Wall clock time and date at job start Tue Mar 31 2020 13:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35878 * 116.99957 * 2 1 4 4 C 1.39461 * 119.78089 * 0.02562 * 3 2 1 5 5 C 1.37959 * 120.61677 * 179.74208 * 4 3 2 6 6 C 1.39156 * 120.16572 * 0.52112 * 5 4 3 7 7 C 1.47862 * 120.21632 * 179.73746 * 6 5 4 8 8 C 1.39814 * 120.18316 * 129.72312 * 7 6 5 9 9 C 1.37902 * 120.32482 * 180.11276 * 8 7 6 10 10 C 1.38519 * 120.59519 * 359.97438 * 9 8 7 11 11 C 1.39745 * 119.48951 * 359.85508 * 10 9 8 12 12 C 1.39351 * 120.19231 * 309.72845 * 7 6 5 13 13 C 1.47640 * 120.09857 * 180.24765 * 11 10 9 14 14 O 1.21256 * 121.17344 * 168.67248 * 13 11 10 15 15 C 1.51466 * 117.65681 * 348.94178 * 13 11 10 16 16 C 1.53065 * 107.54917 * 42.17364 * 15 13 11 17 17 C 1.50470 * 118.96858 * 179.72908 * 10 9 8 18 18 C 1.41888 * 119.55996 * 359.46769 * 6 5 4 19 19 C 1.40901 * 120.29549 * 180.29877 * 18 6 5 20 20 H 1.08004 * 120.00037 * 334.04730 * 19 18 6 21 21 C 1.40042 * 120.00058 * 154.05318 * 19 18 6 22 22 N 1.30789 * 120.00141 * 344.16116 * 21 19 18 23 23 Si 1.86800 * 120.00217 * 164.16683 * 21 19 18 24 24 H 1.48500 * 109.47214 * 89.99555 * 23 21 19 25 25 H 1.48504 * 109.47254 * 209.99670 * 23 21 19 26 26 H 1.48502 * 109.47076 * 329.99354 * 23 21 19 27 27 C 1.37931 * 119.78275 * 180.02562 * 3 2 1 28 28 H 1.08992 * 109.47561 * 300.00184 * 1 2 3 29 29 H 1.08996 * 109.47398 * 60.00595 * 1 2 3 30 30 H 1.09007 * 109.47015 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.68806 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.91577 * 180.28340 * 5 4 3 33 33 H 1.07990 * 119.83997 * 0.09824 * 8 7 6 34 34 H 1.08003 * 119.70644 * 180.02562 * 9 8 7 35 35 H 1.07998 * 120.16862 * 359.97438 * 12 7 6 36 36 H 1.08998 * 109.88701 * 161.72764 * 15 13 11 37 37 H 1.09008 * 109.87953 * 282.80344 * 15 13 11 38 38 H 1.08991 * 109.52190 * 176.10927 * 16 15 13 39 39 H 1.09005 * 109.33939 * 56.13516 * 16 15 13 40 40 H 1.08999 * 109.11646 * 278.02646 * 17 10 9 41 41 H 1.08997 * 109.11773 * 37.16125 * 17 10 9 42 42 H 0.96998 * 120.00455 * 180.02562 * 22 21 19 43 43 H 1.07999 * 120.09460 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2817 2.3774 0.0005 5 6 1.8900 3.6156 0.0059 6 6 3.2782 3.7128 -0.0001 7 6 3.9313 5.0393 -0.0002 8 6 4.9389 5.3269 0.9254 9 6 5.5484 6.5639 0.9294 10 6 5.1731 7.5377 0.0186 11 6 4.1694 7.2583 -0.9128 12 6 3.5461 6.0101 -0.9228 13 6 3.7627 8.2844 -1.8932 14 8 3.0481 8.0066 -2.8327 15 6 4.2745 9.6951 -1.6878 16 6 5.7469 9.5972 -1.2811 17 6 5.8582 8.8768 0.0597 18 6 4.0626 2.5305 -0.0003 19 6 5.4694 2.6108 0.0000 20 1 5.9606 3.4814 -0.4090 21 6 6.2305 1.5618 0.5305 22 7 5.6640 0.6639 1.2943 23 14 8.0551 1.4450 0.1474 24 1 8.8252 2.1925 1.1737 25 1 8.4725 0.0199 0.1559 26 1 8.3180 2.0297 -1.1921 27 6 3.4235 1.2777 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2038 2.3109 0.0014 32 1 1.2874 4.5118 0.0109 33 1 5.2412 4.5767 1.6410 34 1 6.3259 6.7751 1.6487 35 1 2.7689 5.7973 -1.6420 36 1 4.1834 10.2612 -2.6148 37 1 3.7063 10.1841 -0.8965 38 1 6.1675 10.5987 -1.1917 39 1 6.2948 9.0391 -2.0404 40 1 5.3970 9.4901 0.8338 41 1 6.9114 8.7317 0.2996 42 1 6.1912 -0.0625 1.6620 43 1 4.0097 0.3707 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242857005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:36 Heat of formation + Delta-G solvation = -50.112985 kcal Electronic energy + Delta-G solvation = -26301.254942 eV Core-core repulsion = 22661.296366 eV Total energy + Delta-G solvation = -3639.958576 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.10119 -38.83625 -37.87968 -36.54465 -35.08569 -33.66622 -31.23893 -30.65287 -29.74675 -28.70261 -27.63001 -26.08531 -25.26784 -23.06774 -22.71548 -21.39563 -20.78591 -20.25168 -18.47057 -17.79342 -16.35131 -16.20303 -15.85699 -15.41677 -15.14109 -14.85338 -14.74601 -14.52544 -14.38461 -14.13696 -13.55307 -13.31305 -13.16129 -13.10332 -12.85460 -12.54557 -12.40146 -11.88420 -11.60480 -11.49332 -11.34090 -11.29722 -11.24090 -11.12758 -11.00931 -10.84335 -10.60109 -10.48458 -10.08531 -9.89225 -9.62389 -9.30211 -9.24188 -8.44033 -8.10539 -7.57209 -6.99226 -6.68836 -4.51277 1.13005 1.79177 2.65219 2.72585 2.99818 3.01587 3.05244 3.14371 3.83586 4.22467 4.26092 4.29142 4.51475 4.73850 4.76543 4.91334 5.23055 5.34361 5.44451 5.53267 5.55719 5.61703 5.64066 5.70614 5.71415 5.77979 5.88358 5.93720 6.00646 6.05961 6.08264 6.17686 6.29491 6.44640 6.54385 6.76163 6.81170 6.91557 6.95704 7.10520 7.30578 7.34286 7.46141 7.62878 7.73209 7.74766 7.90237 7.96478 8.27772 8.65396 8.73339 8.82038 10.03391 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010963 B = 0.004550 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.477691 B = 6152.194201 C = 8167.808687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.135 3.865 4 C -0.316 4.316 5 C -0.039 4.039 6 C -0.210 4.210 7 C 0.011 3.989 8 C -0.062 4.062 9 C -0.140 4.140 10 C -0.062 4.062 11 C -0.176 4.176 12 C -0.072 4.072 13 C 0.401 3.599 14 O -0.463 6.463 15 C -0.163 4.163 16 C -0.112 4.112 17 C -0.081 4.081 18 C 0.157 3.843 19 C -0.448 4.448 20 H 0.086 0.914 21 C 0.077 3.923 22 N -0.778 5.778 23 Si 0.905 3.095 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.259 1.259 27 C -0.193 4.193 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.284 0.716 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.398 10.708 0.386 10.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.091 3.909 4 C -0.335 4.335 5 C -0.057 4.057 6 C -0.211 4.211 7 C 0.011 3.989 8 C -0.080 4.080 9 C -0.158 4.158 10 C -0.062 4.062 11 C -0.177 4.177 12 C -0.090 4.090 13 C 0.279 3.721 14 O -0.339 6.339 15 C -0.201 4.201 16 C -0.150 4.150 17 C -0.118 4.118 18 C 0.154 3.846 19 C -0.476 4.476 20 H 0.104 0.896 21 C -0.143 4.143 22 N -0.402 5.402 23 Si 0.729 3.271 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.183 1.183 27 C -0.213 4.213 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.153 0.847 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.171 10.159 0.044 10.161 hybrid contribution 0.523 -0.106 0.053 0.537 sum 0.694 10.054 0.097 10.078 Atomic orbital electron populations 1.22766 0.80702 1.01918 1.00566 1.86006 1.19569 1.29054 1.89691 1.19020 0.92486 0.82505 0.96911 1.20372 0.97426 0.92447 1.23300 1.20342 0.93247 0.95354 0.96743 1.18486 0.92113 0.90904 1.19646 1.18768 0.94364 0.92803 0.93006 1.21685 0.93761 0.95420 0.97172 1.20945 1.01454 0.93687 0.99729 1.19858 0.95944 0.95349 0.95059 1.19989 1.01500 0.96055 1.00184 1.21555 0.98842 0.91396 0.97240 1.22777 0.76513 0.90206 0.82564 1.90505 1.30261 1.83886 1.29280 1.22228 0.97971 0.96033 1.03881 1.21414 0.94920 1.01091 0.97571 1.20399 1.00603 0.93187 0.97572 1.17197 0.92735 0.88852 0.85815 1.19563 0.90956 1.03179 1.33907 0.89643 1.25976 1.01359 0.94265 0.92722 1.69809 1.38584 1.10699 1.21076 0.86349 0.81819 0.78550 0.80430 1.19248 1.19924 1.18251 1.20546 0.89345 0.99144 1.12274 0.93628 0.93650 0.89870 0.88476 0.88855 0.84707 0.86301 0.85725 0.89325 0.88346 0.90653 0.91298 0.90451 0.90423 0.90491 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.80 101.05 0.99 1.57 16 2 O -0.33 -7.18 10.48 -19.36 -0.20 -7.39 16 3 C 0.13 3.23 6.67 -39.24 -0.26 2.97 16 4 C -0.32 -7.01 9.02 -39.23 -0.35 -7.36 16 5 C -0.04 -0.86 9.49 -39.34 -0.37 -1.23 16 6 C -0.21 -4.92 5.53 -104.22 -0.58 -5.50 16 7 C 0.01 0.22 4.91 -104.95 -0.52 -0.29 16 8 C -0.06 -1.19 7.96 -39.12 -0.31 -1.50 16 9 C -0.14 -2.21 9.63 -39.60 -0.38 -2.59 16 10 C -0.06 -0.91 5.79 -104.07 -0.60 -1.51 16 11 C -0.18 -2.99 5.81 -105.02 -0.61 -3.60 16 12 C -0.07 -1.41 9.08 -38.69 -0.35 -1.76 16 13 C 0.40 6.27 6.90 -30.10 -0.21 6.06 16 14 O -0.46 -8.71 17.25 5.58 0.10 -8.61 16 15 C -0.16 -1.77 6.16 -27.47 -0.17 -1.94 16 16 C -0.11 -1.07 5.88 -26.90 -0.16 -1.22 16 17 C -0.08 -0.84 5.70 -28.19 -0.16 -1.01 16 18 C 0.16 3.99 5.56 -106.59 -0.59 3.40 16 19 C -0.45 -11.06 7.13 -37.90 -0.27 -11.33 16 20 H 0.09 2.07 6.58 -52.48 -0.35 1.73 16 21 C 0.08 1.82 5.17 -17.32 -0.09 1.73 16 22 N -0.78 -19.16 10.93 55.55 0.61 -18.55 16 23 Si 0.90 17.87 29.59 -169.99 -5.03 12.84 16 24 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 27 C -0.19 -5.01 8.59 -38.79 -0.33 -5.34 16 28 H 0.05 0.70 7.64 -51.93 -0.40 0.30 16 29 H 0.04 0.68 7.65 -51.93 -0.40 0.29 16 30 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 31 H 0.10 1.90 6.25 -52.48 -0.33 1.57 16 32 H 0.09 1.87 8.04 -52.49 -0.42 1.44 16 33 H 0.14 2.72 7.29 -52.49 -0.38 2.34 16 34 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.12 2.51 7.70 -52.49 -0.40 2.10 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 42 H 0.28 6.38 8.30 -40.82 -0.34 6.05 16 43 H 0.13 3.48 6.19 -52.49 -0.32 3.15 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -28.61 355.00 -10.02 -38.63 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.51 Total: 8.18 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -5.33 Total: -30.46 kcal Atomic # 7 Polarization: -19.16 SS G_CDS: 0.61 Total: -18.55 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.11 Total: -16.00 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.61 -10.02 -38.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242857005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.479 kcal (2) G-P(sol) polarization free energy of solvation -28.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds