Wall clock time and date at job start Tue Mar 31 2020 13:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 120.00237 * 2 1 4 4 H 1.48497 * 109.47499 * 274.51591 * 3 2 1 5 5 H 1.48498 * 109.46920 * 34.51915 * 3 2 1 6 6 H 1.48503 * 109.46747 * 154.51501 * 3 2 1 7 7 C 1.39900 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99997 * 197.96732 * 7 2 1 9 9 C 1.41214 * 119.99897 * 17.95935 * 7 2 1 10 10 C 1.40839 * 120.17523 * 25.16786 * 9 7 2 11 11 C 1.36436 * 119.80658 * 180.22651 * 10 9 7 12 12 C 1.39314 * 120.18679 * 359.49986 * 11 10 9 13 13 O 1.35675 * 119.81564 * 180.27303 * 12 11 10 14 14 C 1.42911 * 116.99567 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46845 * 180.02562 * 14 13 12 16 16 C 1.38818 * 120.30262 * 89.99941 * 15 14 13 17 17 C 1.38349 * 118.53234 * 180.02562 * 16 15 14 18 18 C 1.39536 * 119.04815 * 0.02562 * 17 16 15 19 19 C 1.47757 * 119.74345 * 179.97438 * 18 17 16 20 20 C 1.32641 * 125.40698 * 0.02969 * 19 18 17 21 21 C 1.51142 * 109.17860 * 179.97438 * 20 19 18 22 22 N 1.48184 * 105.43816 * 17.10461 * 21 20 19 23 23 C 1.48348 * 102.93436 * 333.29040 * 22 21 20 24 24 N 1.32796 * 120.51132 * 359.97438 * 18 17 16 25 25 C 1.31748 * 121.59207 * 359.74767 * 24 18 17 26 26 C 1.39309 * 120.36327 * 0.25973 * 12 11 10 27 27 C 1.36433 * 120.18865 * 359.97438 * 26 12 11 28 28 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.09828 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.90941 * 179.77759 * 11 10 9 31 31 H 1.08998 * 109.46572 * 299.99899 * 14 13 12 32 32 H 1.08997 * 109.46840 * 60.00516 * 14 13 12 33 33 H 1.08003 * 120.73124 * 0.02562 * 16 15 14 34 34 H 1.07995 * 120.47236 * 179.97438 * 17 16 15 35 35 H 1.07998 * 125.41113 * 359.97438 * 20 19 18 36 36 H 1.08997 * 110.25469 * 136.09877 * 21 20 19 37 37 H 1.08999 * 110.25365 * 258.02257 * 21 20 19 38 38 H 1.00908 * 110.99672 * 214.63424 * 22 21 20 39 39 H 1.08999 * 110.39544 * 267.80694 * 23 22 21 40 40 H 1.08993 * 110.18893 * 145.73619 * 23 22 21 41 41 H 1.07999 * 119.54014 * 180.26302 * 25 24 18 42 42 H 1.08003 * 119.90956 * 180.02562 * 26 12 11 43 43 H 1.08001 * 120.10139 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3949 2.1016 -1.3957 5 1 1.4913 2.6232 0.7934 6 1 3.5849 1.4143 0.6024 7 6 2.0083 -1.2116 -0.0005 8 1 3.0487 -1.2345 0.2880 9 6 1.3538 -2.4045 -0.3782 10 6 0.2329 -2.3580 -1.2296 11 6 -0.3966 -3.5149 -1.5860 12 6 0.0728 -4.7404 -1.1185 13 8 -0.5555 -5.8866 -1.4820 14 6 -0.0238 -7.1092 -0.9673 15 6 -0.8444 -8.2668 -1.4749 16 6 -0.5078 -8.8949 -2.6663 17 6 -1.2866 -9.9535 -3.0983 18 6 -2.3784 -10.3510 -2.3256 19 6 -3.2209 -11.4795 -2.7727 20 6 -3.0368 -12.1838 -3.8815 21 6 -4.1071 -13.2467 -3.9780 22 7 -5.1696 -12.8232 -3.0360 23 6 -4.4256 -12.0185 -2.0362 24 7 -2.6660 -9.7229 -1.1915 25 6 -1.9367 -8.7158 -0.7561 26 6 1.1839 -4.7955 -0.2800 27 6 1.8220 -3.6476 0.0897 28 1 -0.4850 0.8401 0.0004 29 1 -0.1294 -1.4092 -1.5968 30 1 -1.2585 -3.4809 -2.2359 31 1 1.0086 -7.2238 -1.2974 32 1 -0.0572 -7.0898 0.1219 33 1 0.3433 -8.5643 -3.2432 34 1 -1.0534 -10.4644 -4.0207 35 1 -2.2475 -12.0234 -4.6010 36 1 -4.5003 -13.2950 -4.9934 37 1 -3.7042 -14.2157 -3.6835 38 1 -5.6067 -13.6220 -2.6010 39 1 -4.1089 -12.6460 -1.2031 40 1 -5.0463 -11.1979 -1.6766 41 1 -2.1983 -8.2316 0.1732 42 1 1.5419 -5.7496 0.0778 43 1 2.6835 -3.6920 0.7395 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243109727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:14 Heat of formation + Delta-G solvation = 28.597995 kcal Electronic energy + Delta-G solvation = -24505.286907 eV Core-core repulsion = 20901.034246 eV Total energy + Delta-G solvation = -3604.252661 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.49944 -40.46837 -39.61362 -38.17142 -35.30062 -34.25856 -33.48302 -31.77389 -31.09102 -30.71533 -29.51935 -27.49430 -26.45188 -24.88165 -23.86338 -22.63506 -22.52500 -22.27169 -20.11327 -19.25736 -18.71851 -18.35434 -17.66990 -17.15702 -16.90576 -16.55860 -15.99480 -15.82146 -15.74516 -15.49935 -15.06597 -14.73267 -14.36255 -14.25029 -14.07950 -14.01235 -13.84188 -13.58411 -13.25048 -13.14603 -13.06459 -12.85588 -12.75188 -12.50749 -12.41693 -12.34682 -11.74861 -11.60614 -11.37842 -11.15140 -10.89771 -10.86199 -10.52623 -9.88515 -9.55873 -9.07164 -8.92800 -8.59665 -6.22846 -0.42907 0.22718 0.94813 1.03066 1.19015 1.40184 1.52554 1.53606 2.23047 2.52990 2.72737 2.99403 3.04184 3.38978 3.45004 3.69414 3.73554 3.76653 3.86465 3.96517 4.12151 4.28114 4.32436 4.35499 4.42781 4.44268 4.51372 4.56957 4.58351 4.71148 4.86643 4.88277 4.99850 5.06921 5.20128 5.21992 5.28420 5.32253 5.39255 5.57697 5.61753 5.64432 5.69609 5.88621 6.06194 6.26427 6.31764 6.56128 6.79642 6.86799 6.95393 7.09295 8.37198 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.042411 B = 0.001830 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.050191 B =15294.230941 C =15465.479887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.033 3.967 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.499 4.499 8 H 0.077 0.923 9 C 0.054 3.946 10 C -0.153 4.153 11 C -0.133 4.133 12 C 0.002 3.998 13 O -0.333 6.333 14 C 0.107 3.893 15 C -0.150 4.150 16 C -0.052 4.052 17 C -0.160 4.160 18 C 0.166 3.834 19 C -0.127 4.127 20 C -0.116 4.116 21 C 0.054 3.946 22 N -0.672 5.672 23 C 0.080 3.920 24 N -0.501 5.501 25 C 0.115 3.885 26 C -0.163 4.163 27 C -0.206 4.206 28 H 0.287 0.713 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.355 0.645 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.164 0.836 42 H 0.132 0.868 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 -23.630 -6.841 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.529 4.529 8 H 0.095 0.905 9 C 0.052 3.948 10 C -0.172 4.172 11 C -0.152 4.152 12 C -0.042 4.042 13 O -0.250 6.250 14 C 0.032 3.968 15 C -0.152 4.152 16 C -0.077 4.077 17 C -0.179 4.179 18 C 0.030 3.970 19 C -0.128 4.128 20 C -0.136 4.136 21 C -0.074 4.074 22 N -0.302 5.302 23 C -0.049 4.049 24 N -0.209 5.209 25 C -0.042 4.042 26 C -0.182 4.182 27 C -0.225 4.225 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.176 0.824 34 H 0.186 0.814 35 H 0.184 0.816 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.171 0.829 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.182 0.818 42 H 0.149 0.851 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.870 -23.235 -6.832 24.704 hybrid contribution 1.487 0.739 0.565 1.754 sum -3.383 -22.496 -6.268 23.597 Atomic orbital electron populations 1.69896 1.08989 1.30435 1.36556 1.26743 0.95469 1.04509 0.91376 0.85193 0.79149 0.76073 0.79282 1.18834 1.19473 1.18113 1.19724 0.98387 0.92388 1.42356 0.90516 1.17971 0.92643 0.93434 0.90732 1.20870 0.99463 0.96321 1.00555 1.19990 1.01173 0.90675 1.03344 1.18616 0.96667 0.85163 1.03713 1.85898 1.55530 1.12673 1.70856 1.21401 0.96499 0.80301 0.98620 1.20697 0.98795 0.97870 0.97811 1.21775 0.99162 0.93203 0.93582 1.22317 0.95282 0.98320 1.02001 1.19827 0.92941 0.93738 0.90482 1.20577 0.98007 0.95989 0.98276 1.24433 0.98925 0.94572 0.95714 1.21977 0.89646 0.96326 0.99423 1.63933 1.26182 1.24444 1.15604 1.21451 0.92067 0.97445 0.93965 1.67789 1.29688 1.08677 1.14766 1.22836 0.89817 0.91902 0.99685 1.20720 0.97194 0.98801 1.01465 1.20811 1.03729 0.92504 1.05485 0.90250 0.87433 0.87623 0.90391 0.90963 0.82360 0.81366 0.81612 0.87816 0.90168 0.82881 0.92332 0.91178 0.81848 0.85055 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.20 11.00 21.82 0.24 -43.96 16 2 C 0.03 1.67 5.13 85.24 0.44 2.11 16 3 Si 0.98 38.49 29.60 68.60 2.03 40.52 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 5 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.50 -26.96 9.04 23.40 0.21 -26.75 16 8 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 9 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 10 C -0.15 -8.20 8.64 22.49 0.19 -8.00 16 11 C -0.13 -6.51 9.92 22.11 0.22 -6.29 16 12 C 0.00 0.09 6.71 22.79 0.15 0.25 16 13 O -0.33 -12.94 10.11 -89.92 -0.91 -13.85 16 14 C 0.11 3.09 4.88 71.24 0.35 3.44 16 15 C -0.15 -3.88 5.53 -19.72 -0.11 -3.99 16 16 C -0.05 -1.11 9.84 22.44 0.22 -0.89 16 17 C -0.16 -3.06 9.57 22.61 0.22 -2.84 16 18 C 0.17 3.86 6.74 41.83 0.28 4.15 16 19 C -0.13 -2.45 6.19 -18.37 -0.11 -2.56 16 20 C -0.12 -1.50 10.35 24.66 0.26 -1.25 16 21 C 0.05 0.57 7.47 85.45 0.64 1.21 16 22 N -0.67 -9.88 7.80 -513.78 -4.01 -13.89 16 23 C 0.08 1.49 7.23 85.42 0.62 2.11 16 24 N -0.50 -13.66 10.11 -185.16 -1.87 -15.53 16 25 C 0.12 3.09 10.85 84.71 0.92 4.01 16 26 C -0.16 -6.99 8.96 22.11 0.20 -6.79 16 27 C -0.21 -9.94 9.74 22.48 0.22 -9.72 16 28 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 29 H 0.11 6.02 6.21 -2.91 -0.02 6.00 16 30 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 31 H 0.08 2.01 7.60 -2.39 -0.02 1.99 16 32 H 0.07 1.96 7.60 -2.39 -0.02 1.95 16 33 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.17 1.95 6.84 -2.91 -0.02 1.93 16 35 H 0.17 1.23 7.04 -2.91 -0.02 1.21 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.35 3.58 8.91 -89.69 -0.80 2.78 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16 42 H 0.13 4.56 6.27 -2.91 -0.02 4.54 16 43 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -66.43 363.77 0.51 -65.92 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.24 Total: 29.77 kcal Atomic # 6 Polarization: -53.76 SS G_CDS: 4.79 Total: -48.97 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -5.64 Total: -73.38 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.91 Total: -13.85 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -66.43 0.51 -65.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243109727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.517 kcal (2) G-P(sol) polarization free energy of solvation -66.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds