Wall clock time and date at job start Tue Mar 31 2020 13:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31542 * 1 3 3 Si 1.86802 * 119.99474 * 2 1 4 4 H 1.48503 * 109.46699 * 239.99379 * 3 2 1 5 5 H 1.48502 * 109.47474 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47178 * 119.99815 * 3 2 1 7 7 C 1.38672 * 120.00534 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00162 * 180.02562 * 7 2 1 9 9 O 1.34817 * 119.99503 * 0.02562 * 7 2 1 10 10 C 1.35662 * 116.99524 * 185.05441 * 9 7 2 11 11 C 1.39033 * 119.94534 * 354.44741 * 10 9 7 12 12 C 1.37786 * 120.06019 * 180.02562 * 11 10 9 13 13 C 1.39517 * 119.94144 * 359.97438 * 12 11 10 14 14 C 1.48181 * 120.05540 * 180.02562 * 13 12 11 15 15 C 1.39827 * 120.55481 * 180.02562 * 14 13 12 16 16 C 1.38282 * 118.28665 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.40117 * 179.97438 * 16 15 14 18 18 C 1.52996 * 117.49994 * 343.74267 * 17 16 15 19 19 C 1.52995 * 117.49841 * 275.08287 * 17 16 15 20 20 N 1.32470 * 119.19713 * 359.72718 * 16 15 14 21 21 C 1.31820 * 121.06632 * 0.54636 * 20 16 15 22 22 C 1.50706 * 119.05344 * 179.71557 * 21 20 16 23 23 C 1.53003 * 117.49407 * 119.73065 * 22 21 20 24 24 C 1.53000 * 60.02883 * 107.47976 * 23 22 21 25 25 N 1.31668 * 121.88755 * 359.44270 * 21 20 16 26 26 C 1.39505 * 119.88267 * 0.27005 * 13 12 11 27 27 C 1.37792 * 119.94911 * 359.47265 * 26 13 12 28 28 H 0.96997 * 120.00864 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.97283 * 359.97438 * 11 10 9 30 30 H 1.07994 * 120.03374 * 180.02562 * 12 11 10 31 31 H 1.07999 * 120.85845 * 359.97438 * 15 14 13 32 32 H 1.09000 * 115.55104 * 129.41665 * 17 16 15 33 33 H 1.09007 * 117.49660 * 0.02562 * 18 17 16 34 34 H 1.08999 * 117.49780 * 145.01575 * 18 17 16 35 35 H 1.09000 * 117.50378 * 214.97908 * 19 17 16 36 36 H 1.08999 * 117.50178 * 359.97438 * 19 17 16 37 37 H 1.08994 * 115.54929 * 334.06573 * 22 21 20 38 38 H 1.09001 * 117.49669 * 214.97262 * 23 22 21 39 39 H 1.08993 * 117.50274 * 359.97438 * 23 22 21 40 40 H 1.08999 * 117.50607 * 107.50326 * 24 23 22 41 41 H 1.09007 * 117.49783 * 252.52071 * 24 23 22 42 42 H 1.08001 * 120.02461 * 179.70077 * 26 13 12 43 43 H 1.07995 * 119.97436 * 180.22543 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 3.1031 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6966 1.2125 7 6 2.0089 -1.2009 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0697 -3.5037 0.1076 11 6 3.4583 -3.4355 0.0944 12 6 4.2070 -4.5871 0.2024 13 6 3.5704 -5.8225 0.3257 14 6 4.3731 -7.0626 0.4426 15 6 3.7460 -8.3063 0.5660 16 6 4.5405 -9.4331 0.6714 17 6 3.9148 -10.7974 0.8071 18 6 2.4382 -10.8612 1.2025 19 6 3.5190 -11.2565 2.2118 20 7 5.8582 -9.2994 0.6467 21 6 6.4194 -8.1120 0.5344 22 6 7.9231 -8.0118 0.5175 23 6 8.5766 -7.4043 -0.7254 24 6 8.5388 -6.6119 0.5829 25 7 5.7040 -7.0114 0.4312 26 6 2.1770 -5.8887 0.3334 27 6 1.4328 -4.7336 0.2305 28 1 -0.4851 0.8399 -0.0004 29 1 3.9506 -2.4790 -0.0014 30 1 5.2855 -4.5336 0.1926 31 1 2.6690 -8.3847 0.5787 32 1 4.2838 -11.5547 0.1155 33 1 1.9192 -9.9164 1.3641 34 1 1.8359 -11.6607 0.7712 35 1 3.6271 -12.3159 2.4443 36 1 3.7115 -10.5720 3.0380 37 1 8.4537 -8.8197 1.0211 38 1 9.5375 -7.8122 -1.0391 39 1 7.9191 -7.0775 -1.5310 40 1 9.4747 -6.4985 1.1299 41 1 7.8560 -5.7639 0.6382 42 1 1.6818 -6.8443 0.4238 43 1 0.3541 -4.7840 0.2401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243589593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:35 Heat of formation + Delta-G solvation = 80.346683 kcal Electronic energy + Delta-G solvation = -25363.290596 eV Core-core repulsion = 21761.281926 eV Total energy + Delta-G solvation = -3602.008669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26598 -40.80743 -38.68498 -38.53358 -37.39176 -34.83028 -34.21942 -32.85062 -31.90125 -30.20770 -27.54814 -26.66325 -25.71837 -23.87731 -23.55124 -23.25865 -23.18663 -21.93607 -20.94911 -19.93536 -19.04152 -18.63480 -17.88222 -16.80764 -16.61844 -16.37633 -16.14688 -16.07088 -15.80005 -15.61861 -15.50199 -15.08271 -14.95253 -14.55598 -14.22181 -13.61195 -13.49172 -13.38516 -12.91229 -12.77170 -12.71767 -12.61442 -12.40816 -12.39117 -12.23430 -12.16854 -11.78732 -11.74965 -11.49022 -11.31290 -11.22881 -11.07365 -10.79319 -10.27242 -10.17137 -9.93821 -8.92966 -8.53797 -6.20742 -0.47071 -0.06518 0.52386 0.86968 1.35224 1.45563 1.50891 2.14303 2.42434 2.59040 2.77403 2.82338 3.03619 3.09277 3.23385 3.29266 3.40250 3.84325 3.86138 3.90085 3.95647 4.00673 4.04721 4.10343 4.12551 4.20603 4.29201 4.44404 4.53202 4.56270 4.71136 4.77141 4.78391 4.86643 4.95669 5.00557 5.05488 5.11957 5.13603 5.20398 5.23016 5.29959 5.32915 5.52369 5.56194 5.60257 5.94507 5.99948 6.12134 6.90295 7.14717 7.64776 8.67777 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.002948 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.546003 B = 9495.834189 C =11291.261761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.015 4.015 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.419 4.419 8 H 0.105 0.895 9 O -0.215 6.215 10 C 0.139 3.861 11 C -0.249 4.249 12 C -0.019 4.019 13 C -0.159 4.159 14 C 0.236 3.764 15 C -0.239 4.239 16 C 0.207 3.793 17 C -0.128 4.128 18 C -0.157 4.157 19 C -0.154 4.154 20 N -0.541 5.541 21 C 0.343 3.657 22 C -0.113 4.113 23 C -0.145 4.145 24 C -0.149 4.149 25 N -0.542 5.542 26 C -0.028 4.028 27 C -0.201 4.201 28 H 0.276 0.724 29 H 0.126 0.874 30 H 0.133 0.867 31 H 0.168 0.832 32 H 0.133 0.867 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.140 0.860 38 H 0.129 0.871 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.089 0.911 42 H 0.160 0.840 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.576 -19.846 1.954 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.214 4.214 3 Si 0.836 3.164 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.122 0.878 9 O -0.119 6.119 10 C 0.086 3.914 11 C -0.268 4.268 12 C -0.038 4.038 13 C -0.161 4.161 14 C 0.094 3.906 15 C -0.260 4.260 16 C 0.062 3.938 17 C -0.147 4.147 18 C -0.194 4.194 19 C -0.192 4.192 20 N -0.256 5.256 21 C 0.076 3.924 22 C -0.133 4.133 23 C -0.184 4.184 24 C -0.187 4.187 25 N -0.257 5.257 26 C -0.047 4.047 27 C -0.220 4.220 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.186 0.814 32 H 0.151 0.849 33 H 0.120 0.880 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.102 0.898 37 H 0.158 0.842 38 H 0.147 0.853 39 H 0.097 0.903 40 H 0.143 0.857 41 H 0.108 0.892 42 H 0.178 0.822 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.123 -19.596 1.914 23.122 hybrid contribution -0.820 1.060 -0.085 1.343 sum 11.303 -18.536 1.829 21.788 Atomic orbital electron populations 1.70145 1.07993 1.29264 1.47416 1.26585 0.96819 1.02696 0.95342 0.84672 0.77505 0.74241 0.80024 1.18117 1.19445 1.18151 1.21855 0.92723 0.81215 1.53647 0.87804 1.83920 1.36055 1.12665 1.79262 1.20093 0.91303 0.88127 0.91901 1.21192 0.93185 0.99780 1.12667 1.21018 0.99835 0.90543 0.92450 1.18166 0.92639 0.90778 1.14501 1.20179 0.89068 0.92798 0.88554 1.22813 1.03839 0.92410 1.06958 1.21107 0.88423 0.95334 0.88939 1.20861 0.99111 0.92534 1.02197 1.23268 0.89645 1.04632 1.01833 1.23054 1.02127 1.03138 0.90833 1.67877 1.12855 1.27492 1.17424 1.22553 0.96862 0.83134 0.89878 1.20770 0.85446 1.00400 1.06698 1.23019 1.02327 1.02287 0.90723 1.23060 1.02541 0.92743 1.00353 1.68080 1.06920 1.33123 1.17622 1.21029 0.91671 0.97929 0.94063 1.20386 1.00567 0.89681 1.11411 0.91490 0.85618 0.84897 0.81428 0.84913 0.88020 0.85516 0.85952 0.89784 0.84182 0.85302 0.90311 0.85747 0.89202 0.82241 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.04 13.67 21.62 0.30 -53.75 16 2 C -0.02 -0.84 5.49 84.84 0.47 -0.37 16 3 Si 1.02 41.49 29.55 68.60 2.03 43.51 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.42 -23.61 9.48 67.92 0.64 -22.96 16 8 H 0.10 5.38 5.19 -2.91 -0.02 5.36 16 9 O -0.21 -12.40 9.75 -21.63 -0.21 -12.61 16 10 C 0.14 6.66 6.65 22.65 0.15 6.81 16 11 C -0.25 -10.86 9.15 22.35 0.20 -10.66 16 12 C -0.02 -0.73 9.58 22.47 0.22 -0.52 16 13 C -0.16 -5.52 5.88 -20.02 -0.12 -5.64 16 14 C 0.24 7.52 6.76 41.97 0.28 7.81 16 15 C -0.24 -6.25 8.79 22.67 0.20 -6.05 16 16 C 0.21 5.22 6.49 42.47 0.28 5.49 16 17 C -0.13 -2.26 6.24 -11.54 -0.07 -2.33 16 18 C -0.16 -1.98 9.83 30.62 0.30 -1.68 16 19 C -0.15 -2.17 10.24 30.62 0.31 -1.86 16 20 N -0.54 -15.40 10.26 -176.24 -1.81 -17.21 16 21 C 0.34 10.01 7.31 138.78 1.01 11.03 16 22 C -0.11 -2.53 6.24 -11.51 -0.07 -2.60 16 23 C -0.15 -2.75 10.23 30.60 0.31 -2.44 16 24 C -0.15 -2.95 10.01 30.62 0.31 -2.65 16 25 N -0.54 -17.39 8.49 -177.02 -1.50 -18.90 16 26 C -0.03 -0.91 9.43 22.47 0.21 -0.70 16 27 C -0.20 -8.04 9.98 22.36 0.22 -7.82 16 28 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.13 5.52 5.62 -2.91 -0.02 5.51 16 30 H 0.13 4.67 7.57 -2.91 -0.02 4.65 16 31 H 0.17 3.43 4.64 -2.91 -0.01 3.42 16 32 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.10 1.31 6.46 -2.38 -0.02 1.29 16 34 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.13 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.09 2.20 7.54 -2.38 -0.02 2.18 16 42 H 0.16 3.78 6.27 -2.91 -0.02 3.76 16 43 H 0.13 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -70.18 365.64 4.71 -65.47 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 1.05 Total: 30.61 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 4.86 Total: -37.13 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -3.02 Total: -89.85 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.21 Total: -12.61 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -70.18 4.71 -65.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.812 kcal (2) G-P(sol) polarization free energy of solvation -70.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds