Wall clock time and date at job start Tue Mar 31 2020 13:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31540 * 1 3 3 Si 1.86801 * 119.99981 * 2 1 4 4 H 1.48505 * 109.46941 * 269.99796 * 3 2 1 5 5 H 1.48491 * 109.47232 * 29.99800 * 3 2 1 6 6 H 1.48498 * 109.47055 * 150.00177 * 3 2 1 7 7 C 1.38678 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00223 * 0.02562 * 7 2 1 9 9 O 1.34819 * 119.99701 * 179.97438 * 7 2 1 10 10 C 1.35653 * 116.99540 * 185.12512 * 9 7 2 11 11 C 1.39032 * 119.94702 * 6.02060 * 10 9 7 12 12 C 1.37792 * 120.05595 * 180.02562 * 11 10 9 13 13 C 1.39510 * 119.94505 * 0.02562 * 12 11 10 14 14 C 1.48181 * 120.05633 * 179.97438 * 13 12 11 15 15 N 1.33261 * 120.59772 * 222.35728 * 14 13 12 16 16 C 1.31643 * 120.60990 * 179.75319 * 15 14 13 17 17 C 1.50706 * 119.01821 * 180.26449 * 16 15 14 18 18 C 1.53005 * 117.49840 * 8.88861 * 17 16 15 19 19 C 1.52998 * 117.49775 * 300.26725 * 17 16 15 20 20 N 1.31813 * 121.96565 * 0.53817 * 16 15 14 21 21 C 1.32573 * 121.06106 * 359.72672 * 20 16 15 22 22 C 1.38140 * 119.04788 * 0.02562 * 21 20 16 23 23 C 1.51038 * 109.94846 * 179.97438 * 22 21 20 24 24 C 1.54414 * 105.13095 * 342.99113 * 23 22 21 25 25 C 1.51193 * 131.23084 * 180.02562 * 21 20 16 26 26 C 1.39508 * 119.88830 * 359.97438 * 13 12 11 27 27 C 1.37795 * 119.93831 * 359.97438 * 26 13 12 28 28 H 0.97001 * 120.00221 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.97237 * 0.27678 * 11 10 9 30 30 H 1.08001 * 120.03066 * 179.97438 * 12 11 10 31 31 H 1.09002 * 115.54889 * 154.59520 * 17 16 15 32 32 H 1.09004 * 117.49379 * 359.97438 * 18 17 16 33 33 H 1.08997 * 117.49947 * 145.01883 * 18 17 16 34 34 H 1.08998 * 117.49934 * 214.97397 * 19 17 16 35 35 H 1.09006 * 117.49773 * 359.97438 * 19 17 16 36 36 H 1.09002 * 110.30962 * 101.90599 * 23 22 21 37 37 H 1.09001 * 110.30838 * 224.07538 * 23 22 21 38 38 H 1.08998 * 110.82346 * 267.84685 * 24 23 22 39 39 H 1.08997 * 110.99161 * 144.38272 * 24 23 22 40 40 H 1.08999 * 110.30000 * 315.98939 * 25 21 20 41 41 H 1.09000 * 110.29838 * 78.03418 * 25 21 20 42 42 H 1.07997 * 120.03157 * 179.97438 * 26 13 12 43 43 H 1.07996 * 119.96616 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0464 -1.4001 5 1 1.4469 2.6526 0.6999 6 1 3.5469 1.4402 0.7000 7 6 2.0088 -1.2010 0.0005 8 1 1.4688 -2.1363 0.0005 9 8 3.3569 -1.2010 0.0000 10 6 3.9727 -2.4049 -0.1074 11 6 3.2201 -3.5514 -0.3360 12 6 3.8432 -4.7756 -0.4450 13 6 5.2303 -4.8641 -0.3251 14 6 5.9029 -6.1793 -0.4413 15 7 6.8893 -6.5126 0.3904 16 6 7.4838 -7.6829 0.2904 17 6 8.5912 -8.0250 1.2536 18 6 8.8242 -7.0735 2.4290 19 6 9.8207 -7.1145 1.2687 20 7 7.1428 -8.5624 -0.6303 21 6 6.1745 -8.3038 -1.4980 22 6 5.5184 -7.0901 -1.4288 23 6 4.4624 -7.0130 -2.5060 24 6 4.8310 -8.1249 -3.5120 25 6 5.6032 -9.1288 -2.6289 26 6 5.9832 -3.7122 -0.0958 27 6 5.3553 -2.4903 0.0114 28 1 -0.4850 0.8400 -0.0004 29 1 2.1467 -3.4819 -0.4323 30 1 3.2582 -5.6659 -0.6221 31 1 8.7508 -9.0891 1.4278 32 1 8.1767 -6.2000 2.5053 33 1 9.1370 -7.5116 3.3768 34 1 10.7891 -7.5794 1.4532 35 1 9.8287 -6.2682 0.5816 36 1 3.4754 -7.1982 -2.0821 37 1 4.4891 -6.0382 -2.9928 38 1 5.4699 -7.7346 -4.3041 39 1 3.9359 -8.5855 -3.9302 40 1 6.4061 -9.5952 -3.1998 41 1 4.9269 -9.8891 -2.2381 42 1 7.0571 -3.7781 -0.0022 43 1 5.9378 -1.5982 0.1885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243588588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:28 Heat of formation + Delta-G solvation = 51.684078 kcal Electronic energy + Delta-G solvation = -25822.055102 eV Core-core repulsion = 22218.803529 eV Total energy + Delta-G solvation = -3603.251573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.51495 -40.91662 -38.83984 -38.47767 -36.93206 -34.95230 -34.39565 -32.13555 -31.53189 -29.96703 -29.20414 -27.40410 -25.49292 -24.78540 -23.70544 -23.26062 -22.53629 -21.59145 -21.35086 -19.92660 -19.27057 -18.72169 -17.77920 -16.91776 -16.62143 -16.35313 -15.97960 -15.79052 -15.60154 -15.45298 -15.39423 -15.00814 -14.49608 -14.44351 -14.25631 -14.10132 -13.79129 -13.46852 -13.29262 -13.01884 -12.77728 -12.67818 -12.58447 -12.43334 -12.24135 -12.14088 -11.99740 -11.78010 -11.67698 -11.38331 -11.35503 -11.29323 -10.91839 -10.21141 -9.96835 -9.94014 -9.04043 -8.53730 -6.26121 -0.37850 -0.07558 0.46817 0.67526 1.32462 1.35537 1.51990 2.26165 2.42932 2.57843 2.68652 2.82293 2.99065 3.02541 3.18403 3.36856 3.50965 3.76037 3.87975 3.93371 4.00431 4.05034 4.08864 4.13608 4.15894 4.39225 4.43969 4.53253 4.69600 4.71897 4.76417 4.78789 4.79865 4.86930 4.91206 5.02041 5.09552 5.12640 5.14826 5.23803 5.27036 5.30621 5.37731 5.51481 5.53243 5.69384 5.77543 6.02528 6.08704 6.79796 7.10608 7.50025 8.57077 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015579 B = 0.003146 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.906046 B = 8896.719455 C =10301.751433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.402 4.402 8 H 0.087 0.913 9 O -0.233 6.233 10 C 0.143 3.857 11 C -0.231 4.231 12 C -0.034 4.034 13 C -0.136 4.136 14 C 0.233 3.767 15 N -0.528 5.528 16 C 0.334 3.666 17 C -0.114 4.114 18 C -0.150 4.150 19 C -0.143 4.143 20 N -0.535 5.535 21 C 0.158 3.842 22 C -0.212 4.212 23 C -0.076 4.076 24 C -0.107 4.107 25 C -0.067 4.067 26 C -0.029 4.029 27 C -0.190 4.190 28 H 0.286 0.714 29 H 0.123 0.877 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.138 0.862 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.189 -17.760 -3.860 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.478 4.478 8 H 0.104 0.896 9 O -0.140 6.140 10 C 0.092 3.908 11 C -0.250 4.250 12 C -0.053 4.053 13 C -0.138 4.138 14 C 0.090 3.910 15 N -0.242 5.242 16 C 0.068 3.932 17 C -0.133 4.133 18 C -0.188 4.188 19 C -0.182 4.182 20 N -0.249 5.249 21 C 0.012 3.988 22 C -0.217 4.217 23 C -0.114 4.114 24 C -0.145 4.145 25 C -0.104 4.104 26 C -0.048 4.048 27 C -0.210 4.210 28 H 0.096 0.904 29 H 0.140 0.860 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.108 0.892 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.156 0.844 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 15.807 -17.642 -3.204 23.904 hybrid contribution -1.053 1.044 -0.315 1.516 sum 14.754 -16.598 -3.519 22.485 Atomic orbital electron populations 1.69707 1.06906 1.29810 1.49147 1.25260 0.95828 1.02109 0.95210 0.85267 0.78937 0.77511 0.79381 1.18989 1.19226 1.18574 1.20746 0.77777 0.96355 1.52920 0.89589 1.83516 1.21588 1.27216 1.81642 1.19731 0.92811 0.85251 0.93029 1.21178 1.00716 0.92667 1.10449 1.20918 0.92833 0.96665 0.94899 1.18128 0.92908 0.90671 1.12064 1.19786 0.89774 0.92655 0.88785 1.68281 1.09793 1.19998 1.26138 1.22518 0.94096 0.84868 0.91760 1.20746 0.94614 0.99228 0.98761 1.23051 1.01906 1.00598 0.93196 1.23035 0.93756 1.00176 1.01194 1.67417 1.16426 1.35595 1.05511 1.22837 0.88606 0.93608 0.93762 1.22418 1.02513 0.96682 1.00041 1.21044 0.96065 1.01252 0.93066 1.22389 1.01643 0.94066 0.96404 1.21200 1.00280 0.97517 0.91420 1.20862 0.99701 0.90049 0.94180 1.20376 0.90822 0.99281 1.10471 0.90382 0.85968 0.84459 0.84236 0.89245 0.85805 0.85282 0.90040 0.88848 0.90461 0.89981 0.86870 0.88004 0.87104 0.84408 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.04 13.96 21.62 0.30 -52.74 16 2 C 0.02 0.87 5.49 84.84 0.47 1.34 16 3 Si 0.97 43.96 28.62 68.60 1.96 45.92 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.40 -22.80 9.90 67.93 0.67 -22.12 16 8 H 0.09 5.07 5.51 -2.91 -0.02 5.05 16 9 O -0.23 -12.22 8.58 -21.55 -0.18 -12.41 16 10 C 0.14 6.46 6.65 22.65 0.15 6.61 16 11 C -0.23 -9.73 9.11 22.35 0.20 -9.53 16 12 C -0.03 -1.19 8.86 22.47 0.20 -0.99 16 13 C -0.14 -4.63 5.65 -20.02 -0.11 -4.75 16 14 C 0.23 7.39 6.41 41.93 0.27 7.66 16 15 N -0.53 -16.71 9.18 -177.06 -1.63 -18.34 16 16 C 0.33 9.63 7.31 138.79 1.01 10.64 16 17 C -0.11 -2.47 6.23 -11.54 -0.07 -2.54 16 18 C -0.15 -2.87 10.01 30.60 0.31 -2.56 16 19 C -0.14 -2.55 10.23 30.59 0.31 -2.23 16 20 N -0.53 -15.10 10.33 -175.81 -1.82 -16.91 16 21 C 0.16 3.94 7.37 42.58 0.31 4.26 16 22 C -0.21 -5.69 5.88 -19.42 -0.11 -5.80 16 23 C -0.08 -1.53 5.28 30.44 0.16 -1.37 16 24 C -0.11 -1.41 7.09 31.55 0.22 -1.19 16 25 C -0.07 -1.02 6.77 30.48 0.21 -0.81 16 26 C -0.03 -0.99 9.65 22.47 0.22 -0.77 16 27 C -0.19 -7.30 9.98 22.36 0.22 -7.08 16 28 H 0.29 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.12 5.53 5.70 -2.91 -0.02 5.51 16 30 H 0.14 4.06 6.63 -2.91 -0.02 4.04 16 31 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.09 2.15 7.54 -2.38 -0.02 2.13 16 33 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.09 1.72 7.45 -2.39 -0.02 1.70 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 43 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -67.39 360.39 4.32 -63.07 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 1.04 Total: 22.64 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.64 Total: -31.24 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -3.14 Total: -87.99 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.18 Total: -12.41 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.96 Total: 45.92 kcal Total: -67.39 4.32 -63.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.758 kcal (2) G-P(sol) polarization free energy of solvation -67.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds