Wall clock time and date at job start Tue Mar 31 2020 13:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35665 * 117.00235 * 2 1 4 4 C 1.37993 * 120.19666 * 0.23381 * 3 2 1 5 5 C 1.39611 * 119.93487 * 180.27385 * 4 3 2 6 6 C 1.48050 * 119.83917 * 179.74007 * 5 4 3 7 7 C 1.39729 * 120.17602 * 0.02836 * 6 5 4 8 8 C 1.37926 * 120.33342 * 180.09880 * 7 6 5 9 9 C 1.38491 * 120.57905 * 0.02562 * 8 7 6 10 10 C 1.39724 * 119.48300 * 359.80163 * 9 8 7 11 11 C 1.39254 * 120.17764 * 179.75024 * 6 5 4 12 12 C 1.47647 * 120.10020 * 180.36689 * 10 9 8 13 13 O 1.21252 * 121.16937 * 168.49044 * 12 10 9 14 14 C 1.51464 * 117.65438 * 348.47129 * 12 10 9 15 15 C 1.53438 * 107.36643 * 42.55620 * 14 12 10 16 16 C 1.50479 * 118.97727 * 179.48732 * 9 8 7 17 17 C 1.40068 * 120.32097 * 359.76571 * 5 4 3 18 18 C 1.36118 * 120.40460 * 359.95350 * 17 5 4 19 19 C 1.40913 * 120.05239 * 0.04427 * 18 17 5 20 20 C 1.40839 * 120.15968 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99536 * 205.53775 * 20 19 18 22 22 C 1.39998 * 120.00012 * 25.54070 * 20 19 18 23 23 N 1.30834 * 119.99859 * 17.25818 * 22 20 19 24 24 Si 1.86795 * 120.00093 * 197.25784 * 22 20 19 25 25 H 1.48506 * 109.47302 * 265.19281 * 24 22 20 26 26 H 1.48493 * 109.47149 * 25.19119 * 24 22 20 27 27 H 1.48503 * 109.47299 * 145.19539 * 24 22 20 28 28 H 1.08997 * 109.46723 * 300.00213 * 1 2 3 29 29 H 1.08999 * 109.46504 * 59.99886 * 1 2 3 30 30 H 1.08996 * 109.46949 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.03499 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.83036 * 0.11289 * 7 6 5 33 33 H 1.08004 * 119.71112 * 179.97438 * 8 7 6 34 34 H 1.08003 * 120.17194 * 359.95562 * 11 6 5 35 35 H 1.08997 * 109.87354 * 162.02255 * 14 12 10 36 36 H 1.09000 * 109.87746 * 283.01884 * 14 12 10 37 37 H 1.09001 * 109.48604 * 55.93555 * 15 14 12 38 38 H 1.08996 * 109.48745 * 175.97650 * 15 14 12 39 39 H 1.08993 * 109.11798 * 278.01129 * 16 9 8 40 40 H 1.08996 * 109.11922 * 37.09027 * 16 9 8 41 41 H 1.08010 * 119.79700 * 179.97438 * 17 5 4 42 42 H 1.07992 * 119.97419 * 180.02562 * 18 17 5 43 43 H 0.97002 * 119.99830 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2975 2.3687 0.0049 5 6 1.9370 3.6097 -0.0009 6 6 1.1329 4.8528 -0.0015 7 6 -0.2628 4.7864 0.0043 8 6 -1.0151 5.9424 0.0017 9 6 -0.4001 7.1832 -0.0072 10 6 0.9951 7.2592 -0.0094 11 6 1.7635 6.0943 -0.0021 12 6 1.6650 8.5750 -0.0107 13 8 2.8560 8.6730 0.1944 14 6 0.8120 9.7978 -0.2777 15 6 -0.4916 9.6287 0.5136 16 6 -1.2558 8.4210 -0.0215 17 6 3.3357 3.6844 -0.0068 18 6 4.0862 2.5488 -0.0059 19 6 3.4578 1.2876 0.0000 20 6 4.2322 0.1112 0.0004 21 1 3.8226 -0.8050 -0.3987 22 6 5.5327 0.1294 0.5182 23 7 5.9139 1.1109 1.2949 24 14 6.7239 -1.2475 0.1003 25 1 6.6876 -2.2755 1.1714 26 1 6.3325 -1.8652 -1.1920 27 1 8.0984 -0.6964 -0.0105 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2188 2.3165 0.0091 32 1 -0.7549 3.8251 0.0111 33 1 -2.0933 5.8794 0.0059 34 1 2.8418 6.1555 -0.0013 35 1 1.3347 10.6942 0.0561 36 1 0.5933 9.8717 -1.3430 37 1 -0.2598 9.4745 1.5675 38 1 -1.1029 10.5242 0.4030 39 1 -1.5731 8.6237 -1.0443 40 1 -2.1369 8.2530 0.5978 41 1 3.8216 4.6490 -0.0116 42 1 5.1641 2.6145 -0.0099 43 1 6.8149 1.1233 1.6540 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242856610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:33 Heat of formation + Delta-G solvation = -45.762639 kcal Electronic energy + Delta-G solvation = -25875.225473 eV Core-core repulsion = 22235.455542 eV Total energy + Delta-G solvation = -3639.769931 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.24186 -38.87063 -37.90749 -36.39119 -35.38871 -33.81058 -31.40933 -30.92195 -29.35726 -28.78362 -27.84775 -26.62342 -25.07163 -23.24275 -22.77712 -21.47123 -20.92059 -20.12290 -18.67127 -17.68575 -16.86985 -16.19958 -15.73428 -15.56280 -15.32595 -14.78828 -14.72104 -14.59313 -14.32872 -14.07233 -13.73524 -13.62142 -13.29579 -13.12366 -12.95603 -12.51416 -12.36477 -12.13226 -11.77838 -11.68984 -11.42997 -11.32160 -11.23578 -11.16238 -10.93379 -10.87589 -10.73299 -10.56048 -10.11246 -9.77678 -9.67341 -9.42164 -9.36750 -8.68506 -8.49829 -7.36511 -7.09820 -6.85392 -4.35399 0.92202 1.49777 2.44088 2.79943 2.95420 3.00533 3.05303 3.14651 3.81804 4.07739 4.11681 4.41945 4.58877 4.62129 4.65580 4.82059 5.07836 5.17445 5.33580 5.38952 5.45851 5.50244 5.54689 5.61581 5.69093 5.70186 5.76476 5.80192 5.90583 5.94137 5.97675 6.04886 6.15198 6.27894 6.45828 6.59784 6.66420 6.74719 6.88173 6.93796 7.17243 7.24098 7.27988 7.59931 7.61812 7.66569 7.95072 8.03951 8.28134 8.51634 8.63945 8.92339 9.97576 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.003165 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.211060 B = 8845.955985 C =10290.665711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.006 3.994 4 C -0.148 4.148 5 C -0.181 4.181 6 C 0.010 3.990 7 C -0.113 4.113 8 C -0.122 4.122 9 C -0.079 4.079 10 C -0.160 4.160 11 C -0.083 4.083 12 C 0.398 3.602 13 O -0.458 6.458 14 C -0.163 4.163 15 C -0.112 4.112 16 C -0.079 4.079 17 C -0.091 4.091 18 C -0.156 4.156 19 C 0.110 3.890 20 C -0.424 4.424 21 H 0.088 0.912 22 C 0.070 3.930 23 N -0.777 5.777 24 Si 0.914 3.086 25 H -0.268 1.268 26 H -0.258 1.258 27 H -0.273 1.273 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.126 0.874 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.679 9.785 -2.237 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.227 6.227 3 C -0.038 4.038 4 C -0.167 4.167 5 C -0.182 4.182 6 C 0.010 3.990 7 C -0.131 4.131 8 C -0.140 4.140 9 C -0.079 4.079 10 C -0.161 4.161 11 C -0.101 4.101 12 C 0.277 3.723 13 O -0.333 6.333 14 C -0.201 4.201 15 C -0.150 4.150 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.176 4.176 19 C 0.107 3.893 20 C -0.452 4.452 21 H 0.106 0.894 22 C -0.150 4.150 23 N -0.400 5.400 24 Si 0.738 3.262 25 H -0.193 1.193 26 H -0.181 1.181 27 H -0.198 1.198 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.149 0.851 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.143 0.857 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.745 9.718 -1.973 14.622 hybrid contribution 0.161 -0.488 -0.028 0.515 sum -10.585 9.230 -2.001 14.186 Atomic orbital electron populations 1.22744 0.81662 1.01866 0.99933 1.85965 1.18280 1.28037 1.90409 1.19038 0.92250 0.82686 1.09810 1.20634 0.97308 0.91947 1.06827 1.17708 0.92346 0.89834 1.18329 1.18936 0.92520 0.92833 0.94725 1.21331 0.93523 0.98065 1.00195 1.20844 0.99255 0.91720 1.02214 1.19788 0.92199 0.94738 1.01216 1.20069 0.93569 0.94397 1.08043 1.21482 1.00257 0.90622 0.97735 1.22802 0.88037 0.90230 0.71262 1.90525 1.17179 1.88858 1.36731 1.22296 0.97346 0.97699 1.02769 1.21479 0.95105 0.98360 1.00045 1.20370 0.97488 0.91796 1.01895 1.20500 0.92458 0.97519 1.00429 1.20752 0.99712 0.90460 1.06642 1.17179 0.87471 0.94097 0.90571 1.19620 0.96578 0.96971 1.32024 0.89401 1.26057 0.98981 0.97244 0.92736 1.69824 1.19587 1.30054 1.20570 0.86189 0.78965 0.80734 0.80349 1.19326 1.18142 1.19821 0.94129 0.94191 0.89926 0.88087 0.86138 0.86339 0.85077 0.89185 0.88219 0.91289 0.90570 0.90495 0.90550 0.88678 0.85664 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.81 101.05 0.99 1.55 16 2 O -0.31 -6.99 9.78 -18.70 -0.18 -7.18 16 3 C 0.01 0.15 6.71 -38.43 -0.26 -0.11 16 4 C -0.15 -3.25 8.40 -39.16 -0.33 -3.58 16 5 C -0.18 -4.00 5.89 -104.67 -0.62 -4.61 16 6 C 0.01 0.19 5.87 -104.94 -0.62 -0.42 16 7 C -0.11 -1.84 9.41 -39.14 -0.37 -2.21 16 8 C -0.12 -1.66 9.63 -39.60 -0.38 -2.05 16 9 C -0.08 -1.06 5.79 -104.08 -0.60 -1.66 16 10 C -0.16 -2.55 5.82 -105.01 -0.61 -3.16 16 11 C -0.08 -1.54 8.98 -38.71 -0.35 -1.89 16 12 C 0.40 5.95 6.89 -30.09 -0.21 5.74 16 13 O -0.46 -8.36 17.25 5.58 0.10 -8.26 16 14 C -0.16 -1.64 6.19 -27.28 -0.17 -1.81 16 15 C -0.11 -0.95 5.90 -26.70 -0.16 -1.11 16 16 C -0.08 -0.72 5.70 -28.19 -0.16 -0.89 16 17 C -0.09 -2.12 9.35 -39.66 -0.37 -2.49 16 18 C -0.16 -3.96 8.61 -39.33 -0.34 -4.30 16 19 C 0.11 2.88 5.58 -106.66 -0.59 2.28 16 20 C -0.42 -10.99 8.70 -37.94 -0.33 -11.32 16 21 H 0.09 2.25 7.65 -52.49 -0.40 1.84 16 22 C 0.07 1.69 5.14 -17.32 -0.09 1.60 16 23 N -0.78 -19.33 10.98 55.55 0.61 -18.72 16 24 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 25 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 26 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 27 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 28 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 29 H 0.04 0.60 7.67 -51.93 -0.40 0.20 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.91 4.41 -52.49 -0.23 1.68 16 32 H 0.12 1.82 6.17 -52.49 -0.32 1.50 16 33 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.13 2.56 5.83 -52.48 -0.31 2.25 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 41 H 0.10 2.06 6.17 -52.48 -0.32 1.74 16 42 H 0.13 3.24 6.19 -52.49 -0.33 2.91 16 43 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -29.25 352.31 -9.98 -39.23 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.22 Total: 7.03 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -5.56 Total: -30.43 kcal Atomic # 7 Polarization: -19.33 SS G_CDS: 0.61 Total: -18.72 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.09 Total: -15.44 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.25 -9.98 -39.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242856610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.534 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds