Wall clock time and date at job start Tue Mar 31 2020 12:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47003 * 2 1 4 4 C 1.34928 * 116.99649 * 180.02562 * 3 2 1 5 5 O 1.21637 * 119.99949 * 0.02562 * 4 3 2 6 6 C 1.46172 * 119.99872 * 180.02562 * 4 3 2 7 7 C 1.35109 * 119.99707 * 180.02562 * 6 4 3 8 8 C 1.46940 * 119.99747 * 179.97438 * 7 6 4 9 9 C 1.40088 * 120.02589 * 179.97438 * 8 7 6 10 10 C 1.36508 * 119.97003 * 180.02562 * 9 8 7 11 11 C 1.39861 * 120.02798 * 0.26328 * 10 9 8 12 12 C 1.47762 * 119.97156 * 179.74302 * 11 10 9 13 13 C 1.40055 * 119.89263 * 359.71934 * 12 11 10 14 14 C 1.36187 * 120.11713 * 179.75757 * 13 12 11 15 15 C 1.40987 * 119.88280 * 0.52096 * 14 13 12 16 16 C 1.40935 * 120.11036 * 179.71506 * 15 14 13 17 17 H 1.07994 * 119.99989 * 155.02486 * 16 15 14 18 18 C 1.40095 * 119.99532 * 335.02271 * 16 15 14 19 19 N 1.30735 * 120.00437 * 342.15272 * 18 16 15 20 20 Si 1.86807 * 119.99518 * 162.15062 * 18 16 15 21 21 H 1.48495 * 109.47187 * 94.65745 * 20 18 16 22 22 H 1.48497 * 109.46865 * 214.65411 * 20 18 16 23 23 H 1.48497 * 109.47009 * 334.65488 * 20 18 16 24 24 C 1.40985 * 119.78092 * 359.73187 * 15 14 13 25 25 C 1.36189 * 119.88355 * 0.02562 * 24 15 14 26 26 C 1.39857 * 120.05713 * 359.47994 * 11 10 9 27 27 C 1.36512 * 120.02614 * 0.51741 * 26 11 10 28 28 H 1.09005 * 109.46903 * 299.99898 * 1 2 3 29 29 H 1.09000 * 109.46837 * 59.99709 * 1 2 3 30 30 H 1.09000 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46903 * 240.00102 * 2 1 3 32 32 H 1.09000 * 109.46837 * 120.00291 * 2 1 3 33 33 H 1.08002 * 119.99899 * 359.97438 * 6 4 3 34 34 H 1.08001 * 120.00270 * 359.97438 * 7 6 4 35 35 H 1.08005 * 120.01929 * 0.04463 * 9 8 7 36 36 H 1.07998 * 119.98916 * 179.97438 * 10 9 8 37 37 H 1.08006 * 119.94161 * 0.02562 * 13 12 11 38 38 H 1.08000 * 120.05890 * 180.25162 * 14 13 12 39 39 H 0.97004 * 120.00295 * 180.02562 * 19 18 16 40 40 H 1.08001 * 120.05615 * 180.02562 * 24 15 14 41 41 H 1.07999 * 119.94044 * 179.97438 * 25 24 15 42 42 H 1.07999 * 119.99024 * 180.23643 * 26 11 10 43 43 H 1.07999 * 120.01518 * 179.72133 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3440 1.5240 -0.0005 5 8 4.0849 0.5593 -0.0015 6 6 3.9027 2.8747 0.0000 7 6 5.2422 3.0516 -0.0011 8 6 5.8038 4.4095 -0.0011 9 6 7.1926 4.5936 -0.0017 10 6 7.7131 5.8555 -0.0012 11 6 6.8607 6.9643 0.0055 12 6 7.4255 8.3297 0.0117 13 6 8.8143 8.5105 0.0170 14 6 9.3398 9.7669 0.0178 15 6 8.4832 10.8866 0.0244 16 6 9.0219 12.1889 0.0314 17 1 8.4447 13.0141 -0.3586 18 6 10.3062 12.4129 0.5443 19 7 10.8650 11.5213 1.3201 20 14 11.2203 13.9856 0.1194 21 1 10.9956 14.9927 1.1873 22 1 12.6730 13.6988 0.0073 23 1 10.7191 14.5154 -1.1741 24 6 7.0858 10.6993 0.0245 25 6 6.5702 9.4388 0.0187 26 6 5.4740 6.7818 0.0006 27 6 4.9510 5.5209 0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2448 3.7312 0.0004 34 1 5.9000 2.1951 -0.0019 35 1 7.8511 3.7376 -0.0028 36 1 8.7837 5.9978 -0.0012 37 1 9.4697 7.6520 0.0160 38 1 10.4109 9.9052 0.0177 39 1 11.7541 11.6765 1.6756 40 1 6.4255 11.5539 0.0292 41 1 5.5000 9.2942 0.0192 42 1 4.8168 7.6388 0.0019 43 1 3.8802 5.3802 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245127695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:50 Heat of formation + Delta-G solvation = -41.582419 kcal Electronic energy + Delta-G solvation = -24068.465792 eV Core-core repulsion = 20428.877129 eV Total energy + Delta-G solvation = -3639.588663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.51110 -39.22055 -37.56064 -36.87476 -34.56997 -33.57273 -31.97584 -31.10080 -30.83213 -29.52913 -28.57776 -25.95310 -24.35382 -23.07078 -22.73399 -21.76861 -20.53103 -20.28374 -19.26150 -18.04725 -17.63081 -16.74670 -16.60989 -16.33915 -15.44833 -15.14320 -14.66528 -14.30014 -14.28033 -13.71613 -13.55454 -13.38990 -13.13175 -12.97464 -12.88323 -12.85330 -12.31809 -12.24755 -12.18282 -11.97752 -11.77952 -11.57052 -11.34181 -11.17315 -10.91973 -10.68873 -10.65267 -10.62764 -10.54820 -10.17175 -9.91744 -9.53444 -9.38040 -8.73732 -8.39168 -7.77885 -7.17998 -7.01330 -4.57683 0.45724 1.77844 1.84455 2.62819 2.65232 2.90047 2.91212 2.96250 2.96865 3.22374 3.68742 4.15631 4.55574 4.60874 4.64790 4.76526 4.86157 4.98732 5.11333 5.18767 5.27720 5.42115 5.47343 5.50224 5.56937 5.66479 5.70241 5.72694 6.01322 6.03701 6.14021 6.22892 6.32286 6.41331 6.41700 6.70294 6.72844 6.78801 6.85021 6.86346 7.02621 7.20529 7.31127 7.37100 7.70194 7.72969 7.78809 7.92898 7.99529 8.33657 8.55129 8.68719 9.81280 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.045132 B = 0.001747 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.248679 B =16026.861581 C =16551.933730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.502 3.498 5 O -0.525 6.525 6 C -0.242 4.242 7 C 0.034 3.966 8 C -0.153 4.153 9 C -0.067 4.067 10 C -0.159 4.159 11 C 0.057 3.943 12 C -0.220 4.220 13 C -0.068 4.068 14 C -0.174 4.174 15 C 0.121 3.879 16 C -0.437 4.437 17 H 0.085 0.915 18 C 0.072 3.928 19 N -0.769 5.769 20 Si 0.913 3.087 21 H -0.267 1.267 22 H -0.272 1.272 23 H -0.257 1.257 24 C -0.231 4.231 25 C -0.055 4.055 26 C -0.161 4.161 27 C -0.071 4.071 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.287 0.713 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.337 -12.780 -1.684 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.270 6.270 4 C 0.350 3.650 5 O -0.416 6.416 6 C -0.260 4.260 7 C 0.016 3.984 8 C -0.153 4.153 9 C -0.085 4.085 10 C -0.177 4.177 11 C 0.057 3.943 12 C -0.221 4.221 13 C -0.087 4.087 14 C -0.193 4.193 15 C 0.117 3.883 16 C -0.464 4.464 17 H 0.103 0.897 18 C -0.149 4.149 19 N -0.392 5.392 20 Si 0.736 3.264 21 H -0.192 1.192 22 H -0.197 1.197 23 H -0.180 1.180 24 C -0.251 4.251 25 C -0.073 4.073 26 C -0.179 4.179 27 C -0.089 4.089 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.141 0.859 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.930 -13.116 -1.527 16.522 hybrid contribution 0.478 0.490 -0.001 0.685 sum -9.452 -12.626 -1.529 15.846 Atomic orbital electron populations 1.21809 0.92668 1.02856 1.03550 1.22602 0.95367 0.81087 1.02335 1.86199 1.24507 1.31792 1.84476 1.21343 0.80204 0.90800 0.72617 1.90852 1.60219 1.43196 1.47365 1.21955 0.96024 0.93291 1.14770 1.22466 0.94357 0.96235 0.85375 1.18661 0.93562 0.91561 1.11499 1.20924 0.93607 0.97241 0.96719 1.20920 1.00078 0.91728 1.05018 1.19273 0.92387 0.93294 0.89338 1.18093 0.93242 0.89999 1.20808 1.20566 0.93276 0.96619 0.98216 1.20993 0.99924 0.91253 1.07161 1.17792 0.91029 0.93411 0.86019 1.19821 0.98955 0.94803 1.32797 0.89685 1.26104 0.97398 0.98881 0.92524 1.69781 1.15075 1.34408 1.19942 0.86201 0.78804 0.80916 0.80440 1.19179 1.19662 1.18047 1.20703 0.95070 0.95402 1.13888 1.20455 0.97047 0.92624 0.97174 1.20901 0.94906 0.96803 1.05241 1.20980 0.98929 0.92111 0.96875 0.91465 0.91475 0.90385 0.91634 0.91631 0.84351 0.85228 0.86328 0.85807 0.88783 0.86335 0.90131 0.88543 0.88713 0.85908 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.55 6.10 37.16 0.23 0.78 16 3 O -0.35 -4.16 10.12 -41.12 -0.42 -4.57 16 4 C 0.50 6.65 7.87 33.91 0.27 6.92 16 5 O -0.52 -8.12 16.01 -19.37 -0.31 -8.43 16 6 C -0.24 -2.94 9.53 -37.51 -0.36 -3.30 16 7 C 0.03 0.43 9.45 -37.17 -0.35 0.08 16 8 C -0.15 -2.14 5.87 -104.98 -0.62 -2.76 16 9 C -0.07 -0.96 9.73 -39.51 -0.38 -1.35 16 10 C -0.16 -2.63 9.36 -39.60 -0.37 -3.00 16 11 C 0.06 1.05 5.89 -104.79 -0.62 0.43 16 12 C -0.22 -4.63 5.90 -104.64 -0.62 -5.25 16 13 C -0.07 -1.50 9.35 -39.64 -0.37 -1.87 16 14 C -0.17 -4.20 8.63 -39.28 -0.34 -4.54 16 15 C 0.12 2.98 5.57 -106.79 -0.59 2.38 16 16 C -0.44 -10.57 9.03 -37.87 -0.34 -10.91 16 17 H 0.09 1.96 7.91 -52.49 -0.42 1.54 16 18 C 0.07 1.65 5.13 -17.32 -0.09 1.56 16 19 N -0.77 -18.16 10.97 55.55 0.61 -17.56 16 20 Si 0.91 16.87 29.60 -169.99 -5.03 11.84 16 21 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 22 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 23 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 24 C -0.23 -5.26 9.73 -39.28 -0.38 -5.64 16 25 C -0.05 -1.15 9.35 -39.64 -0.37 -1.52 16 26 C -0.16 -2.60 9.36 -39.60 -0.37 -2.97 16 27 C -0.07 -1.01 9.35 -39.51 -0.37 -1.38 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 32 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.14 1.48 6.06 -52.49 -0.32 1.16 16 34 H 0.13 1.56 7.52 -52.49 -0.39 1.17 16 35 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 36 H 0.12 1.95 6.16 -52.49 -0.32 1.63 16 37 H 0.09 1.84 6.16 -52.48 -0.32 1.52 16 38 H 0.12 2.92 6.18 -52.49 -0.32 2.60 16 39 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 40 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 41 H 0.09 1.72 6.16 -52.49 -0.32 1.40 16 42 H 0.12 1.85 6.16 -52.49 -0.32 1.53 16 43 H 0.12 1.39 6.15 -52.49 -0.32 1.06 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -26.77 367.05 -10.44 -37.21 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.16 Total: 8.87 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: -5.67 Total: -32.90 kcal Atomic # 7 Polarization: -18.16 SS G_CDS: 0.61 Total: -17.56 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.73 Total: -13.00 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.77 -10.44 -37.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245127695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.369 kcal (2) G-P(sol) polarization free energy of solvation -26.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds