Wall clock time and date at job start Tue Mar 31 2020 13:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86802 * 119.99948 * 2 1 4 4 H 1.48499 * 109.46707 * 240.00041 * 3 2 1 5 5 H 1.48502 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47345 * 119.99676 * 3 2 1 7 7 C 1.38663 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00029 * 189.82376 * 7 2 1 9 9 O 1.34815 * 120.00116 * 9.82342 * 7 2 1 10 10 C 1.35618 * 116.99661 * 185.33482 * 9 7 2 11 11 C 1.38795 * 120.14893 * 5.80309 * 10 9 7 12 12 C 1.38078 * 120.05449 * 180.29901 * 11 10 9 13 13 C 1.38474 * 120.34519 * 359.72056 * 12 11 10 14 14 C 1.37966 * 120.28559 * 0.02562 * 13 12 11 15 15 C 1.39381 * 119.93760 * 359.97438 * 14 13 12 16 16 C 1.48133 * 120.16707 * 180.02562 * 15 14 13 17 17 N 1.33266 * 120.60327 * 227.34897 * 16 15 14 18 18 C 1.31648 * 120.61034 * 180.22575 * 17 16 15 19 19 C 1.50703 * 119.01658 * 180.02562 * 18 17 16 20 20 C 1.53004 * 117.50161 * 9.82061 * 19 18 17 21 21 C 1.52995 * 59.99949 * 252.51431 * 20 19 18 22 22 N 1.31814 * 121.96446 * 0.07424 * 18 17 16 23 23 C 1.32572 * 121.06471 * 359.95361 * 22 18 17 24 24 C 1.38129 * 119.04948 * 359.97438 * 23 22 18 25 25 C 1.51048 * 109.94887 * 179.97438 * 24 23 22 26 26 C 1.54422 * 105.12802 * 342.99451 * 25 24 23 27 27 C 1.51201 * 131.22596 * 180.02562 * 23 22 18 28 28 H 0.96997 * 119.99868 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.96824 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.82425 * 179.74064 * 12 11 10 31 31 H 1.07998 * 119.86230 * 180.02562 * 13 12 11 32 32 H 1.07999 * 120.03069 * 179.97438 * 14 13 12 33 33 H 1.08996 * 115.54794 * 155.53634 * 19 18 17 34 34 H 1.09007 * 117.49343 * 0.02562 * 20 19 18 35 35 H 1.08998 * 117.49824 * 145.01959 * 20 19 18 36 36 H 1.09003 * 117.50026 * 252.50848 * 21 20 19 37 37 H 1.09006 * 117.52193 * 107.48302 * 21 20 19 38 38 H 1.09005 * 110.30486 * 101.90782 * 25 24 23 39 39 H 1.08996 * 110.31139 * 224.07702 * 25 24 23 40 40 H 1.08999 * 110.82070 * 267.84104 * 26 25 24 41 41 H 1.09010 * 110.81773 * 144.30223 * 26 25 24 42 42 H 1.09003 * 110.29574 * 315.95661 * 27 23 22 43 43 H 1.09000 * 110.30131 * 78.10152 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6963 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0088 -1.2009 0.0005 8 1 3.0769 -1.2077 0.1601 9 8 1.3495 -2.3599 -0.1981 10 6 2.0662 -3.5047 -0.0752 11 6 3.3838 -3.4591 0.3586 12 6 4.1136 -4.6252 0.4772 13 6 3.5363 -5.8460 0.1705 14 6 2.2261 -5.9083 -0.2571 15 6 1.4785 -4.7385 -0.3809 16 6 0.0711 -4.7995 -0.8390 17 7 -0.3697 -3.9749 -1.7887 18 6 -1.6216 -4.0260 -2.1927 19 6 -2.0815 -3.0771 -3.2694 20 6 -1.0109 -2.2608 -3.9963 21 6 -1.9450 -1.5781 -2.9953 22 7 -2.4850 -4.8817 -1.6831 23 6 -2.1241 -5.7345 -0.7344 24 6 -0.8200 -5.7191 -0.2793 25 6 -0.6360 -6.7665 0.7934 26 6 -2.0654 -7.1293 1.2517 27 6 -2.9088 -6.7971 0.0015 28 1 -0.4850 0.8400 -0.0004 29 1 3.8399 -2.5102 0.5995 30 1 5.1399 -4.5850 0.8111 31 1 4.1142 -6.7533 0.2664 32 1 1.7801 -6.8625 -0.4955 33 1 -2.9439 -3.4062 -3.8490 34 1 0.0263 -2.4106 -3.6961 35 1 -1.1687 -2.0530 -5.0546 36 1 -2.7174 -0.9209 -3.3950 37 1 -1.5229 -1.2782 -2.0361 38 1 -0.1359 -7.6440 0.3835 39 1 -0.0637 -6.3585 1.6264 40 1 -2.3684 -6.5141 2.0989 41 1 -2.1365 -8.1893 1.4961 42 1 -3.8845 -6.4106 0.2959 43 1 -3.0247 -7.6825 -0.6236 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:25 Heat of formation + Delta-G solvation = 52.039862 kcal Electronic energy + Delta-G solvation = -27224.717007 eV Core-core repulsion = 23621.480862 eV Total energy + Delta-G solvation = -3603.236145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.38644 -40.64563 -38.75422 -38.09839 -36.90657 -34.99535 -34.27084 -32.02400 -30.67907 -30.09785 -29.13194 -27.33087 -25.55865 -24.97427 -23.30540 -23.21166 -22.57140 -21.54060 -21.28062 -19.82290 -19.07591 -18.51139 -17.49958 -16.80578 -16.51406 -16.24020 -16.16458 -15.68400 -15.47651 -15.41731 -15.21905 -14.92994 -14.63782 -14.36063 -13.99790 -13.73970 -13.54601 -13.42295 -13.10061 -12.87341 -12.61999 -12.46215 -12.42686 -12.38153 -12.21166 -12.16226 -12.10300 -11.65062 -11.57764 -11.36459 -11.29791 -11.23606 -10.77778 -10.11048 -9.91609 -9.52924 -8.93251 -8.45251 -6.09666 -0.23703 0.07864 0.66993 0.79212 1.31587 1.42334 1.46927 2.15261 2.51834 2.64761 2.82535 3.04577 3.13773 3.26421 3.43656 3.48690 3.60400 3.87168 3.92345 4.03442 4.09156 4.12746 4.14169 4.19813 4.29438 4.44604 4.56848 4.62655 4.74827 4.75372 4.78566 4.83341 4.86950 4.91334 5.01477 5.03608 5.11223 5.13426 5.19853 5.24055 5.31250 5.34900 5.48952 5.60093 5.68648 5.72091 5.99057 6.17289 6.21211 6.98164 7.27374 7.80735 8.74596 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.005981 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.979070 B = 4680.632312 C = 6434.019963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.010 4.010 3 Si 1.010 2.990 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.419 4.419 8 H 0.096 0.904 9 O -0.196 6.196 10 C 0.141 3.859 11 C -0.255 4.255 12 C -0.054 4.054 13 C -0.193 4.193 14 C -0.041 4.041 15 C -0.156 4.156 16 C 0.228 3.772 17 N -0.516 5.516 18 C 0.325 3.675 19 C -0.100 4.100 20 C -0.142 4.142 21 C -0.158 4.158 22 N -0.538 5.538 23 C 0.142 3.858 24 C -0.217 4.217 25 C -0.065 4.065 26 C -0.106 4.106 27 C -0.062 4.062 28 H 0.269 0.731 29 H 0.119 0.881 30 H 0.150 0.850 31 H 0.160 0.840 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.072 0.928 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.126 0.874 42 H 0.093 0.907 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 -14.019 -0.336 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.210 4.210 3 Si 0.830 3.170 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.495 4.495 8 H 0.114 0.886 9 O -0.100 6.100 10 C 0.087 3.913 11 C -0.274 4.274 12 C -0.072 4.072 13 C -0.212 4.212 14 C -0.060 4.060 15 C -0.159 4.159 16 C 0.085 3.915 17 N -0.229 5.229 18 C 0.058 3.942 19 C -0.119 4.119 20 C -0.179 4.179 21 C -0.197 4.197 22 N -0.253 5.253 23 C -0.005 4.005 24 C -0.221 4.221 25 C -0.103 4.103 26 C -0.144 4.144 27 C -0.100 4.100 28 H 0.078 0.922 29 H 0.137 0.863 30 H 0.168 0.832 31 H 0.178 0.822 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.091 0.909 35 H 0.151 0.849 36 H 0.144 0.856 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.144 0.856 42 H 0.111 0.889 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.545 -13.183 -1.100 13.319 hybrid contribution 0.656 1.131 0.641 1.456 sum -0.889 -12.052 -0.459 12.093 Atomic orbital electron populations 1.70206 1.07729 1.28384 1.47039 1.26394 0.96648 1.02193 0.95735 0.84778 0.77555 0.74962 0.79721 1.18690 1.19742 1.18162 1.21726 0.93262 0.82152 1.52338 0.88625 1.84038 1.37276 1.11756 1.76937 1.19930 0.91533 0.87196 0.92638 1.21276 0.94684 1.00561 1.10869 1.21317 0.99804 0.91276 0.94781 1.21084 0.95055 0.98485 1.06549 1.21046 0.94134 0.95339 0.95491 1.17895 0.92436 0.92307 1.13227 1.19957 0.93881 0.88377 0.89323 1.68363 1.17440 1.23089 1.14028 1.22440 0.84942 0.92394 0.94433 1.20721 1.02809 0.90434 0.97969 1.22893 0.95295 1.01325 0.98402 1.22957 1.03118 0.92395 1.01192 1.67351 1.38399 1.06696 1.12817 1.22984 0.93942 0.93237 0.90312 1.22514 0.95864 1.01273 1.02482 1.20995 0.99614 0.95290 0.94439 1.22419 0.91699 1.04398 0.95881 1.21193 0.98519 0.94503 0.95744 0.92195 0.86278 0.83248 0.82233 0.83691 0.83373 0.90920 0.84864 0.85632 0.91678 0.87309 0.91001 0.91036 0.85618 0.88851 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.99 13.69 21.62 0.30 -54.69 16 2 C -0.01 -0.56 5.49 84.84 0.47 -0.10 16 3 Si 1.01 43.71 29.56 68.60 2.03 45.73 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.42 -24.68 9.42 67.92 0.64 -24.04 16 8 H 0.10 5.22 5.32 -2.91 -0.02 5.20 16 9 O -0.20 -11.97 8.71 -21.13 -0.18 -12.15 16 10 C 0.14 7.21 6.63 22.84 0.15 7.36 16 11 C -0.25 -11.14 9.13 22.37 0.20 -10.94 16 12 C -0.05 -1.76 10.03 22.29 0.22 -1.54 16 13 C -0.19 -5.62 10.03 22.26 0.22 -5.39 16 14 C -0.04 -1.38 8.91 22.48 0.20 -1.18 16 15 C -0.16 -6.96 5.59 -19.94 -0.11 -7.07 16 16 C 0.23 10.47 6.09 41.92 0.26 10.73 16 17 N -0.52 -25.86 8.64 -177.09 -1.53 -27.39 16 18 C 0.32 14.77 7.31 138.79 1.01 15.78 16 19 C -0.10 -3.86 6.23 -11.54 -0.07 -3.94 16 20 C -0.14 -5.34 10.01 30.59 0.31 -5.03 16 21 C -0.16 -6.45 10.23 30.59 0.31 -6.14 16 22 N -0.54 -22.30 10.33 -175.81 -1.82 -24.12 16 23 C 0.14 5.05 7.37 42.58 0.31 5.36 16 24 C -0.22 -8.03 5.91 -19.41 -0.11 -8.15 16 25 C -0.07 -1.63 5.54 30.44 0.17 -1.46 16 26 C -0.11 -1.95 7.09 31.56 0.22 -1.72 16 27 C -0.06 -1.39 6.77 30.49 0.21 -1.18 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.12 5.32 5.71 -2.91 -0.02 5.31 16 30 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 31 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.15 3.84 7.19 -2.91 -0.02 3.82 16 33 H 0.15 4.72 8.14 -2.39 -0.02 4.70 16 34 H 0.07 3.33 7.55 -2.38 -0.02 3.31 16 35 H 0.13 3.79 8.14 -2.39 -0.02 3.77 16 36 H 0.13 4.12 8.14 -2.39 -0.02 4.10 16 37 H 0.06 3.45 8.14 -2.38 -0.02 3.43 16 38 H 0.11 2.06 7.70 -2.38 -0.02 2.04 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -80.70 361.20 4.44 -76.25 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: 1.04 Total: 35.00 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 4.61 Total: -38.64 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -3.05 Total: -106.20 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.18 Total: -12.15 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -80.70 4.44 -76.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.293 kcal (2) G-P(sol) polarization free energy of solvation -80.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds