.2417 0.5335 21 7 5.3536 4.7913 -0.6330 22 14 5.0086 5.0547 2.1033 23 1 6.0410 5.9998 2.5998 24 1 3.7519 5.7955 1.8255 25 1 4.7532 4.0152 3.1325 26 6 4.6818 -0.3694 1.1499 27 6 3.3049 -0.3650 1.1525 28 1 -1.0500 0.0004 0.0005 29 1 2.7649 0.6443 -2.0460 30 1 5.2218 0.6362 -2.0474 31 1 7.0150 -2.0791 0.5713 32 1 8.2107 -3.7322 0.0855 33 1 9.5053 -4.3077 1.1626 34 1 8.2139 -3.2627 1.8024 35 1 12.7241 1.0697 -0.3133 36 1 11.3494 1.5107 -1.3547 37 1 11.3526 1.9808 0.3621 38 1 9.4855 2.0419 -0.5739 39 1 7.4776 3.0915 -1.1999 40 1 5.9616 2.1645 -1.3020 41 1 4.8497 5.6189 -0.6782 42 1 5.2224 -0.6521 2.0411 43 1 2.7656 -0.6445 2.0454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242294326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:32 Heat of formation + Delta-G solvation = 10.569981 kcal Electronic energy + Delta-G solvation = -26409.390441 eV Core-core repulsion = 22772.063276 eV Total energy + Delta-G solvation = -3637.327165 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61978 -40.18608 -39.33260 -38.11596 -35.15681 -34.76136 -32.67302 -32.29613 -31.79782 -29.80152 -29.33968 -28.02287 -27.49894 -25.33273 -24.14728 -23.44018 -22.50758 -21.74697 -19.83518 -19.26525 -18.45045 -18.06444 -17.67724 -16.95586 -16.85944 -16.49863 -16.27860 -16.09221 -15.97315 -15.36629 -15.25492 -14.79803 -14.55482 -14.51071 -14.20265 -13.86829 -13.78150 -13.43843 -13.25020 -13.07004 -12.81098 -12.60684 -12.49416 -12.35356 -12.29348 -12.06712 -12.01887 -11.85491 -11.78888 -11.38857 -11.35880 -11.14591 -10.53914 -9.82460 -9.66556 -9.26310 -8.51372 -8.12593 -6.23393 -0.15464 0.42433 0.53684 0.59079 1.36081 1.37694 1.47284 1.82674 2.10134 2.37684 2.40307 2.42811 2.77701 3.10099 3.17891 3.43861 3.70803 3.92623 4.05436 4.07660 4.12016 4.30412 4.38356 4.40944 4.46157 4.46926 4.48954 4.55058 4.68784 4.73637 4.74297 4.77074 4.78532 4.93728 5.13703 5.22656 5.28310 5.37469 5.44297 5.47757 5.54549 5.66704 5.75511 5.79765 5.97832 6.07393 6.15292 6.24472 6.62538 6.66533 6.85615 7.42475 8.93748 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009363 B = 0.005209 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.906354 B = 5374.068279 C = 7534.719243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.193 4.193 3 C -0.016 4.016 4 C -0.102 4.102 5 C -0.102 4.102 6 C -0.012 4.012 7 C -0.065 4.065 8 C -0.146 4.146 9 C 0.073 3.927 10 O -0.326 6.326 11 C 0.017 3.983 12 C 0.094 3.906 13 O -0.323 6.323 14 C 0.019 3.981 15 C -0.181 4.181 16 C -0.041 4.041 17 C 0.055 3.945 18 C -0.504 4.504 19 H 0.046 0.954 20 C 0.015 3.985 21 N -0.924 5.924 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.269 1.269 26 C -0.111 4.111 27 C -0.099 4.099 28 H 0.264 0.736 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.159 0.841 32 H 0.062 0.938 33 H 0.121 0.879 34 H 0.062 0.938 35 H 0.127 0.873 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.136 0.864 39 H 0.000 1.000 40 H 0.031 0.969 41 H 0.262 0.738 42 H 0.139 0.861 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 -14.309 1.742 14.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.193 4.193 3 C -0.016 4.016 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.012 4.012 7 C -0.065 4.065 8 C -0.164 4.164 9 C 0.028 3.972 10 O -0.241 6.241 11 C -0.077 4.077 12 C 0.049 3.951 13 O -0.237 6.237 14 C -0.075 4.075 15 C -0.200 4.200 16 C -0.041 4.041 17 C 0.019 3.981 18 C -0.542 4.542 19 H 0.065 0.935 20 C -0.183 4.183 21 N -0.565 5.565 22 Si 0.768 3.232 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.193 1.193 26 C -0.129 4.129 27 C -0.117 4.117 28 H 0.280 0.720 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.176 0.824 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.154 0.846 39 H 0.018 0.982 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.157 0.843 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.254 -14.355 1.718 14.512 hybrid contribution -0.601 1.354 0.408 1.537 sum 0.653 -13.001 2.126 13.190 Atomic orbital electron populations 1.25753 0.96370 0.97854 0.97407 1.20456 0.92607 1.03003 1.03217 1.16170 0.87477 1.03017 0.94899 1.21155 0.93795 0.99152 0.97940 1.21078 0.93895 0.98653 0.98362 1.18737 0.91508 0.97057 0.93892 1.18408 0.91962 0.92939 1.03197 1.21146 0.91309 0.99204 1.04787 1.18041 0.89829 0.85995 1.03330 1.86104 1.35835 1.17880 1.84272 1.23334 0.97823 0.85704 1.00846 1.18422 0.83112 0.92273 1.01307 1.86071 1.15363 1.37036 1.85229 1.23299 0.98926 0.84761 1.00509 1.20958 0.94351 0.97197 1.07514 1.20231 0.92966 0.95483 0.95464 1.18229 0.94533 0.88954 0.96407 1.21134 1.33610 1.06894 0.92589 0.93535 1.25627 0.96325 0.97781 0.98568 1.70040 1.41181 1.20042 1.25206 0.85780 0.77968 0.78816 0.80644 1.19836 1.20903 1.19336 1.21199 0.93869 1.00400 0.97420 1.21231 0.93794 0.99291 0.97382 0.71977 0.85231 0.86304 0.82402 0.91978 0.86068 0.91968 0.85527 0.92327 0.92783 0.84637 0.98190 0.95119 0.92945 0.84338 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 19.25 74.32 1.43 -2.25 16 2 C -0.19 -5.96 13.23 30.01 0.40 -5.56 16 3 C -0.02 -0.54 5.73 -21.35 -0.12 -0.67 16 4 C -0.10 -3.74 9.73 22.48 0.22 -3.52 16 5 C -0.10 -3.97 7.83 22.44 0.18 -3.79 16 6 C -0.01 -0.46 4.65 -20.00 -0.09 -0.55 16 7 C -0.06 -2.51 5.37 -20.05 -0.11 -2.61 16 8 C -0.15 -4.76 8.61 22.57 0.19 -4.56 16 9 C 0.07 2.48 6.69 22.53 0.15 2.63 16 10 O -0.33 -9.80 10.28 -79.48 -0.82 -10.62 16 11 C 0.02 0.33 9.81 113.37 1.11 1.44 16 12 C 0.09 3.43 6.70 22.62 0.15 3.58 16 13 O -0.32 -10.65 10.27 -79.18 -0.81 -11.46 16 14 C 0.02 0.48 9.81 113.37 1.11 1.59 16 15 C -0.18 -7.14 8.64 22.32 0.19 -6.95 16 16 C -0.04 -1.79 5.08 -19.64 -0.10 -1.89 16 17 C 0.06 2.85 4.57 29.10 0.13 2.98 16 18 C -0.50 -28.05 8.79 25.60 0.23 -27.83 16 19 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 20 C 0.02 0.86 5.46 84.65 0.46 1.32 16 21 N -0.92 -54.77 13.29 21.45 0.28 -54.49 16 22 Si 0.94 44.70 29.54 68.60 2.03 46.73 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 26 C -0.11 -3.79 9.60 22.44 0.22 -3.58 16 27 C -0.10 -3.22 9.73 22.48 0.22 -3.01 16 28 H 0.26 3.28 7.80 -4.42 -0.03 3.24 16 29 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 30 H 0.12 4.67 7.10 -2.91 -0.02 4.65 16 31 H 0.16 4.09 6.29 -2.91 -0.02 4.08 16 32 H 0.06 1.07 7.67 -2.39 -0.02 1.06 16 33 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.08 7.65 -2.38 -0.02 1.06 16 35 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.06 1.38 7.66 -2.39 -0.02 1.36 16 37 H 0.05 1.35 7.66 -2.39 -0.02 1.33 16 38 H 0.14 5.08 6.24 -2.92 -0.02 5.06 16 39 H 0.00 -0.01 7.99 -2.39 -0.02 -0.03 16 40 H 0.03 1.64 4.94 -2.39 -0.01 1.63 16 41 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 42 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 43 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -70.77 371.49 7.67 -63.10 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 1.02 Total: 19.95 kcal Atomic # 6 Polarization: -59.18 SS G_CDS: 5.97 Total: -53.22 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.28 Total: -54.49 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -1.63 Total: -22.08 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.77 7.67 -63.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242294326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.668 kcal (2) G-P(sol) polarization free energy of solvation -70.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds