Wall clock time and date at job start Tue Mar 31 2020 13:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39606 * 120.43673 * 67.16491 * 3 2 1 5 5 C 1.37649 * 120.21180 * 180.02562 * 4 3 2 6 6 C 1.40010 * 121.15154 * 359.97438 * 5 4 3 7 7 C 1.47716 * 119.55903 * 179.97438 * 6 5 4 8 8 C 1.31191 * 117.81380 * 244.76256 * 7 6 5 9 9 C 1.50349 * 123.42374 * 180.54581 * 8 7 6 10 10 N 1.46988 * 109.19000 * 349.44129 * 9 8 7 11 11 C 1.34780 * 121.33167 * 223.02527 * 10 9 8 12 12 O 1.21281 * 120.00261 * 180.02562 * 11 10 9 13 13 C 1.50698 * 120.00126 * 0.02866 * 11 10 9 14 14 C 1.53005 * 117.49647 * 248.74771 * 13 11 10 15 15 C 1.53002 * 117.50247 * 180.08802 * 13 11 10 16 16 C 1.47310 * 117.33619 * 43.04667 * 10 9 8 17 17 C 1.49991 * 117.81517 * 65.02951 * 7 6 5 18 18 C 1.38818 * 120.87901 * 0.02562 * 6 5 4 19 19 C 1.40556 * 119.71764 * 359.97438 * 18 6 5 20 20 C 1.40845 * 120.54655 * 179.72902 * 19 18 6 21 21 H 1.07995 * 120.00502 * 204.55140 * 20 19 18 22 22 C 1.40239 * 119.99980 * 24.54627 * 20 19 18 23 23 N 1.30660 * 119.99790 * 17.47423 * 22 20 19 24 24 Si 1.86799 * 119.99915 * 197.47415 * 22 20 19 25 25 H 1.48502 * 109.47203 * 90.00298 * 24 22 20 26 26 H 1.48503 * 109.47080 * 209.99980 * 24 22 20 27 27 H 1.48494 * 109.47203 * 330.00228 * 24 22 20 28 28 H 1.08003 * 119.89494 * 0.02562 * 4 3 2 29 29 H 1.08000 * 119.42926 * 179.97438 * 5 4 3 30 30 H 1.07999 * 118.29261 * 0.80424 * 8 7 6 31 31 H 1.09003 * 109.67654 * 229.42203 * 9 8 7 32 32 H 1.09001 * 109.38397 * 109.28393 * 9 8 7 33 33 H 1.09008 * 115.55248 * 34.41152 * 13 11 10 34 34 H 1.09000 * 117.49538 * 359.97438 * 14 13 11 35 35 H 1.08994 * 117.49881 * 145.02028 * 14 13 11 36 36 H 1.08997 * 117.49592 * 214.97879 * 15 13 11 37 37 H 1.09001 * 117.49253 * 359.96588 * 15 13 11 38 38 H 1.08995 * 109.76576 * 178.09364 * 16 10 9 39 39 H 1.09006 * 109.80246 * 57.35320 * 16 10 9 40 40 H 1.09003 * 109.31333 * 281.29610 * 17 7 6 41 41 H 1.09005 * 109.31075 * 40.90664 * 17 7 6 42 42 H 1.08007 * 120.14004 * 179.97438 * 18 6 5 43 43 H 0.96998 * 119.99619 * 184.65465 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2754 -0.4662 -1.1093 5 6 4.6519 -0.4639 -1.1041 6 6 5.3713 0.0025 0.0028 7 6 6.8480 -0.0116 -0.0293 8 6 7.4713 -0.7925 0.8210 9 6 8.9688 -0.8960 0.9059 10 7 9.5669 -0.2067 -0.2464 11 6 10.5976 -0.7453 -0.9276 12 8 11.0731 -0.1553 -1.8746 13 6 11.1593 -2.0807 -0.5128 14 6 12.5661 -2.0993 0.0886 15 6 12.3304 -2.6377 -1.3248 16 6 8.9951 1.0966 -0.6265 17 6 7.5349 0.8723 -1.0276 18 6 4.7152 0.4770 1.1304 19 6 3.3101 0.4913 1.1646 20 6 2.6266 0.9637 2.3018 21 1 1.6207 0.6277 2.5056 22 6 3.2523 1.8703 3.1697 23 7 4.3032 2.5368 2.7715 24 14 2.5831 2.1252 4.8950 25 1 3.2347 1.1682 5.8251 26 1 2.8668 3.5147 5.3357 27 1 1.1161 1.8954 4.8960 28 1 2.7410 -0.8302 -1.9744 29 1 5.1864 -0.8283 -1.9690 30 1 6.8778 -1.3954 1.4922 31 1 9.2653 -1.9449 0.8970 32 1 9.3121 -0.4282 1.8286 33 1 10.4347 -2.7941 -0.1202 34 1 13.0854 -1.1457 0.1838 35 1 12.7671 -2.8252 0.8765 36 1 12.3762 -3.7175 -1.4662 37 1 12.6941 -2.0384 -2.1595 38 1 9.5493 1.5108 -1.4687 39 1 9.0438 1.7822 0.2196 40 1 7.4991 0.4021 -2.0103 41 1 7.0235 1.8341 -1.0693 42 1 5.2820 0.8336 1.9777 43 1 4.7762 3.1127 3.3923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243027714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:02 Heat of formation + Delta-G solvation = 34.637425 kcal Electronic energy + Delta-G solvation = -25718.715041 eV Core-core repulsion = 22114.724270 eV Total energy + Delta-G solvation = -3603.990771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34047 -39.81161 -38.50607 -37.05898 -36.85287 -35.88904 -34.39755 -32.20212 -31.69104 -30.85264 -27.52229 -27.13377 -25.55284 -24.03218 -23.26334 -23.01172 -22.76035 -20.64412 -19.51710 -19.04190 -18.81268 -17.92976 -17.13562 -16.89623 -16.52624 -16.06882 -15.79719 -15.44194 -15.09317 -15.04913 -14.93350 -14.55865 -14.49603 -14.34747 -14.08360 -13.65973 -13.49066 -13.40487 -13.40094 -13.18316 -13.08723 -12.78683 -12.60268 -12.39690 -12.32837 -12.26684 -11.99371 -11.52440 -11.48315 -11.39353 -11.36491 -11.14155 -10.84745 -9.87729 -9.66407 -9.50183 -9.07795 -8.80366 -6.52225 0.28748 1.01762 1.29879 1.37319 1.48030 1.48628 1.52748 1.95486 2.03728 2.14549 2.35532 2.67124 2.96146 3.49138 3.58960 3.66567 3.81571 3.89285 4.03702 4.04476 4.11618 4.18625 4.31391 4.39811 4.42685 4.64437 4.70012 4.76687 4.79165 4.83357 4.91096 4.96082 4.98571 5.04130 5.09248 5.14889 5.24405 5.27862 5.42859 5.47439 5.56902 5.82427 5.93925 6.00265 6.10958 6.18789 6.44910 6.47847 6.67464 6.80553 6.97396 7.14254 8.09441 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.003132 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.510913 B = 8937.161309 C =10032.510299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C 0.304 3.696 3 C -0.214 4.214 4 C -0.028 4.028 5 C -0.229 4.229 6 C -0.015 4.015 7 C -0.070 4.070 8 C -0.171 4.171 9 C 0.148 3.852 10 N -0.607 5.607 11 C 0.540 3.460 12 O -0.590 6.590 13 C -0.204 4.204 14 C -0.136 4.136 15 C -0.153 4.153 16 C 0.116 3.884 17 C -0.085 4.085 18 C -0.161 4.161 19 C 0.131 3.869 20 C -0.466 4.466 21 H 0.065 0.935 22 C 0.049 3.951 23 N -0.782 5.782 24 Si 0.973 3.027 25 H -0.249 1.249 26 H -0.261 1.261 27 H -0.273 1.273 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.440 -6.965 1.162 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.214 5.214 2 C -0.004 4.004 3 C -0.220 4.220 4 C -0.048 4.048 5 C -0.248 4.248 6 C -0.016 4.016 7 C -0.070 4.070 8 C -0.190 4.190 9 C 0.027 3.973 10 N -0.339 5.339 11 C 0.331 3.669 12 O -0.471 6.471 13 C -0.225 4.225 14 C -0.173 4.173 15 C -0.191 4.191 16 C -0.007 4.007 17 C -0.123 4.123 18 C -0.180 4.180 19 C 0.126 3.874 20 C -0.494 4.494 21 H 0.083 0.917 22 C -0.172 4.172 23 N -0.405 5.405 24 Si 0.793 3.207 25 H -0.173 1.173 26 H -0.185 1.185 27 H -0.198 1.198 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.115 0.885 33 H 0.167 0.833 34 H 0.106 0.894 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.138 0.862 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 17.063 -6.405 0.711 18.239 hybrid contribution -0.709 0.554 0.501 1.030 sum 16.354 -5.851 1.212 17.411 Atomic orbital electron populations 1.80987 1.13287 1.15709 1.11434 1.26086 0.93051 0.90539 0.90729 1.17225 0.82862 1.23135 0.98777 1.20646 0.94251 0.95113 0.94802 1.20444 0.92649 1.12122 0.99610 1.19042 0.92644 0.96157 0.93733 1.19627 0.91524 0.98023 0.97852 1.22765 0.96144 1.00447 0.99644 1.20773 0.88915 0.99461 0.88139 1.48214 1.32875 1.20998 1.31801 1.20240 0.78762 0.86821 0.81097 1.90648 1.61718 1.64501 1.30260 1.22306 0.94431 0.95795 1.09927 1.23045 0.93127 1.03683 0.97432 1.23028 0.98560 1.02254 0.95239 1.21623 0.92544 0.84880 1.01640 1.20586 0.94505 0.99552 0.97619 1.21320 0.92764 1.05465 0.98419 1.18651 0.92409 0.87041 0.89272 1.19831 1.01379 1.21580 1.06600 0.91682 1.26648 0.94581 0.92354 1.03569 1.69710 1.15825 1.17437 1.37553 0.85319 0.79344 0.79266 0.76759 1.17282 1.18477 1.19760 0.86145 0.86268 0.86180 0.86089 0.88541 0.83329 0.89392 0.84799 0.85567 0.89754 0.89610 0.89969 0.90864 0.90189 0.86156 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.44 18.54 19.00 0.35 -26.09 16 2 C 0.30 14.66 14.28 88.33 1.26 15.92 16 3 C -0.21 -9.86 5.95 -19.53 -0.12 -9.98 16 4 C -0.03 -1.09 9.74 22.46 0.22 -0.87 16 5 C -0.23 -8.45 9.63 22.56 0.22 -8.23 16 6 C -0.01 -0.55 5.07 -20.20 -0.10 -0.66 16 7 C -0.07 -2.13 5.24 -17.81 -0.09 -2.23 16 8 C -0.17 -4.35 9.43 25.35 0.24 -4.11 16 9 C 0.15 2.72 6.49 85.43 0.55 3.27 16 10 N -0.61 -13.92 2.96 -823.31 -2.44 -16.36 16 11 C 0.54 13.29 7.51 87.66 0.66 13.94 16 12 O -0.59 -19.19 15.74 -3.03 -0.05 -19.24 16 13 C -0.20 -3.28 5.26 -11.54 -0.06 -3.34 16 14 C -0.14 -1.65 10.24 30.62 0.31 -1.34 16 15 C -0.15 -2.25 10.05 30.62 0.31 -1.95 16 16 C 0.12 2.88 6.49 86.25 0.56 3.44 16 17 C -0.08 -2.36 5.89 29.65 0.17 -2.19 16 18 C -0.16 -7.03 8.26 22.97 0.19 -6.84 16 19 C 0.13 6.35 5.73 -19.91 -0.11 6.24 16 20 C -0.47 -23.17 8.58 23.39 0.20 -22.97 16 21 H 0.06 3.38 7.37 -2.91 -0.02 3.35 16 22 C 0.05 2.22 5.16 85.35 0.44 2.66 16 23 N -0.78 -34.95 10.94 21.88 0.24 -34.71 16 24 Si 0.97 34.69 29.60 68.60 2.03 36.72 16 25 H -0.25 -8.30 7.11 99.48 0.71 -7.60 16 26 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 27 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 28 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 30 H 0.12 3.12 7.94 -2.91 -0.02 3.09 16 31 H 0.12 1.52 5.74 -2.39 -0.01 1.51 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.15 1.68 6.51 -2.38 -0.02 1.67 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.64 7.67 -2.39 -0.02 1.62 16 38 H 0.09 2.27 7.07 -2.39 -0.02 2.26 16 39 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.08 2.33 8.13 -2.38 -0.02 2.31 16 42 H 0.12 5.40 6.16 -2.91 -0.02 5.38 16 43 H 0.30 11.87 8.30 -92.71 -0.77 11.10 16 Total: -1.00 -61.19 367.94 6.02 -55.16 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 1.04 Total: 23.74 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 4.85 Total: -19.23 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -1.85 Total: -77.16 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.05 Total: -19.24 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Total: -61.19 6.02 -55.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243027714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.801 kcal (2) G-P(sol) polarization free energy of solvation -61.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds