Wall clock time and date at job start Tue Mar 31 2020 13:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35665 * 117.00235 * 2 1 4 4 C 1.37993 * 120.19666 * 0.23381 * 3 2 1 5 5 C 1.39611 * 119.93487 * 180.27385 * 4 3 2 6 6 C 1.48050 * 119.83917 * 179.74007 * 5 4 3 7 7 C 1.39729 * 120.17602 * 0.02836 * 6 5 4 8 8 C 1.37926 * 120.33342 * 180.09880 * 7 6 5 9 9 C 1.38491 * 120.57905 * 0.02562 * 8 7 6 10 10 C 1.39724 * 119.48300 * 359.80163 * 9 8 7 11 11 C 1.39254 * 120.17764 * 179.75024 * 6 5 4 12 12 C 1.47647 * 120.10020 * 180.36689 * 10 9 8 13 13 O 1.21252 * 121.16937 * 168.49044 * 12 10 9 14 14 C 1.51464 * 117.65438 * 348.47129 * 12 10 9 15 15 C 1.53438 * 107.36643 * 42.55620 * 14 12 10 16 16 C 1.50479 * 118.97727 * 179.48732 * 9 8 7 17 17 C 1.40068 * 120.32097 * 359.76571 * 5 4 3 18 18 C 1.36118 * 120.40460 * 359.95350 * 17 5 4 19 19 C 1.40913 * 120.05239 * 0.04427 * 18 17 5 20 20 C 1.40839 * 120.15968 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99536 * 205.53775 * 20 19 18 22 22 C 1.39998 * 120.00012 * 25.54070 * 20 19 18 23 23 N 1.30834 * 119.99859 * 17.25818 * 22 20 19 24 24 Si 1.86795 * 120.00093 * 197.25784 * 22 20 19 25 25 H 1.48506 * 109.47302 * 265.19281 * 24 22 20 26 26 H 1.48493 * 109.47149 * 25.19119 * 24 22 20 27 27 H 1.48503 * 109.47299 * 145.19539 * 24 22 20 28 28 H 1.08997 * 109.46723 * 300.00213 * 1 2 3 29 29 H 1.08999 * 109.46504 * 59.99886 * 1 2 3 30 30 H 1.08996 * 109.46949 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.03499 * 0.02562 * 4 3 2 32 32 H 1.07995 * 119.83036 * 0.11289 * 7 6 5 33 33 H 1.08004 * 119.71112 * 179.97438 * 8 7 6 34 34 H 1.08003 * 120.17194 * 359.95562 * 11 6 5 35 35 H 1.08997 * 109.87354 * 162.02255 * 14 12 10 36 36 H 1.09000 * 109.87746 * 283.01884 * 14 12 10 37 37 H 1.09001 * 109.48604 * 55.93555 * 15 14 12 38 38 H 1.08996 * 109.48745 * 175.97650 * 15 14 12 39 39 H 1.08993 * 109.11798 * 278.01129 * 16 9 8 40 40 H 1.08996 * 109.11922 * 37.09027 * 16 9 8 41 41 H 1.08010 * 119.79700 * 179.97438 * 17 5 4 42 42 H 1.07992 * 119.97419 * 180.02562 * 18 17 5 43 43 H 0.97002 * 119.99830 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2975 2.3687 0.0049 5 6 1.9370 3.6097 -0.0009 6 6 1.1329 4.8528 -0.0015 7 6 -0.2628 4.7864 0.0043 8 6 -1.0151 5.9424 0.0017 9 6 -0.4001 7.1832 -0.0072 10 6 0.9951 7.2592 -0.0094 11 6 1.7635 6.0943 -0.0021 12 6 1.6650 8.5750 -0.0107 13 8 2.8560 8.6730 0.1944 14 6 0.8120 9.7978 -0.2777 15 6 -0.4916 9.6287 0.5136 16 6 -1.2558 8.4210 -0.0215 17 6 3.3357 3.6844 -0.0068 18 6 4.0862 2.5488 -0.0059 19 6 3.4578 1.2876 0.0000 20 6 4.2322 0.1112 0.0004 21 1 3.8226 -0.8050 -0.3987 22 6 5.5327 0.1294 0.5182 23 7 5.9139 1.1109 1.2949 24 14 6.7239 -1.2475 0.1003 25 1 6.6876 -2.2755 1.1714 26 1 6.3325 -1.8652 -1.1920 27 1 8.0984 -0.6964 -0.0105 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2188 2.3165 0.0091 32 1 -0.7549 3.8251 0.0111 33 1 -2.0933 5.8794 0.0059 34 1 2.8418 6.1555 -0.0013 35 1 1.3347 10.6942 0.0561 36 1 0.5933 9.8717 -1.3430 37 1 -0.2598 9.4745 1.5675 38 1 -1.1029 10.5242 0.4030 39 1 -1.5731 8.6237 -1.0443 40 1 -2.1369 8.2530 0.5978 41 1 3.8216 4.6490 -0.0116 42 1 5.1641 2.6145 -0.0099 43 1 6.8149 1.1233 1.6540 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242856610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:32 Heat of formation + Delta-G solvation = -60.465654 kcal Electronic energy + Delta-G solvation = -25875.863044 eV Core-core repulsion = 22235.455542 eV Total energy + Delta-G solvation = -3640.407502 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44975 -40.52768 -39.24857 -37.95678 -36.62956 -35.41698 -32.81637 -32.27741 -30.88002 -30.38779 -28.99335 -28.09104 -26.65562 -24.50198 -24.06853 -22.65449 -22.46745 -21.71063 -19.84851 -19.47000 -18.38840 -17.50933 -17.13198 -16.95930 -16.70461 -16.26285 -16.13265 -16.02226 -15.55107 -15.39819 -15.03768 -14.81407 -14.63339 -14.42245 -14.24250 -14.00555 -13.79593 -13.49365 -13.24567 -13.01464 -12.83589 -12.78536 -12.64196 -12.47893 -12.17932 -12.03046 -11.98321 -11.81637 -11.61469 -11.51818 -11.34181 -11.11693 -10.56674 -10.04043 -9.93745 -9.09384 -8.84585 -8.61149 -6.24501 -0.32306 0.08344 1.01515 1.06896 1.35226 1.38417 1.51097 1.60646 2.17522 2.57601 2.86703 2.97809 3.06256 3.65336 3.71979 3.79074 3.93337 4.03319 4.09354 4.13995 4.27345 4.40176 4.43283 4.46770 4.47949 4.49406 4.64857 4.73826 4.76516 4.80902 4.94690 4.99663 5.02119 5.08493 5.11588 5.21876 5.29279 5.32832 5.34411 5.43952 5.50424 5.55926 5.75572 5.83913 6.02985 6.16425 6.18903 6.42550 6.49402 6.69182 6.79787 7.16322 8.24300 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.003165 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.211060 B = 8845.955985 C =10290.665711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.337 6.337 3 C -0.001 4.001 4 C -0.153 4.153 5 C -0.166 4.166 6 C -0.031 4.031 7 C -0.104 4.104 8 C -0.118 4.118 9 C -0.048 4.048 10 C -0.183 4.183 11 C -0.101 4.101 12 C 0.392 3.608 13 O -0.507 6.507 14 C -0.155 4.155 15 C -0.109 4.109 16 C -0.081 4.081 17 C -0.113 4.113 18 C -0.171 4.171 19 C 0.070 3.930 20 C -0.468 4.468 21 H 0.078 0.922 22 C 0.031 3.969 23 N -0.818 5.818 24 Si 0.986 3.014 25 H -0.261 1.261 26 H -0.258 1.258 27 H -0.264 1.264 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.167 0.833 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.569 12.121 -2.724 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.252 6.252 3 C -0.046 4.046 4 C -0.171 4.171 5 C -0.167 4.167 6 C -0.031 4.031 7 C -0.122 4.122 8 C -0.135 4.135 9 C -0.048 4.048 10 C -0.184 4.184 11 C -0.119 4.119 12 C 0.273 3.727 13 O -0.386 6.386 14 C -0.192 4.192 15 C -0.146 4.146 16 C -0.117 4.117 17 C -0.131 4.131 18 C -0.191 4.191 19 C 0.068 3.932 20 C -0.496 4.496 21 H 0.096 0.904 22 C -0.185 4.185 23 N -0.443 5.443 24 Si 0.806 3.194 25 H -0.185 1.185 26 H -0.181 1.181 27 H -0.188 1.188 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.184 0.816 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.142 0.858 37 H 0.077 0.923 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.679 12.069 -2.462 19.939 hybrid contribution 1.282 -0.852 0.107 1.543 sum -14.397 11.216 -2.356 18.402 Atomic orbital electron populations 1.23129 0.78477 1.04432 1.01073 1.85919 1.21641 1.27393 1.90296 1.19193 0.92046 0.84099 1.09212 1.20922 0.98940 0.90902 1.06365 1.18138 0.92053 0.91738 1.14801 1.18874 0.94009 0.91450 0.98739 1.21602 0.92017 1.00190 0.98399 1.21364 1.01423 0.90437 1.00324 1.20466 0.91213 0.97125 0.96031 1.20412 0.95166 0.94050 1.08769 1.21421 0.99425 0.92091 0.98973 1.23612 0.87820 0.91689 0.69535 1.90513 1.19428 1.89508 1.39122 1.22368 0.97286 0.94975 1.04584 1.21546 0.94295 0.99830 0.98965 1.20603 0.97347 0.89421 1.04363 1.20636 0.93716 0.97034 1.01754 1.20677 0.99112 0.91343 1.07985 1.17506 0.89144 0.94356 0.92239 1.19673 0.98317 0.96721 1.34912 0.90396 1.26870 1.00016 0.99688 0.91897 1.69878 1.20282 1.32162 1.21995 0.85135 0.76726 0.77586 0.79968 1.18510 1.18126 1.18805 0.93052 0.92673 0.86865 0.84593 0.84651 0.81562 0.87980 0.88201 0.85827 0.92286 0.86642 0.87579 0.87551 0.88509 0.87501 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 9.81 113.37 1.11 1.85 16 2 O -0.34 -15.46 9.78 -89.81 -0.88 -16.34 16 3 C 0.00 -0.05 6.71 23.02 0.15 0.10 16 4 C -0.15 -6.78 8.40 22.54 0.19 -6.59 16 5 C -0.17 -7.63 5.89 -19.90 -0.12 -7.75 16 6 C -0.03 -1.18 5.87 -20.07 -0.12 -1.30 16 7 C -0.10 -3.08 9.41 22.56 0.21 -2.86 16 8 C -0.12 -2.57 9.63 22.26 0.21 -2.36 16 9 C -0.05 -1.06 5.79 -19.51 -0.11 -1.17 16 10 C -0.18 -5.59 5.82 -20.12 -0.12 -5.71 16 11 C -0.10 -3.87 8.98 22.83 0.21 -3.67 16 12 C 0.39 11.34 6.89 28.42 0.20 11.53 16 13 O -0.51 -19.23 17.25 -2.94 -0.05 -19.28 16 14 C -0.15 -2.51 6.19 30.24 0.19 -2.32 16 15 C -0.11 -1.21 5.90 30.61 0.18 -1.03 16 16 C -0.08 -0.92 5.70 29.65 0.17 -0.75 16 17 C -0.11 -5.75 9.35 22.22 0.21 -5.54 16 18 C -0.17 -9.54 8.61 22.43 0.19 -9.35 16 19 C 0.07 3.97 5.58 -21.18 -0.12 3.85 16 20 C -0.47 -26.20 8.70 23.33 0.20 -26.00 16 21 H 0.08 4.31 7.65 -2.91 -0.02 4.29 16 22 C 0.03 1.60 5.14 85.27 0.44 2.04 16 23 N -0.82 -44.00 10.98 21.84 0.24 -43.76 16 24 Si 0.99 39.20 29.59 68.60 2.03 41.23 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 27 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 28 H 0.05 1.48 7.65 -2.39 -0.02 1.46 16 29 H 0.05 1.54 7.67 -2.39 -0.02 1.52 16 30 H 0.11 2.78 8.14 -2.39 -0.02 2.77 16 31 H 0.14 4.89 4.41 -2.91 -0.01 4.88 16 32 H 0.14 3.55 6.17 -2.91 -0.02 3.53 16 33 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.10 4.41 5.83 -2.91 -0.02 4.39 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.11 0.76 8.10 -2.39 -0.02 0.74 16 41 H 0.10 4.71 6.17 -2.91 -0.02 4.70 16 42 H 0.11 6.18 6.19 -2.91 -0.02 6.16 16 43 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 Total: -1.00 -73.73 352.31 5.67 -68.06 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 1.05 Total: 27.12 kcal Atomic # 6 Polarization: -60.31 SS G_CDS: 3.28 Total: -57.03 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.24 Total: -43.76 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.93 Total: -35.61 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -73.73 5.67 -68.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242856610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.596 kcal (2) G-P(sol) polarization free energy of solvation -73.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds