Wall clock time and date at job start Tue Mar 31 2020 13:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35878 * 116.99957 * 2 1 4 4 C 1.39461 * 119.78089 * 0.02562 * 3 2 1 5 5 C 1.37959 * 120.61677 * 179.74208 * 4 3 2 6 6 C 1.39156 * 120.16572 * 0.52112 * 5 4 3 7 7 C 1.47862 * 120.21632 * 179.73746 * 6 5 4 8 8 C 1.39814 * 120.18316 * 129.72312 * 7 6 5 9 9 C 1.37902 * 120.32482 * 180.11276 * 8 7 6 10 10 C 1.38519 * 120.59519 * 359.97438 * 9 8 7 11 11 C 1.39745 * 119.48951 * 359.85508 * 10 9 8 12 12 C 1.39351 * 120.19231 * 309.72845 * 7 6 5 13 13 C 1.47640 * 120.09857 * 180.24765 * 11 10 9 14 14 O 1.21256 * 121.17344 * 168.67248 * 13 11 10 15 15 C 1.51466 * 117.65681 * 348.94178 * 13 11 10 16 16 C 1.53065 * 107.54917 * 42.17364 * 15 13 11 17 17 C 1.50470 * 118.96858 * 179.72908 * 10 9 8 18 18 C 1.41888 * 119.55996 * 359.46769 * 6 5 4 19 19 C 1.40901 * 120.29549 * 180.29877 * 18 6 5 20 20 H 1.08004 * 120.00037 * 334.04730 * 19 18 6 21 21 C 1.40042 * 120.00058 * 154.05318 * 19 18 6 22 22 N 1.30789 * 120.00141 * 344.16116 * 21 19 18 23 23 Si 1.86800 * 120.00217 * 164.16683 * 21 19 18 24 24 H 1.48500 * 109.47214 * 89.99555 * 23 21 19 25 25 H 1.48504 * 109.47254 * 209.99670 * 23 21 19 26 26 H 1.48502 * 109.47076 * 329.99354 * 23 21 19 27 27 C 1.37931 * 119.78275 * 180.02562 * 3 2 1 28 28 H 1.08992 * 109.47561 * 300.00184 * 1 2 3 29 29 H 1.08996 * 109.47398 * 60.00595 * 1 2 3 30 30 H 1.09007 * 109.47015 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.68806 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.91577 * 180.28340 * 5 4 3 33 33 H 1.07990 * 119.83997 * 0.09824 * 8 7 6 34 34 H 1.08003 * 119.70644 * 180.02562 * 9 8 7 35 35 H 1.07998 * 120.16862 * 359.97438 * 12 7 6 36 36 H 1.08998 * 109.88701 * 161.72764 * 15 13 11 37 37 H 1.09008 * 109.87953 * 282.80344 * 15 13 11 38 38 H 1.08991 * 109.52190 * 176.10927 * 16 15 13 39 39 H 1.09005 * 109.33939 * 56.13516 * 16 15 13 40 40 H 1.08999 * 109.11646 * 278.02646 * 17 10 9 41 41 H 1.08997 * 109.11773 * 37.16125 * 17 10 9 42 42 H 0.96998 * 120.00455 * 180.02562 * 22 21 19 43 43 H 1.07999 * 120.09460 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2817 2.3774 0.0005 5 6 1.8900 3.6156 0.0059 6 6 3.2782 3.7128 -0.0001 7 6 3.9313 5.0393 -0.0002 8 6 4.9389 5.3269 0.9254 9 6 5.5484 6.5639 0.9294 10 6 5.1731 7.5377 0.0186 11 6 4.1694 7.2583 -0.9128 12 6 3.5461 6.0101 -0.9228 13 6 3.7627 8.2844 -1.8932 14 8 3.0481 8.0066 -2.8327 15 6 4.2745 9.6951 -1.6878 16 6 5.7469 9.5972 -1.2811 17 6 5.8582 8.8768 0.0597 18 6 4.0626 2.5305 -0.0003 19 6 5.4694 2.6108 0.0000 20 1 5.9606 3.4814 -0.4090 21 6 6.2305 1.5618 0.5305 22 7 5.6640 0.6639 1.2943 23 14 8.0551 1.4450 0.1474 24 1 8.8252 2.1925 1.1737 25 1 8.4725 0.0199 0.1559 26 1 8.3180 2.0297 -1.1921 27 6 3.4235 1.2777 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2038 2.3109 0.0014 32 1 1.2874 4.5118 0.0109 33 1 5.2412 4.5767 1.6410 34 1 6.3259 6.7751 1.6487 35 1 2.7689 5.7973 -1.6420 36 1 4.1834 10.2612 -2.6148 37 1 3.7063 10.1841 -0.8965 38 1 6.1675 10.5987 -1.1917 39 1 6.2948 9.0391 -2.0404 40 1 5.3970 9.4901 0.8338 41 1 6.9114 8.7317 0.2996 42 1 6.1912 -0.0625 1.6620 43 1 4.0097 0.3707 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242857005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:35 Heat of formation + Delta-G solvation = -63.777602 kcal Electronic energy + Delta-G solvation = -26301.847485 eV Core-core repulsion = 22661.296366 eV Total energy + Delta-G solvation = -3640.551118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.37425 -40.51875 -39.30614 -38.08473 -36.26926 -35.43998 -32.60890 -32.11678 -31.48932 -30.04576 -28.92548 -27.51856 -27.02653 -24.42595 -23.94057 -22.87647 -22.25121 -21.80064 -19.72017 -19.54612 -18.00372 -17.72162 -17.07325 -16.87809 -16.57280 -16.38512 -16.33085 -15.82694 -15.72592 -15.37498 -14.93894 -14.63258 -14.61686 -14.48780 -14.25862 -13.89646 -13.66385 -13.54844 -13.14797 -12.88508 -12.85338 -12.74934 -12.60352 -12.50185 -12.27454 -12.03690 -11.92756 -11.70261 -11.68025 -11.53704 -11.35607 -11.02135 -10.51232 -9.84445 -9.55525 -9.43157 -8.77599 -8.43834 -6.38759 -0.20145 0.33628 0.93405 1.10541 1.36919 1.47196 1.51958 1.54106 2.17494 2.65549 2.73886 2.91055 3.11925 3.65914 3.77955 3.86734 4.01135 4.13708 4.17193 4.29714 4.32530 4.42874 4.45988 4.47233 4.51441 4.55779 4.67366 4.70626 4.81541 4.94039 4.99474 5.02485 5.06007 5.12820 5.14600 5.25034 5.28487 5.35926 5.45034 5.50042 5.59031 5.76176 5.85180 5.89456 6.03334 6.12822 6.16677 6.44474 6.54106 6.84672 6.88332 6.99872 8.27620 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010963 B = 0.004550 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.477691 B = 6152.194201 C = 8167.808687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.129 3.871 4 C -0.316 4.316 5 C -0.049 4.049 6 C -0.217 4.217 7 C -0.020 4.020 8 C -0.074 4.074 9 C -0.135 4.135 10 C -0.039 4.039 11 C -0.191 4.191 12 C -0.087 4.087 13 C 0.397 3.603 14 O -0.506 6.506 15 C -0.154 4.154 16 C -0.109 4.109 17 C -0.082 4.082 18 C 0.130 3.870 19 C -0.467 4.467 20 H 0.081 0.919 21 C 0.040 3.960 22 N -0.812 5.812 23 Si 0.973 3.027 24 H -0.253 1.253 25 H -0.268 1.268 26 H -0.262 1.262 27 C -0.228 4.228 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.057 0.943 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.290 0.710 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 14.153 0.929 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.264 6.264 3 C 0.085 3.915 4 C -0.336 4.336 5 C -0.067 4.067 6 C -0.219 4.219 7 C -0.020 4.020 8 C -0.092 4.092 9 C -0.152 4.152 10 C -0.040 4.040 11 C -0.192 4.192 12 C -0.106 4.106 13 C 0.278 3.722 14 O -0.385 6.385 15 C -0.191 4.191 16 C -0.146 4.146 17 C -0.118 4.118 18 C 0.127 3.873 19 C -0.495 4.495 20 H 0.099 0.901 21 C -0.177 4.177 22 N -0.436 5.436 23 Si 0.793 3.207 24 H -0.177 1.177 25 H -0.193 1.193 26 H -0.186 1.186 27 C -0.249 4.249 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.173 0.827 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.142 0.858 38 H 0.134 0.866 39 H 0.076 0.924 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.503 13.609 0.602 13.705 hybrid contribution -0.019 -1.107 -0.108 1.113 sum 1.483 12.502 0.494 12.600 Atomic orbital electron populations 1.23149 0.77604 1.04603 1.01454 1.85968 1.22795 1.28217 1.89457 1.19112 0.92242 0.83845 0.96300 1.20660 0.98794 0.91754 1.22363 1.20659 0.93303 0.96271 0.96462 1.18868 0.92802 0.91860 1.18344 1.18703 0.96119 0.92184 0.95020 1.21602 0.94030 0.96772 0.96840 1.21308 1.01370 0.92216 1.00341 1.20428 0.93891 0.97228 0.92413 1.20363 1.01953 0.95491 1.01350 1.21451 0.99314 0.92775 0.97014 1.23500 0.75321 0.92246 0.81094 1.90492 1.32261 1.84900 1.30849 1.22286 0.99075 0.92105 1.05608 1.21474 0.93601 1.03064 0.96454 1.20602 1.01543 0.90489 0.99176 1.17543 0.93681 0.89480 0.86559 1.19644 0.91072 1.03863 1.34943 0.90058 1.26764 1.05581 0.93442 0.91953 1.69880 1.40382 1.11392 1.21974 0.85330 0.76416 0.78797 0.80111 1.17664 1.19286 1.18621 1.20502 0.90496 0.98637 1.15228 0.92744 0.92598 0.86435 0.85614 0.86944 0.86764 0.82711 0.87712 0.87969 0.85757 0.86589 0.92420 0.87481 0.88105 0.89943 0.87714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.80 113.37 1.11 1.94 16 2 O -0.35 -15.70 10.48 -92.18 -0.97 -16.67 16 3 C 0.13 6.50 6.67 22.49 0.15 6.65 16 4 C -0.32 -14.42 9.02 22.50 0.20 -14.21 16 5 C -0.05 -2.26 9.49 22.42 0.21 -2.05 16 6 C -0.22 -10.83 5.53 -19.61 -0.11 -10.94 16 7 C -0.02 -0.89 4.91 -20.08 -0.10 -0.99 16 8 C -0.07 -2.91 7.96 22.57 0.18 -2.73 16 9 C -0.13 -3.98 9.63 22.26 0.21 -3.76 16 10 C -0.04 -1.04 5.79 -19.50 -0.11 -1.16 16 11 C -0.19 -6.32 5.81 -20.12 -0.12 -6.43 16 12 C -0.09 -3.55 9.08 22.85 0.21 -3.34 16 13 C 0.40 11.90 6.90 28.41 0.20 12.10 16 14 O -0.51 -19.21 17.25 -2.96 -0.05 -19.26 16 15 C -0.15 -2.68 6.16 30.11 0.19 -2.49 16 16 C -0.11 -1.47 5.88 30.49 0.18 -1.29 16 17 C -0.08 -1.25 5.70 29.65 0.17 -1.08 16 18 C 0.13 7.09 5.56 -21.14 -0.12 6.98 16 19 C -0.47 -24.49 7.13 23.36 0.17 -24.33 16 20 H 0.08 4.18 6.58 -2.91 -0.02 4.16 16 21 C 0.04 1.95 5.17 85.29 0.44 2.39 16 22 N -0.81 -42.18 10.93 21.84 0.24 -41.94 16 23 Si 0.97 37.50 29.59 68.60 2.03 39.53 16 24 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 25 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 26 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 27 C -0.23 -12.71 8.59 22.78 0.20 -12.51 16 28 H 0.05 1.60 7.64 -2.39 -0.02 1.58 16 29 H 0.06 1.63 7.65 -2.39 -0.02 1.61 16 30 H 0.12 2.83 8.14 -2.38 -0.02 2.81 16 31 H 0.13 4.86 6.25 -2.91 -0.02 4.84 16 32 H 0.11 4.65 8.04 -2.91 -0.02 4.63 16 33 H 0.11 4.88 7.29 -2.92 -0.02 4.86 16 34 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.10 4.55 7.70 -2.91 -0.02 4.52 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.94 8.14 -2.38 -0.02 0.93 16 40 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 1.21 8.10 -2.39 -0.02 1.19 16 42 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 43 H 0.10 6.18 6.19 -2.91 -0.02 6.16 16 Total: -1.00 -69.56 355.00 5.54 -64.02 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 1.03 Total: 31.58 kcal Atomic # 6 Polarization: -60.51 SS G_CDS: 3.26 Total: -57.26 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.24 Total: -41.94 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -1.02 Total: -35.93 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -69.56 5.54 -64.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242857005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.243 kcal (2) G-P(sol) polarization free energy of solvation -69.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds