Wall clock time and date at job start Tue Mar 31 2020 13:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35846 * 117.00253 * 2 1 4 4 C 1.39491 * 119.77169 * 0.28658 * 3 2 1 5 5 C 1.37905 * 120.63094 * 180.26208 * 4 3 2 6 6 C 1.39277 * 120.16112 * 359.44536 * 5 4 3 7 7 C 1.47618 * 120.22958 * 180.25248 * 6 5 4 8 8 C 1.39933 * 119.92249 * 130.00450 * 7 6 5 9 9 C 1.36479 * 119.80357 * 180.02562 * 8 7 6 10 10 C 1.40096 * 119.98547 * 359.93448 * 9 8 7 11 11 C 1.39873 * 120.38224 * 359.94487 * 10 9 8 12 12 C 1.36930 * 119.41287 * 359.89225 * 11 10 9 13 13 C 1.50459 * 121.58820 * 180.30653 * 11 10 9 14 14 C 1.52625 * 111.24380 * 337.40900 * 13 11 10 15 15 C 1.53439 * 109.34870 * 54.59244 * 14 13 11 16 16 C 1.47374 * 119.56162 * 179.75863 * 10 9 8 17 17 O 1.21298 * 121.15523 * 348.76699 * 16 10 9 18 18 C 1.41998 * 119.54352 * 0.28063 * 6 5 4 19 19 C 1.40823 * 120.30224 * 180.02562 * 18 6 5 20 20 H 1.07994 * 120.00159 * 332.94145 * 19 18 6 21 21 C 1.40157 * 119.99823 * 152.95272 * 19 18 6 22 22 N 1.30720 * 120.00005 * 344.49992 * 21 19 18 23 23 Si 1.86799 * 120.00323 * 164.49624 * 21 19 18 24 24 H 1.48501 * 109.46681 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47241 * 119.99607 * 23 21 19 26 26 H 1.48501 * 109.47102 * 240.00096 * 23 21 19 27 27 C 1.37973 * 119.77011 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47123 * 60.00271 * 1 2 3 29 29 H 1.08993 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47088 * 300.00398 * 1 2 3 31 31 H 1.08002 * 119.68435 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.91764 * 179.72402 * 5 4 3 33 33 H 1.08005 * 120.09843 * 0.05065 * 8 7 6 34 34 H 1.08003 * 120.00917 * 179.97438 * 9 8 7 35 35 H 1.07998 * 119.87135 * 180.11493 * 12 11 10 36 36 H 1.09002 * 109.12073 * 216.95321 * 13 11 10 37 37 H 1.09000 * 109.07598 * 97.83564 * 13 11 10 38 38 H 1.08998 * 109.49266 * 294.62793 * 14 13 11 39 39 H 1.09003 * 109.48707 * 174.55553 * 14 13 11 40 40 H 1.09002 * 109.86988 * 176.46598 * 15 14 13 41 41 H 1.09001 * 109.87259 * 55.40650 * 15 14 13 42 42 H 0.96997 * 120.00309 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.09258 * 0.03800 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2814 2.3772 0.0061 5 6 1.8890 3.6152 0.0007 6 6 3.2783 3.7128 0.0009 7 6 3.9303 5.0372 0.0008 8 6 4.9380 5.3192 0.9298 9 6 5.5388 6.5447 0.9280 10 6 5.1469 7.5151 -0.0033 11 6 4.1418 7.2362 -0.9352 12 6 3.5444 6.0041 -0.9315 13 6 3.7045 8.2558 -1.9517 14 6 4.0410 9.6724 -1.4941 15 6 5.5375 9.7589 -1.1666 16 6 5.7982 8.8371 0.0064 17 8 6.5184 9.1751 0.9220 18 6 4.0634 2.5296 0.0005 19 6 5.4693 2.6097 0.0011 20 1 5.9613 3.4722 -0.4236 21 6 6.2302 1.5699 0.5527 22 7 5.6613 0.6833 1.3268 23 14 8.0571 1.4509 0.1818 24 1 8.4540 2.5669 -0.7138 25 1 8.8261 1.5353 1.4493 26 1 8.3433 0.1555 -0.4855 27 6 3.4238 1.2770 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2034 2.3105 0.0111 32 1 1.2860 4.5112 0.0010 33 1 5.2397 4.5692 1.6461 34 1 6.3166 6.7660 1.6438 35 1 2.7688 5.7802 -1.6489 36 1 2.6275 8.1742 -2.0987 37 1 4.2099 8.0561 -2.8966 38 1 3.4594 9.9151 -0.6048 39 1 3.8014 10.3780 -2.2896 40 1 5.7997 10.7825 -0.8989 41 1 6.1244 9.4381 -2.0273 42 1 6.1879 -0.0361 1.7089 43 1 4.0098 0.3698 -0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243990911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:22 Heat of formation + Delta-G solvation = -50.324678 kcal Electronic energy + Delta-G solvation = -26259.902779 eV Core-core repulsion = 22619.935023 eV Total energy + Delta-G solvation = -3639.967756 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.11153 -38.89905 -37.92746 -36.48830 -35.13781 -33.73045 -31.23207 -30.83012 -29.84838 -28.29904 -27.78541 -26.31265 -25.33141 -23.04571 -22.74305 -21.32749 -20.78098 -20.12228 -18.57205 -17.84579 -16.41242 -16.24934 -15.86178 -15.44921 -15.21333 -14.90803 -14.79071 -14.66640 -14.25650 -13.89345 -13.52292 -13.34057 -13.09193 -13.04827 -12.88656 -12.59566 -12.31755 -11.90513 -11.86620 -11.56354 -11.47660 -11.29325 -11.18677 -11.10180 -11.05688 -10.85745 -10.53349 -10.45293 -10.09526 -9.93822 -9.65713 -9.32274 -9.27180 -8.38069 -8.14557 -7.62788 -7.04325 -6.75339 -4.55956 1.06754 1.98801 2.52021 2.68860 3.01475 3.03096 3.06976 3.10855 3.82065 4.21254 4.27516 4.32661 4.47034 4.75314 4.78821 4.93860 5.25487 5.34608 5.44603 5.53568 5.56641 5.58484 5.65999 5.66522 5.73914 5.82114 5.85901 5.88784 6.00748 6.03968 6.11417 6.17572 6.24069 6.45545 6.58213 6.70027 6.83892 6.87977 7.00898 7.06521 7.26911 7.30719 7.47329 7.56789 7.68203 7.78680 7.83626 7.91284 8.23176 8.60165 8.67645 8.75834 9.98754 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.004396 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.519539 B = 6367.855654 C = 8361.882135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.136 3.864 4 C -0.316 4.316 5 C -0.034 4.034 6 C -0.220 4.220 7 C 0.070 3.930 8 C -0.119 4.119 9 C -0.062 4.062 10 C -0.208 4.208 11 C -0.032 4.032 12 C -0.152 4.152 13 C -0.085 4.085 14 C -0.111 4.111 15 C -0.164 4.164 16 C 0.402 3.598 17 O -0.472 6.472 18 C 0.159 3.841 19 C -0.444 4.444 20 H 0.087 0.913 21 C 0.077 3.923 22 N -0.775 5.775 23 Si 0.905 3.095 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.270 1.270 27 C -0.192 4.192 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.285 0.715 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 8.418 -5.144 10.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.092 3.908 4 C -0.336 4.336 5 C -0.053 4.053 6 C -0.222 4.222 7 C 0.070 3.930 8 C -0.137 4.137 9 C -0.080 4.080 10 C -0.209 4.209 11 C -0.033 4.033 12 C -0.170 4.170 13 C -0.122 4.122 14 C -0.148 4.148 15 C -0.202 4.202 16 C 0.283 3.717 17 O -0.350 6.350 18 C 0.156 3.844 19 C -0.472 4.472 20 H 0.105 0.895 21 C -0.144 4.144 22 N -0.398 5.398 23 Si 0.729 3.271 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.195 1.195 27 C -0.212 4.212 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.661 8.196 -4.518 10.050 hybrid contribution 0.429 -0.199 -0.096 0.483 sum -3.232 7.998 -4.614 9.783 Atomic orbital electron populations 1.22772 0.80643 1.01977 1.00567 1.86004 1.19616 1.29041 1.89623 1.19039 0.92469 0.82546 0.96717 1.20372 0.97451 0.92447 1.23342 1.20351 0.93135 0.95367 0.96418 1.18568 0.92200 0.91077 1.20333 1.19047 0.91334 0.92141 0.90484 1.21226 0.96686 0.96102 0.99696 1.20997 0.98089 0.92746 0.96152 1.20005 1.02844 0.96323 1.01713 1.19552 0.94629 0.94663 0.94409 1.20959 1.02589 0.93087 1.00398 1.20461 1.01760 0.92506 0.97430 1.21472 0.94493 0.96948 1.01914 1.22293 0.98425 1.00454 0.99042 1.22649 0.76758 0.86801 0.85541 1.90494 1.31801 1.76345 1.36313 1.17203 0.92730 0.88818 0.85681 1.19649 0.90972 1.03817 1.32782 0.89456 1.26004 1.01515 0.94150 0.92729 1.69779 1.38711 1.11040 1.20280 0.86284 0.81623 0.79646 0.79572 1.18062 1.19667 1.19468 1.20542 0.89355 0.99102 1.12230 0.93642 0.89836 0.93591 0.88418 0.88729 0.84652 0.85978 0.86207 0.90316 0.90186 0.91371 0.90681 0.89442 0.88331 0.90411 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.55 16 2 O -0.33 -6.95 10.48 -19.26 -0.20 -7.15 16 3 C 0.14 3.16 6.68 -39.21 -0.26 2.89 16 4 C -0.32 -6.70 9.02 -39.24 -0.35 -7.05 16 5 C -0.03 -0.72 9.48 -39.32 -0.37 -1.09 16 6 C -0.22 -4.96 5.51 -104.24 -0.57 -5.53 16 7 C 0.07 1.42 4.92 -104.87 -0.52 0.90 16 8 C -0.12 -2.39 7.93 -39.58 -0.31 -2.70 16 9 C -0.06 -1.13 9.54 -39.52 -0.38 -1.51 16 10 C -0.21 -3.49 5.83 -104.87 -0.61 -4.10 16 11 C -0.03 -0.49 5.75 -104.60 -0.60 -1.09 16 12 C -0.15 -2.63 9.05 -39.49 -0.36 -2.99 16 13 C -0.08 -0.94 5.69 -28.19 -0.16 -1.10 16 14 C -0.11 -1.07 5.90 -26.70 -0.16 -1.23 16 15 C -0.16 -1.81 6.18 -27.29 -0.17 -1.98 16 16 C 0.40 6.25 6.88 -30.23 -0.21 6.04 16 17 O -0.47 -8.67 17.24 5.54 0.10 -8.58 16 18 C 0.16 3.94 5.55 -106.57 -0.59 3.34 16 19 C -0.44 -10.85 7.08 -37.89 -0.27 -11.12 16 20 H 0.09 2.11 6.64 -52.49 -0.35 1.76 16 21 C 0.08 1.81 5.17 -17.30 -0.09 1.72 16 22 N -0.77 -18.96 10.99 55.56 0.61 -18.35 16 23 Si 0.90 17.94 29.59 -169.99 -5.03 12.91 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 27 C -0.19 -4.85 8.59 -38.77 -0.33 -5.19 16 28 H 0.04 0.64 7.66 -51.93 -0.40 0.25 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.67 7.63 -51.93 -0.40 0.27 16 31 H 0.10 1.81 6.25 -52.49 -0.33 1.48 16 32 H 0.09 1.74 8.04 -52.49 -0.42 1.32 16 33 H 0.14 2.88 7.29 -52.48 -0.38 2.49 16 34 H 0.12 2.16 7.70 -52.48 -0.40 1.76 16 35 H 0.12 1.90 8.03 -52.49 -0.42 1.48 16 36 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 43 H 0.13 3.37 6.26 -52.49 -0.33 3.04 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -27.98 354.89 -10.02 -38.01 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.52 Total: 8.05 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: -5.33 Total: -30.24 kcal Atomic # 7 Polarization: -18.96 SS G_CDS: 0.61 Total: -18.35 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.11 Total: -15.73 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.98 -10.02 -38.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243990911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.319 kcal (2) G-P(sol) polarization free energy of solvation -27.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds