Wall clock time and date at job start Tue Mar 31 2020 13:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35846 * 117.00253 * 2 1 4 4 C 1.39491 * 119.77169 * 0.28658 * 3 2 1 5 5 C 1.37905 * 120.63094 * 180.26208 * 4 3 2 6 6 C 1.39277 * 120.16112 * 359.44536 * 5 4 3 7 7 C 1.47618 * 120.22958 * 180.25248 * 6 5 4 8 8 C 1.39933 * 119.92249 * 130.00450 * 7 6 5 9 9 C 1.36479 * 119.80357 * 180.02562 * 8 7 6 10 10 C 1.40096 * 119.98547 * 359.93448 * 9 8 7 11 11 C 1.39873 * 120.38224 * 359.94487 * 10 9 8 12 12 C 1.36930 * 119.41287 * 359.89225 * 11 10 9 13 13 C 1.50459 * 121.58820 * 180.30653 * 11 10 9 14 14 C 1.52625 * 111.24380 * 337.40900 * 13 11 10 15 15 C 1.53439 * 109.34870 * 54.59244 * 14 13 11 16 16 C 1.47374 * 119.56162 * 179.75863 * 10 9 8 17 17 O 1.21298 * 121.15523 * 348.76699 * 16 10 9 18 18 C 1.41998 * 119.54352 * 0.28063 * 6 5 4 19 19 C 1.40823 * 120.30224 * 180.02562 * 18 6 5 20 20 H 1.07994 * 120.00159 * 332.94145 * 19 18 6 21 21 C 1.40157 * 119.99823 * 152.95272 * 19 18 6 22 22 N 1.30720 * 120.00005 * 344.49992 * 21 19 18 23 23 Si 1.86799 * 120.00323 * 164.49624 * 21 19 18 24 24 H 1.48501 * 109.46681 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47241 * 119.99607 * 23 21 19 26 26 H 1.48501 * 109.47102 * 240.00096 * 23 21 19 27 27 C 1.37973 * 119.77011 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47123 * 60.00271 * 1 2 3 29 29 H 1.08993 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47088 * 300.00398 * 1 2 3 31 31 H 1.08002 * 119.68435 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.91764 * 179.72402 * 5 4 3 33 33 H 1.08005 * 120.09843 * 0.05065 * 8 7 6 34 34 H 1.08003 * 120.00917 * 179.97438 * 9 8 7 35 35 H 1.07998 * 119.87135 * 180.11493 * 12 11 10 36 36 H 1.09002 * 109.12073 * 216.95321 * 13 11 10 37 37 H 1.09000 * 109.07598 * 97.83564 * 13 11 10 38 38 H 1.08998 * 109.49266 * 294.62793 * 14 13 11 39 39 H 1.09003 * 109.48707 * 174.55553 * 14 13 11 40 40 H 1.09002 * 109.86988 * 176.46598 * 15 14 13 41 41 H 1.09001 * 109.87259 * 55.40650 * 15 14 13 42 42 H 0.96997 * 120.00309 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.09258 * 0.03800 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2814 2.3772 0.0061 5 6 1.8890 3.6152 0.0007 6 6 3.2783 3.7128 0.0009 7 6 3.9303 5.0372 0.0008 8 6 4.9380 5.3192 0.9298 9 6 5.5388 6.5447 0.9280 10 6 5.1469 7.5151 -0.0033 11 6 4.1418 7.2362 -0.9352 12 6 3.5444 6.0041 -0.9315 13 6 3.7045 8.2558 -1.9517 14 6 4.0410 9.6724 -1.4941 15 6 5.5375 9.7589 -1.1666 16 6 5.7982 8.8371 0.0064 17 8 6.5184 9.1751 0.9220 18 6 4.0634 2.5296 0.0005 19 6 5.4693 2.6097 0.0011 20 1 5.9613 3.4722 -0.4236 21 6 6.2302 1.5699 0.5527 22 7 5.6613 0.6833 1.3268 23 14 8.0571 1.4509 0.1818 24 1 8.4540 2.5669 -0.7138 25 1 8.8261 1.5353 1.4493 26 1 8.3433 0.1555 -0.4855 27 6 3.4238 1.2770 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2034 2.3105 0.0111 32 1 1.2860 4.5112 0.0010 33 1 5.2397 4.5692 1.6461 34 1 6.3166 6.7660 1.6438 35 1 2.7688 5.7802 -1.6489 36 1 2.6275 8.1742 -2.0987 37 1 4.2099 8.0561 -2.8966 38 1 3.4594 9.9151 -0.6048 39 1 3.8014 10.3780 -2.2896 40 1 5.7997 10.7825 -0.8989 41 1 6.1244 9.4381 -2.0273 42 1 6.1879 -0.0361 1.7089 43 1 4.0098 0.3698 -0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243990911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:22 Heat of formation + Delta-G solvation = -63.121895 kcal Electronic energy + Delta-G solvation = -26260.457708 eV Core-core repulsion = 22619.935023 eV Total energy + Delta-G solvation = -3640.522685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40172 -40.51039 -39.34840 -38.00781 -36.29185 -35.47633 -32.70859 -32.15390 -31.53089 -29.77872 -28.93337 -27.70211 -27.03395 -24.44847 -23.89237 -22.86118 -22.22196 -21.64073 -19.78749 -19.55372 -18.00035 -17.72399 -17.15653 -16.83527 -16.75815 -16.37256 -16.35453 -15.89052 -15.43436 -15.19124 -14.98162 -14.70778 -14.50908 -14.31189 -14.22208 -14.09450 -13.73019 -13.53427 -13.12430 -12.94751 -12.87089 -12.83979 -12.66667 -12.52898 -12.16897 -11.97132 -11.92655 -11.73676 -11.64458 -11.55317 -11.32533 -11.05584 -10.49881 -9.81754 -9.56314 -9.41105 -8.80029 -8.45983 -6.39825 -0.31109 0.58780 0.89440 1.01325 1.34158 1.45822 1.47811 1.58541 2.14895 2.65189 2.76219 2.91707 3.18226 3.63132 3.77734 3.86512 3.99009 4.13416 4.20216 4.31567 4.33181 4.47054 4.49795 4.50014 4.54171 4.57398 4.68436 4.74822 4.81544 4.92996 4.95362 5.02865 5.05859 5.13449 5.17125 5.24769 5.28894 5.35861 5.48277 5.52199 5.57036 5.76356 5.85985 5.89640 6.04799 6.13281 6.16197 6.45103 6.57184 6.85241 6.88027 7.01031 8.25020 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011377 B = 0.004396 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.519539 B = 6367.855654 C = 8361.882135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.132 3.868 4 C -0.312 4.312 5 C -0.037 4.037 6 C -0.226 4.226 7 C 0.045 3.955 8 C -0.135 4.135 9 C -0.073 4.073 10 C -0.215 4.215 11 C -0.017 4.017 12 C -0.149 4.149 13 C -0.085 4.085 14 C -0.105 4.105 15 C -0.156 4.156 16 C 0.400 3.600 17 O -0.508 6.508 18 C 0.133 3.867 19 C -0.467 4.467 20 H 0.079 0.921 21 C 0.040 3.960 22 N -0.811 5.811 23 Si 0.968 3.032 24 H -0.259 1.259 25 H -0.266 1.266 26 H -0.262 1.262 27 C -0.228 4.228 28 H 0.060 0.940 29 H 0.115 0.885 30 H 0.054 0.946 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.289 0.711 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.861 11.242 -7.457 14.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.266 6.266 3 C 0.087 3.913 4 C -0.332 4.332 5 C -0.055 4.055 6 C -0.227 4.227 7 C 0.045 3.955 8 C -0.153 4.153 9 C -0.092 4.092 10 C -0.216 4.216 11 C -0.017 4.017 12 C -0.167 4.167 13 C -0.122 4.122 14 C -0.142 4.142 15 C -0.193 4.193 16 C 0.282 3.718 17 O -0.387 6.387 18 C 0.130 3.870 19 C -0.495 4.495 20 H 0.097 0.903 21 C -0.177 4.177 22 N -0.436 5.436 23 Si 0.789 3.211 24 H -0.182 1.182 25 H -0.191 1.191 26 H -0.187 1.187 27 C -0.248 4.248 28 H 0.079 0.921 29 H 0.133 0.867 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.137 0.863 42 H 0.100 0.900 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.382 11.016 -6.838 14.039 hybrid contribution 0.798 -0.997 0.627 1.423 sum -4.584 10.020 -6.211 12.648 Atomic orbital electron populations 1.23162 0.77478 1.04582 1.01631 1.85970 1.22909 1.28357 1.89361 1.19157 0.92130 0.84040 0.95956 1.20718 0.98973 0.91656 1.21830 1.20719 0.92774 0.96623 0.95389 1.18879 0.93106 0.91479 1.19236 1.19074 0.92159 0.92189 0.92093 1.20984 0.97850 0.96288 1.00163 1.21036 0.98231 0.92851 0.97044 1.20407 1.03146 0.96821 1.01182 1.20039 0.92617 0.94979 0.94094 1.21162 1.02859 0.93004 0.99688 1.20641 1.03313 0.91791 0.96449 1.21516 0.92908 0.96747 1.03073 1.22352 1.00046 0.99859 0.97078 1.23297 0.75360 0.86679 0.86479 1.90487 1.33236 1.76860 1.38166 1.17519 0.93404 0.89718 0.86335 1.19685 0.91431 1.04267 1.34147 0.90276 1.26713 1.05282 0.93570 0.92149 1.69844 1.40272 1.11953 1.21555 0.85351 0.76798 0.79562 0.79371 1.18248 1.19093 1.18670 1.20467 0.90645 0.98462 1.15255 0.92148 0.86691 0.92730 0.85173 0.85541 0.87570 0.86439 0.84216 0.88115 0.88028 0.91871 0.86757 0.87832 0.86275 0.89996 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.80 113.37 1.11 1.86 16 2 O -0.35 -14.94 10.48 -91.82 -0.96 -15.90 16 3 C 0.13 6.22 6.68 22.51 0.15 6.37 16 4 C -0.31 -12.89 9.02 22.49 0.20 -12.68 16 5 C -0.04 -1.52 9.48 22.44 0.21 -1.31 16 6 C -0.23 -10.42 5.51 -19.62 -0.11 -10.53 16 7 C 0.05 1.86 4.92 -20.03 -0.10 1.76 16 8 C -0.13 -5.73 7.93 22.27 0.18 -5.55 16 9 C -0.07 -2.81 9.54 22.31 0.21 -2.59 16 10 C -0.21 -7.00 5.83 -20.03 -0.12 -7.11 16 11 C -0.02 -0.47 5.75 -19.85 -0.11 -0.59 16 12 C -0.15 -4.90 9.05 22.33 0.20 -4.70 16 13 C -0.09 -1.45 5.69 29.65 0.17 -1.28 16 14 C -0.11 -1.45 5.90 30.62 0.18 -1.27 16 15 C -0.16 -2.77 6.18 30.23 0.19 -2.58 16 16 C 0.40 11.70 6.88 28.33 0.19 11.89 16 17 O -0.51 -18.41 17.24 -3.09 -0.05 -18.46 16 18 C 0.13 6.99 5.55 -21.13 -0.12 6.87 16 19 C -0.47 -24.42 7.08 23.37 0.17 -24.25 16 20 H 0.08 4.11 6.64 -2.91 -0.02 4.09 16 21 C 0.04 2.00 5.17 85.32 0.44 2.44 16 22 N -0.81 -42.58 10.99 21.86 0.24 -42.34 16 23 Si 0.97 38.77 29.59 68.60 2.03 40.80 16 24 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 25 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 26 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 27 C -0.23 -12.21 8.59 22.79 0.20 -12.01 16 28 H 0.06 1.55 7.66 -2.39 -0.02 1.54 16 29 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.05 1.47 7.63 -2.39 -0.02 1.45 16 31 H 0.13 4.43 6.25 -2.91 -0.02 4.41 16 32 H 0.13 4.31 8.04 -2.91 -0.02 4.29 16 33 H 0.11 5.01 7.29 -2.91 -0.02 4.99 16 34 H 0.12 4.45 7.70 -2.91 -0.02 4.43 16 35 H 0.14 4.00 8.03 -2.91 -0.02 3.97 16 36 H 0.10 1.37 8.10 -2.39 -0.02 1.35 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.29 13.79 8.29 -92.71 -0.77 13.02 16 43 H 0.10 5.78 6.26 -2.91 -0.02 5.76 16 Total: -1.00 -67.00 354.89 5.53 -61.47 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 1.03 Total: 29.72 kcal Atomic # 6 Polarization: -58.53 SS G_CDS: 3.25 Total: -55.28 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.24 Total: -42.34 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.02 Total: -34.36 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -67.00 5.53 -61.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243990911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.654 kcal (2) G-P(sol) polarization free energy of solvation -67.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds