Wall clock time and date at job start Tue Mar 31 2020 13:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47499 * 274.51591 * 3 2 1 5 5 H 1.48498 * 109.46920 * 34.51915 * 3 2 1 6 6 H 1.48503 * 109.46747 * 154.51501 * 3 2 1 7 7 C 1.39900 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99997 * 197.96732 * 7 2 1 9 9 C 1.41214 * 119.99897 * 17.95935 * 7 2 1 10 10 C 1.40839 * 120.17523 * 25.16786 * 9 7 2 11 11 C 1.36436 * 119.80658 * 180.22651 * 10 9 7 12 12 C 1.39314 * 120.18679 * 359.49986 * 11 10 9 13 13 O 1.35675 * 119.81564 * 180.27303 * 12 11 10 14 14 C 1.42911 * 116.99567 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46845 * 180.02562 * 14 13 12 16 16 C 1.38818 * 120.30262 * 89.99941 * 15 14 13 17 17 C 1.38349 * 118.53234 * 180.02562 * 16 15 14 18 18 C 1.39536 * 119.04815 * 0.02562 * 17 16 15 19 19 C 1.47757 * 119.74345 * 179.97438 * 18 17 16 20 20 C 1.32641 * 125.40698 * 0.02969 * 19 18 17 21 21 C 1.51142 * 109.17860 * 179.97438 * 20 19 18 22 22 N 1.48184 * 105.43816 * 17.10461 * 21 20 19 23 23 C 1.48348 * 102.93436 * 333.29040 * 22 21 20 24 24 N 1.32796 * 120.51132 * 359.97438 * 18 17 16 25 25 C 1.31748 * 121.59207 * 359.74767 * 24 18 17 26 26 C 1.39309 * 120.36327 * 0.25973 * 12 11 10 27 27 C 1.36433 * 120.18865 * 359.97438 * 26 12 11 28 28 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.09828 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.90941 * 179.77759 * 11 10 9 31 31 H 1.08998 * 109.46572 * 299.99899 * 14 13 12 32 32 H 1.08997 * 109.46840 * 60.00516 * 14 13 12 33 33 H 1.08003 * 120.73124 * 0.02562 * 16 15 14 34 34 H 1.07995 * 120.47236 * 179.97438 * 17 16 15 35 35 H 1.07998 * 125.41113 * 359.97438 * 20 19 18 36 36 H 1.08997 * 110.25469 * 136.09877 * 21 20 19 37 37 H 1.08999 * 110.25365 * 258.02257 * 21 20 19 38 38 H 1.00908 * 110.99672 * 214.63424 * 22 21 20 39 39 H 1.08999 * 110.39544 * 267.80694 * 23 22 21 40 40 H 1.08993 * 110.18893 * 145.73619 * 23 22 21 41 41 H 1.07999 * 119.54014 * 180.26302 * 25 24 18 42 42 H 1.08003 * 119.90956 * 180.02562 * 26 12 11 43 43 H 1.08001 * 120.10139 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3949 2.1016 -1.3957 5 1 1.4913 2.6232 0.7934 6 1 3.5849 1.4143 0.6024 7 6 2.0083 -1.2116 -0.0005 8 1 3.0487 -1.2345 0.2880 9 6 1.3538 -2.4045 -0.3782 10 6 0.2329 -2.3580 -1.2296 11 6 -0.3966 -3.5149 -1.5860 12 6 0.0728 -4.7404 -1.1185 13 8 -0.5555 -5.8866 -1.4820 14 6 -0.0238 -7.1092 -0.9673 15 6 -0.8444 -8.2668 -1.4749 16 6 -0.5078 -8.8949 -2.6663 17 6 -1.2866 -9.9535 -3.0983 18 6 -2.3784 -10.3510 -2.3256 19 6 -3.2209 -11.4795 -2.7727 20 6 -3.0368 -12.1838 -3.8815 21 6 -4.1071 -13.2467 -3.9780 22 7 -5.1696 -12.8232 -3.0360 23 6 -4.4256 -12.0185 -2.0362 24 7 -2.6660 -9.7229 -1.1915 25 6 -1.9367 -8.7158 -0.7561 26 6 1.1839 -4.7955 -0.2800 27 6 1.8220 -3.6476 0.0897 28 1 -0.4850 0.8401 0.0004 29 1 -0.1294 -1.4092 -1.5968 30 1 -1.2585 -3.4809 -2.2359 31 1 1.0086 -7.2238 -1.2974 32 1 -0.0572 -7.0898 0.1219 33 1 0.3433 -8.5643 -3.2432 34 1 -1.0534 -10.4644 -4.0207 35 1 -2.2475 -12.0234 -4.6010 36 1 -4.5003 -13.2950 -4.9934 37 1 -3.7042 -14.2157 -3.6835 38 1 -5.6067 -13.6220 -2.6010 39 1 -4.1089 -12.6460 -1.2031 40 1 -5.0463 -11.1979 -1.6766 41 1 -2.1983 -8.2316 0.1732 42 1 1.5419 -5.7496 0.0778 43 1 2.6835 -3.6920 0.7395 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243109727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:15 Heat of formation + Delta-G solvation = 46.097243 kcal Electronic energy + Delta-G solvation = -24504.528083 eV Core-core repulsion = 20901.034246 eV Total energy + Delta-G solvation = -3603.493836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.58047 -39.13266 -38.60662 -36.47009 -33.66436 -33.05629 -32.62184 -30.38650 -29.69147 -29.07107 -28.73906 -26.32067 -24.70430 -24.00965 -22.70635 -21.84880 -20.84260 -20.59619 -19.36681 -17.67105 -17.38282 -17.05909 -16.68634 -16.07434 -15.64357 -15.17343 -15.02402 -14.60562 -14.24675 -14.10303 -13.95622 -13.61641 -13.33708 -13.17087 -12.95092 -12.63990 -12.48312 -12.29086 -12.16282 -12.04644 -11.85164 -11.50276 -11.38419 -11.12451 -10.84956 -10.71777 -10.49877 -10.05134 -9.95225 -9.84556 -9.60044 -9.38857 -9.12936 -9.04828 -8.35402 -7.67560 -7.06606 -6.74758 -4.28222 0.43683 1.13126 1.98108 2.75100 2.92275 3.07728 3.11251 3.19034 3.61010 3.74161 3.93712 4.05672 4.14295 4.26050 4.45421 4.58987 4.75456 4.80352 4.82863 4.93173 5.03166 5.13578 5.15023 5.27678 5.36623 5.54592 5.60838 5.62613 5.67849 5.77734 6.02382 6.03551 6.07028 6.15363 6.19496 6.35035 6.51565 6.68452 6.81286 6.95030 7.08336 7.15783 7.42567 7.52657 7.75471 7.78444 7.98131 8.17336 8.40657 8.62064 8.87505 8.95581 10.20047 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.042411 B = 0.001830 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.050191 B =15294.230941 C =15465.479887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.134 4.134 11 C -0.118 4.118 12 C -0.011 4.011 13 O -0.322 6.322 14 C 0.111 3.889 15 C -0.131 4.131 16 C -0.052 4.052 17 C -0.162 4.162 18 C 0.172 3.828 19 C -0.085 4.085 20 C -0.146 4.146 21 C 0.059 3.941 22 N -0.660 5.660 23 C 0.076 3.924 24 N -0.476 5.476 25 C 0.127 3.873 26 C -0.166 4.166 27 C -0.198 4.198 28 H 0.280 0.720 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.343 0.657 39 H 0.057 0.943 40 H 0.095 0.905 41 H 0.162 0.838 42 H 0.094 0.906 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 -21.515 -5.536 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.153 4.153 11 C -0.137 4.137 12 C -0.054 4.054 13 O -0.238 6.238 14 C 0.034 3.966 15 C -0.133 4.133 16 C -0.077 4.077 17 C -0.182 4.182 18 C 0.036 3.964 19 C -0.087 4.087 20 C -0.167 4.167 21 C -0.070 4.070 22 N -0.289 5.289 23 C -0.053 4.053 24 N -0.184 5.184 25 C -0.031 4.031 26 C -0.185 4.185 27 C -0.217 4.217 28 H 0.091 0.909 29 H 0.142 0.858 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.158 0.842 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.179 0.821 42 H 0.112 0.888 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.631 -21.083 -5.531 22.512 hybrid contribution 1.849 0.407 0.254 1.910 sum -3.782 -20.677 -5.277 21.672 Atomic orbital electron populations 1.69836 1.07514 1.29172 1.35836 1.25887 0.94723 1.01250 0.92360 0.86311 0.80554 0.80786 0.79117 1.19381 1.20345 1.18651 1.19481 0.98132 0.91230 1.40508 0.90491 1.17611 0.91812 0.92158 0.89777 1.20959 0.98597 0.96252 0.99482 1.19832 1.00781 0.90213 1.02827 1.18570 0.97187 0.84543 1.05109 1.85906 1.55245 1.12038 1.70630 1.21151 0.95460 0.81943 0.98045 1.20810 0.98220 0.97755 0.96474 1.21492 0.98665 0.93321 0.94249 1.22000 0.96271 0.98707 1.01184 1.19372 0.92457 0.93691 0.90929 1.20524 0.96830 0.94787 0.96522 1.23966 0.99274 0.96291 0.97141 1.21807 0.90264 0.95826 0.99076 1.63972 1.25654 1.23633 1.15598 1.21596 0.92376 0.97879 0.93438 1.67776 1.29066 1.08055 1.13487 1.22713 0.89587 0.91589 0.99261 1.20407 0.97926 0.97841 1.02352 1.20563 1.03245 0.92488 1.05446 0.90889 0.85761 0.88497 0.91953 0.91740 0.84236 0.84677 0.84099 0.89190 0.92442 0.84204 0.92482 0.88724 0.82124 0.88753 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.57 11.00 55.55 0.61 -19.96 16 2 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 3 Si 0.91 18.57 29.60 -169.99 -5.03 13.54 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.46 -12.19 9.04 -37.83 -0.34 -12.54 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.09 2.35 5.57 -106.80 -0.59 1.75 16 10 C -0.13 -3.46 8.64 -39.25 -0.34 -3.80 16 11 C -0.12 -2.83 9.92 -39.83 -0.40 -3.22 16 12 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 13 O -0.32 -6.42 10.11 -18.73 -0.19 -6.61 16 14 C 0.11 1.68 4.88 36.00 0.18 1.86 16 15 C -0.13 -1.77 5.53 -104.40 -0.58 -2.35 16 16 C -0.05 -0.61 9.84 -39.33 -0.39 -1.00 16 17 C -0.16 -1.75 9.57 -39.06 -0.37 -2.13 16 18 C 0.17 2.10 6.74 -83.08 -0.56 1.54 16 19 C -0.09 -0.89 6.19 -102.41 -0.63 -1.52 16 20 C -0.15 -1.19 10.35 -35.99 -0.37 -1.56 16 21 C 0.06 0.41 7.47 -4.05 -0.03 0.38 16 22 N -0.66 -5.43 7.80 -113.75 -0.89 -6.32 16 23 C 0.08 0.73 7.23 -3.96 -0.03 0.70 16 24 N -0.48 -6.50 10.11 -9.87 -0.10 -6.60 16 25 C 0.13 1.70 10.85 -17.58 -0.19 1.51 16 26 C -0.17 -3.66 8.96 -39.83 -0.36 -4.02 16 27 C -0.20 -4.77 9.74 -39.25 -0.38 -5.16 16 28 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 29 H 0.12 3.30 6.21 -52.49 -0.33 2.97 16 30 H 0.10 2.17 8.06 -52.48 -0.42 1.74 16 31 H 0.06 0.88 7.60 -51.93 -0.39 0.49 16 32 H 0.06 0.93 7.60 -51.93 -0.39 0.54 16 33 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.14 1.06 6.84 -52.49 -0.36 0.71 16 35 H 0.14 0.86 7.04 -52.49 -0.37 0.49 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.34 2.02 8.91 -39.29 -0.35 1.66 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.09 1.77 6.27 -52.48 -0.33 1.44 16 43 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 363.77 15.07 5.48 5.48 Total: -1.00 -29.85 363.77 -11.31 -41.16 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.45 Total: 7.58 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -5.74 Total: -28.28 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: -0.38 Total: -32.87 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.19 Total: -6.61 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.85 -11.31 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243109727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.256 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds