Wall clock time and date at job start Tue Mar 31 2020 13:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31542 * 1 3 3 Si 1.86798 * 119.99932 * 2 1 4 4 H 1.48498 * 109.47201 * 269.99681 * 3 2 1 5 5 H 1.48497 * 109.47210 * 29.99991 * 3 2 1 6 6 H 1.48506 * 109.46897 * 149.99568 * 3 2 1 7 7 C 1.38665 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99663 * 185.04968 * 7 2 1 9 9 O 1.34816 * 120.00617 * 5.05218 * 7 2 1 10 10 C 1.35611 * 117.00207 * 174.88902 * 9 7 2 11 11 C 1.38790 * 120.14617 * 5.52588 * 10 9 7 12 12 C 1.38074 * 120.05454 * 179.97438 * 11 10 9 13 13 C 1.38487 * 120.34273 * 0.02562 * 12 11 10 14 14 C 1.37962 * 120.28389 * 359.67140 * 13 12 11 15 15 C 1.39376 * 119.94003 * 0.62588 * 14 13 12 16 16 C 1.48131 * 120.16918 * 179.67955 * 15 14 13 17 17 C 1.39844 * 120.55999 * 312.42498 * 16 15 14 18 18 C 1.38270 * 118.28715 * 180.27690 * 17 16 15 19 19 C 1.50702 * 120.39688 * 180.02562 * 18 17 16 20 20 C 1.52995 * 117.50277 * 343.72346 * 19 18 17 21 21 C 1.52998 * 117.49892 * 275.06106 * 19 18 17 22 22 N 1.32470 * 119.20275 * 0.02562 * 18 17 16 23 23 C 1.31815 * 121.07199 * 359.97438 * 22 18 17 24 24 C 1.50698 * 119.05731 * 180.02562 * 23 22 18 25 25 C 1.52994 * 117.49788 * 193.70317 * 24 23 22 26 26 C 1.52998 * 117.49999 * 125.03726 * 24 23 22 27 27 N 1.31678 * 121.88515 * 0.02562 * 23 22 18 28 28 H 0.96998 * 120.00140 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.97108 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.83083 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.85446 * 179.97438 * 13 12 11 32 32 H 1.08001 * 120.02809 * 180.30672 * 14 13 12 33 33 H 1.07999 * 120.85998 * 0.25570 * 17 16 15 34 34 H 1.09007 * 115.55157 * 129.39506 * 19 18 17 35 35 H 1.09001 * 117.50012 * 0.02562 * 20 19 18 36 36 H 1.08998 * 117.50043 * 145.02192 * 20 19 18 37 37 H 1.09002 * 117.49988 * 214.98067 * 21 19 18 38 38 H 1.08998 * 117.49809 * 359.97438 * 21 19 18 39 39 H 1.08999 * 115.54579 * 339.36500 * 24 23 22 40 40 H 1.08997 * 117.49982 * 359.97438 * 25 24 23 41 41 H 1.08998 * 117.49832 * 145.02418 * 25 24 23 42 42 H 1.08997 * 117.49722 * 214.97828 * 26 24 23 43 43 H 1.08994 * 117.49817 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4469 2.6526 0.7000 6 1 3.5469 1.4401 0.7002 7 6 2.0087 -1.2009 0.0005 8 1 3.0856 -1.2027 0.0829 9 8 1.3386 -2.3663 -0.1018 10 6 2.0810 -3.4966 -0.2024 11 6 3.4624 -3.4362 -0.0825 12 6 4.2165 -4.5883 -0.1848 13 6 3.6019 -5.8092 -0.4077 14 6 2.2293 -5.8864 -0.5229 15 6 1.4571 -4.7299 -0.4278 16 6 -0.0165 -4.8060 -0.5578 17 6 -0.6018 -5.5266 -1.6037 18 6 -1.9817 -5.5615 -1.6835 19 6 -2.6624 -6.3242 -2.7908 20 6 -1.8147 -6.7185 -4.0019 21 6 -2.8580 -5.6054 -4.1272 22 7 -2.6982 -4.9165 -0.7750 23 6 -2.1167 -4.2457 0.1993 24 6 -2.9759 -3.5288 1.2087 25 6 -2.2916 -2.5100 2.1222 26 6 -2.7523 -3.8564 2.6864 27 7 -0.8066 -4.1841 0.3159 28 1 -0.4850 0.8400 -0.0004 29 1 3.9479 -2.4872 0.0910 30 1 5.2912 -4.5371 -0.0913 31 1 4.1994 -6.7054 -0.4868 32 1 1.7539 -6.8413 -0.6918 33 1 0.0083 -6.0422 -2.3305 34 1 -3.4410 -7.0183 -2.4740 35 1 -0.7645 -6.4267 -3.9976 36 1 -2.0358 -7.6717 -4.4821 37 1 -3.7649 -5.8268 -4.6898 38 1 -2.4947 -4.5807 -4.2054 39 1 -3.9956 -3.3134 0.8896 40 1 -1.2199 -2.3585 1.9935 41 1 -2.8613 -1.6247 2.4046 42 1 -3.6250 -3.8562 3.3395 43 1 -1.9841 -4.5907 2.9284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:33 Heat of formation + Delta-G solvation = 99.889749 kcal Electronic energy + Delta-G solvation = -26731.242484 eV Core-core repulsion = 23130.081265 eV Total energy + Delta-G solvation = -3601.161218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69114 -38.99746 -37.48651 -36.54840 -36.08812 -33.35634 -32.34153 -31.38175 -29.56960 -28.84014 -25.54430 -25.03128 -24.43580 -22.67732 -22.33706 -21.80677 -21.47042 -20.42147 -19.63405 -18.03332 -17.41531 -17.01429 -16.13915 -15.38510 -15.09409 -14.90837 -14.67606 -14.51190 -14.27751 -14.07882 -13.81675 -13.54183 -13.53059 -12.89647 -12.61643 -12.11654 -11.75131 -11.61882 -11.54660 -11.47540 -11.09094 -10.96810 -10.91831 -10.89887 -10.83548 -10.55007 -10.50081 -10.29509 -10.20873 -9.86913 -9.70267 -9.46411 -8.90092 -8.71537 -8.55255 -8.10033 -7.27255 -6.50112 -4.07171 1.29494 1.51204 2.22007 2.32644 3.08964 3.10809 3.14427 3.67987 3.90732 3.99149 4.19052 4.35265 4.62664 4.67204 4.75578 4.89335 4.97605 5.02156 5.12915 5.16611 5.36685 5.45831 5.52076 5.52637 5.57820 5.62016 5.62944 5.74918 5.77343 5.93135 5.99799 6.00961 6.06516 6.10739 6.15281 6.27620 6.41385 6.54807 6.58587 6.67905 6.91571 6.98366 7.02815 7.14306 7.26040 7.29904 7.68659 7.70247 7.91613 8.80283 8.93232 9.62989 10.64882 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009152 B = 0.005248 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.604131 B = 5333.740681 C = 6557.589477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.046 3.954 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.398 4.398 8 H 0.092 0.908 9 O -0.144 6.144 10 C 0.182 3.818 11 C -0.236 4.236 12 C -0.058 4.058 13 C -0.222 4.222 14 C -0.044 4.044 15 C -0.149 4.149 16 C 0.259 3.741 17 C -0.234 4.234 18 C 0.199 3.801 19 C -0.105 4.105 20 C -0.172 4.172 21 C -0.160 4.160 22 N -0.530 5.530 23 C 0.359 3.641 24 C -0.099 4.099 25 C -0.135 4.135 26 C -0.165 4.165 27 N -0.482 5.482 28 H 0.270 0.730 29 H 0.131 0.869 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -9.829 -2.687 10.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.161 4.161 3 Si 0.762 3.238 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.474 4.474 8 H 0.109 0.891 9 O -0.044 6.044 10 C 0.125 3.875 11 C -0.255 4.255 12 C -0.077 4.077 13 C -0.241 4.241 14 C -0.063 4.063 15 C -0.151 4.151 16 C 0.114 3.886 17 C -0.256 4.256 18 C 0.053 3.947 19 C -0.124 4.124 20 C -0.210 4.210 21 C -0.198 4.198 22 N -0.245 5.245 23 C 0.092 3.908 24 C -0.119 4.119 25 C -0.173 4.173 26 C -0.204 4.204 27 N -0.195 5.195 28 H 0.080 0.920 29 H 0.148 0.852 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.157 0.843 34 H 0.140 0.860 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.194 -9.096 -2.006 9.847 hybrid contribution 1.052 0.439 -0.694 1.335 sum -2.141 -8.657 -2.700 9.317 Atomic orbital electron populations 1.70073 1.05797 1.27649 1.43787 1.25272 0.95807 0.98684 0.96312 0.85766 0.79066 0.80228 0.78720 1.19924 1.20220 1.19167 1.21386 0.92251 0.81041 1.52679 0.89053 1.84037 1.33402 1.11507 1.75414 1.19237 0.89849 0.87468 0.90990 1.21130 0.93444 0.99387 1.11557 1.20866 0.98618 0.92349 0.95850 1.20463 0.93983 0.97323 1.12297 1.20627 0.93503 0.95522 0.96688 1.17426 0.88775 0.92307 1.16603 1.19979 0.93299 0.87209 0.88069 1.22554 0.95939 1.05479 1.01676 1.20424 0.89839 0.91874 0.92528 1.20709 1.02523 1.02166 0.86955 1.23099 0.97732 0.99808 1.00322 1.22968 1.00955 0.98021 0.97865 1.67719 1.41839 1.10595 1.04362 1.21990 0.87580 0.90395 0.90844 1.20498 0.98382 1.04202 0.88796 1.23046 1.03653 0.91352 0.99265 1.22957 1.03059 1.01152 0.93184 1.68336 1.04790 1.18259 1.28119 0.91992 0.85173 0.87227 0.87193 0.86853 0.84269 0.86046 0.88072 0.88054 0.88158 0.88542 0.86200 0.85805 0.88870 0.88762 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.64 13.68 55.48 0.76 -22.88 16 2 C 0.05 1.22 5.49 -17.52 -0.10 1.12 16 3 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.40 -10.76 9.48 30.89 0.29 -10.46 16 8 H 0.09 2.29 5.21 -52.48 -0.27 2.02 16 9 O -0.14 -3.98 8.69 0.52 0.00 -3.98 16 10 C 0.18 4.37 6.63 -38.70 -0.26 4.11 16 11 C -0.24 -4.99 9.16 -39.44 -0.36 -5.35 16 12 C -0.06 -1.03 10.03 -39.55 -0.40 -1.42 16 13 C -0.22 -3.68 10.03 -39.59 -0.40 -4.08 16 14 C -0.04 -0.78 9.50 -39.26 -0.37 -1.16 16 15 C -0.15 -3.19 5.67 -104.74 -0.59 -3.79 16 16 C 0.26 5.61 6.09 -82.61 -0.50 5.11 16 17 C -0.23 -4.30 8.87 -38.97 -0.35 -4.64 16 18 C 0.20 3.53 6.49 -82.30 -0.53 3.00 16 19 C -0.10 -1.41 6.24 -91.77 -0.57 -1.98 16 20 C -0.17 -1.87 9.83 -26.70 -0.26 -2.13 16 21 C -0.16 -1.92 10.24 -26.69 -0.27 -2.19 16 22 N -0.53 -10.55 10.26 -7.06 -0.07 -10.62 16 23 C 0.36 7.62 7.31 -157.28 -1.15 6.47 16 24 C -0.10 -1.83 6.23 -91.78 -0.57 -2.40 16 25 C -0.14 -2.55 10.01 -26.69 -0.27 -2.81 16 26 C -0.17 -2.65 10.22 -26.69 -0.27 -2.92 16 27 N -0.48 -11.09 8.66 -7.31 -0.06 -11.15 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.11 1.70 8.01 -52.49 -0.42 1.28 16 33 H 0.14 2.16 6.37 -52.49 -0.33 1.82 16 34 H 0.12 1.47 8.14 -51.92 -0.42 1.05 16 35 H 0.10 1.14 6.46 -51.93 -0.34 0.80 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 40 H 0.12 2.88 7.59 -51.93 -0.39 2.48 16 41 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -30.89 368.51 -11.19 -42.09 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.42 Total: 11.52 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -6.93 Total: -25.53 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.62 Total: -44.65 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: 0.00 Total: -3.98 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.89 -11.19 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.978 kcal (2) G-P(sol) polarization free energy of solvation -30.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds