Wall clock time and date at job start Tue Mar 31 2020 13:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31542 * 1 3 3 Si 1.86798 * 119.99932 * 2 1 4 4 H 1.48498 * 109.47201 * 269.99681 * 3 2 1 5 5 H 1.48497 * 109.47210 * 29.99991 * 3 2 1 6 6 H 1.48506 * 109.46897 * 149.99568 * 3 2 1 7 7 C 1.38665 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99663 * 185.04968 * 7 2 1 9 9 O 1.34816 * 120.00617 * 5.05218 * 7 2 1 10 10 C 1.35611 * 117.00207 * 174.88902 * 9 7 2 11 11 C 1.38790 * 120.14617 * 5.52588 * 10 9 7 12 12 C 1.38074 * 120.05454 * 179.97438 * 11 10 9 13 13 C 1.38487 * 120.34273 * 0.02562 * 12 11 10 14 14 C 1.37962 * 120.28389 * 359.67140 * 13 12 11 15 15 C 1.39376 * 119.94003 * 0.62588 * 14 13 12 16 16 C 1.48131 * 120.16918 * 179.67955 * 15 14 13 17 17 C 1.39844 * 120.55999 * 312.42498 * 16 15 14 18 18 C 1.38270 * 118.28715 * 180.27690 * 17 16 15 19 19 C 1.50702 * 120.39688 * 180.02562 * 18 17 16 20 20 C 1.52995 * 117.50277 * 343.72346 * 19 18 17 21 21 C 1.52998 * 117.49892 * 275.06106 * 19 18 17 22 22 N 1.32470 * 119.20275 * 0.02562 * 18 17 16 23 23 C 1.31815 * 121.07199 * 359.97438 * 22 18 17 24 24 C 1.50698 * 119.05731 * 180.02562 * 23 22 18 25 25 C 1.52994 * 117.49788 * 193.70317 * 24 23 22 26 26 C 1.52998 * 117.49999 * 125.03726 * 24 23 22 27 27 N 1.31678 * 121.88515 * 0.02562 * 23 22 18 28 28 H 0.96998 * 120.00140 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.97108 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.83083 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.85446 * 179.97438 * 13 12 11 32 32 H 1.08001 * 120.02809 * 180.30672 * 14 13 12 33 33 H 1.07999 * 120.85998 * 0.25570 * 17 16 15 34 34 H 1.09007 * 115.55157 * 129.39506 * 19 18 17 35 35 H 1.09001 * 117.50012 * 0.02562 * 20 19 18 36 36 H 1.08998 * 117.50043 * 145.02192 * 20 19 18 37 37 H 1.09002 * 117.49988 * 214.98067 * 21 19 18 38 38 H 1.08998 * 117.49809 * 359.97438 * 21 19 18 39 39 H 1.08999 * 115.54579 * 339.36500 * 24 23 22 40 40 H 1.08997 * 117.49982 * 359.97438 * 25 24 23 41 41 H 1.08998 * 117.49832 * 145.02418 * 25 24 23 42 42 H 1.08997 * 117.49722 * 214.97828 * 26 24 23 43 43 H 1.08994 * 117.49817 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4469 2.6526 0.7000 6 1 3.5469 1.4401 0.7002 7 6 2.0087 -1.2009 0.0005 8 1 3.0856 -1.2027 0.0829 9 8 1.3386 -2.3663 -0.1018 10 6 2.0810 -3.4966 -0.2024 11 6 3.4624 -3.4362 -0.0825 12 6 4.2165 -4.5883 -0.1848 13 6 3.6019 -5.8092 -0.4077 14 6 2.2293 -5.8864 -0.5229 15 6 1.4571 -4.7299 -0.4278 16 6 -0.0165 -4.8060 -0.5578 17 6 -0.6018 -5.5266 -1.6037 18 6 -1.9817 -5.5615 -1.6835 19 6 -2.6624 -6.3242 -2.7908 20 6 -1.8147 -6.7185 -4.0019 21 6 -2.8580 -5.6054 -4.1272 22 7 -2.6982 -4.9165 -0.7750 23 6 -2.1167 -4.2457 0.1993 24 6 -2.9759 -3.5288 1.2087 25 6 -2.2916 -2.5100 2.1222 26 6 -2.7523 -3.8564 2.6864 27 7 -0.8066 -4.1841 0.3159 28 1 -0.4850 0.8400 -0.0004 29 1 3.9479 -2.4872 0.0910 30 1 5.2912 -4.5371 -0.0913 31 1 4.1994 -6.7054 -0.4868 32 1 1.7539 -6.8413 -0.6918 33 1 0.0083 -6.0422 -2.3305 34 1 -3.4410 -7.0183 -2.4740 35 1 -0.7645 -6.4267 -3.9976 36 1 -2.0358 -7.6717 -4.4821 37 1 -3.7649 -5.8268 -4.6898 38 1 -2.4947 -4.5807 -4.2054 39 1 -3.9956 -3.3134 0.8896 40 1 -1.2199 -2.3585 1.9935 41 1 -2.8613 -1.6247 2.4046 42 1 -3.6250 -3.8562 3.3395 43 1 -1.9841 -4.5907 2.9284 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585647.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:32 Heat of formation + Delta-G solvation = 83.716751 kcal Electronic energy + Delta-G solvation = -26731.943798 eV Core-core repulsion = 23130.081265 eV Total energy + Delta-G solvation = -3601.862532 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.18181 -40.65752 -38.66737 -38.18836 -37.45321 -34.86665 -34.25942 -32.86323 -31.07956 -30.45387 -27.40048 -26.51799 -25.89082 -24.04033 -23.30052 -23.23498 -23.05757 -21.93534 -20.95423 -19.82120 -19.06684 -18.45092 -17.66349 -16.73995 -16.48170 -16.44117 -16.25733 -16.05453 -15.60601 -15.57810 -15.46146 -15.13060 -14.95388 -14.42908 -14.29493 -13.55789 -13.38336 -13.12903 -12.90005 -12.61468 -12.49538 -12.47501 -12.42291 -12.36755 -12.21900 -12.15756 -11.77693 -11.71844 -11.47964 -11.26746 -11.25404 -11.00064 -10.80069 -10.18673 -10.09662 -9.61965 -8.95474 -8.43574 -6.10185 -0.25346 0.04957 0.65658 0.77774 1.32374 1.41566 1.48558 2.15166 2.49355 2.62302 2.78894 2.90639 3.08030 3.23411 3.24607 3.40337 3.48385 3.86835 3.88603 3.91454 4.00934 4.09543 4.12748 4.14931 4.20381 4.23826 4.33885 4.50271 4.57346 4.63038 4.70454 4.73249 4.76768 4.93865 4.96240 5.02254 5.11198 5.11369 5.15325 5.19136 5.22191 5.39857 5.45249 5.58795 5.66647 5.71732 5.99263 6.16821 6.21547 6.98322 7.26598 7.80390 8.75817 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009152 B = 0.005248 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.604131 B = 5333.740681 C = 6557.589477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.013 4.013 3 Si 1.011 2.989 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.420 4.420 8 H 0.099 0.901 9 O -0.195 6.195 10 C 0.143 3.857 11 C -0.254 4.254 12 C -0.052 4.052 13 C -0.194 4.194 14 C -0.043 4.043 15 C -0.161 4.161 16 C 0.228 3.772 17 C -0.231 4.231 18 C 0.195 3.805 19 C -0.123 4.123 20 C -0.147 4.147 21 C -0.162 4.162 22 N -0.539 5.539 23 C 0.336 3.664 24 C -0.111 4.111 25 C -0.150 4.150 26 C -0.129 4.129 27 N -0.518 5.518 28 H 0.269 0.731 29 H 0.121 0.879 30 H 0.150 0.850 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.169 0.831 34 H 0.139 0.861 35 H 0.096 0.904 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.070 0.930 39 H 0.137 0.863 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.137 0.863 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 -13.052 -3.836 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.213 4.213 3 Si 0.831 3.169 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.496 4.496 8 H 0.116 0.884 9 O -0.098 6.098 10 C 0.089 3.911 11 C -0.273 4.273 12 C -0.071 4.071 13 C -0.212 4.212 14 C -0.062 4.062 15 C -0.164 4.164 16 C 0.084 3.916 17 C -0.252 4.252 18 C 0.049 3.951 19 C -0.141 4.141 20 C -0.184 4.184 21 C -0.200 4.200 22 N -0.254 5.254 23 C 0.069 3.931 24 C -0.131 4.131 25 C -0.188 4.188 26 C -0.167 4.167 27 N -0.233 5.233 28 H 0.078 0.922 29 H 0.139 0.861 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.166 0.834 33 H 0.186 0.814 34 H 0.157 0.843 35 H 0.115 0.885 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.155 0.845 40 H 0.089 0.911 41 H 0.127 0.873 42 H 0.155 0.845 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.113 -12.378 -3.158 12.948 hybrid contribution 0.853 1.081 -0.409 1.436 sum -1.261 -11.297 -3.567 11.913 Atomic orbital electron populations 1.70244 1.07663 1.28242 1.46975 1.26437 0.96734 1.02226 0.95859 0.84692 0.78015 0.75214 0.78956 1.19267 1.19761 1.17706 1.21808 0.92776 0.81836 1.53227 0.88395 1.84032 1.34617 1.12373 1.78804 1.19897 0.91343 0.87639 0.92225 1.21273 0.92715 1.00763 1.12526 1.21333 1.00476 0.91329 0.93920 1.21093 0.93737 0.98523 1.07851 1.21094 0.94161 0.95484 0.95474 1.17911 0.89435 0.92722 1.16309 1.20363 0.93655 0.88291 0.89334 1.22821 0.96646 1.04756 1.00997 1.21215 0.90076 0.90976 0.92788 1.20846 1.04124 1.02909 0.86248 1.23249 0.96981 1.00664 0.97510 1.23042 1.02781 0.97242 0.96919 1.67830 1.42048 1.10915 1.04626 1.22481 0.87575 0.91119 0.91959 1.20718 0.98546 1.04071 0.89758 1.22788 1.00807 0.93504 1.01745 1.23018 1.03595 0.98059 0.92003 1.68320 1.05842 1.19257 1.29849 0.92239 0.86125 0.83198 0.82272 0.83430 0.81363 0.84320 0.88529 0.84543 0.85448 0.91119 0.84502 0.91111 0.87265 0.84470 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.71 13.68 21.61 0.30 -54.41 16 2 C -0.01 -0.72 5.49 84.84 0.47 -0.25 16 3 Si 1.01 43.33 29.55 68.60 2.03 45.35 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 6 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.42 -24.52 9.48 67.92 0.64 -23.87 16 8 H 0.10 5.27 5.21 -2.91 -0.02 5.25 16 9 O -0.19 -11.73 8.69 -21.06 -0.18 -11.91 16 10 C 0.14 7.22 6.63 22.84 0.15 7.37 16 11 C -0.25 -10.92 9.16 22.36 0.20 -10.71 16 12 C -0.05 -1.70 10.03 22.29 0.22 -1.47 16 13 C -0.19 -5.57 10.03 22.26 0.22 -5.35 16 14 C -0.04 -1.43 9.50 22.48 0.21 -1.21 16 15 C -0.16 -7.08 5.67 -19.94 -0.11 -7.19 16 16 C 0.23 10.24 6.09 41.95 0.26 10.50 16 17 C -0.23 -8.45 8.87 22.67 0.20 -8.25 16 18 C 0.19 6.91 6.49 42.47 0.28 7.18 16 19 C -0.12 -3.04 6.24 -11.54 -0.07 -3.11 16 20 C -0.15 -2.68 9.83 30.62 0.30 -2.38 16 21 C -0.16 -3.55 10.24 30.62 0.31 -3.24 16 22 N -0.54 -22.00 10.26 -176.25 -1.81 -23.81 16 23 C 0.34 15.04 7.31 138.78 1.01 16.06 16 24 C -0.11 -4.31 6.23 -11.54 -0.07 -4.38 16 25 C -0.15 -6.11 10.01 30.62 0.31 -5.80 16 26 C -0.13 -4.20 10.22 30.62 0.31 -3.89 16 27 N -0.52 -25.55 8.66 -177.04 -1.53 -27.09 16 28 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.12 5.29 5.64 -2.91 -0.02 5.28 16 30 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.16 3.16 8.06 -2.91 -0.02 3.13 16 32 H 0.15 3.83 8.01 -2.91 -0.02 3.81 16 33 H 0.17 4.91 6.37 -2.91 -0.02 4.90 16 34 H 0.14 2.97 8.14 -2.38 -0.02 2.95 16 35 H 0.10 1.87 6.46 -2.39 -0.02 1.85 16 36 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 40 H 0.07 3.69 7.59 -2.39 -0.02 3.67 16 41 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 42 H 0.14 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -77.71 368.51 4.69 -73.02 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: 1.04 Total: 38.84 kcal Atomic # 6 Polarization: -44.85 SS G_CDS: 4.85 Total: -40.00 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -3.05 Total: -105.30 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.18 Total: -11.91 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -77.71 4.69 -73.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585647.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.740 kcal (2) G-P(sol) polarization free energy of solvation -77.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds