Wall clock time and date at job start Tue Mar 31 2020 12:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47003 * 2 1 4 4 C 1.34928 * 116.99649 * 180.02562 * 3 2 1 5 5 O 1.21637 * 119.99949 * 0.02562 * 4 3 2 6 6 C 1.46172 * 119.99872 * 180.02562 * 4 3 2 7 7 C 1.35109 * 119.99707 * 180.02562 * 6 4 3 8 8 C 1.46940 * 119.99747 * 179.97438 * 7 6 4 9 9 C 1.40088 * 120.02589 * 179.97438 * 8 7 6 10 10 C 1.36508 * 119.97003 * 180.02562 * 9 8 7 11 11 C 1.39861 * 120.02798 * 0.26328 * 10 9 8 12 12 C 1.47762 * 119.97156 * 179.74302 * 11 10 9 13 13 C 1.40055 * 119.89263 * 359.71934 * 12 11 10 14 14 C 1.36187 * 120.11713 * 179.75757 * 13 12 11 15 15 C 1.40987 * 119.88280 * 0.52096 * 14 13 12 16 16 C 1.40935 * 120.11036 * 179.71506 * 15 14 13 17 17 H 1.07994 * 119.99989 * 155.02486 * 16 15 14 18 18 C 1.40095 * 119.99532 * 335.02271 * 16 15 14 19 19 N 1.30735 * 120.00437 * 342.15272 * 18 16 15 20 20 Si 1.86807 * 119.99518 * 162.15062 * 18 16 15 21 21 H 1.48495 * 109.47187 * 94.65745 * 20 18 16 22 22 H 1.48497 * 109.46865 * 214.65411 * 20 18 16 23 23 H 1.48497 * 109.47009 * 334.65488 * 20 18 16 24 24 C 1.40985 * 119.78092 * 359.73187 * 15 14 13 25 25 C 1.36189 * 119.88355 * 0.02562 * 24 15 14 26 26 C 1.39857 * 120.05713 * 359.47994 * 11 10 9 27 27 C 1.36512 * 120.02614 * 0.51741 * 26 11 10 28 28 H 1.09005 * 109.46903 * 299.99898 * 1 2 3 29 29 H 1.09000 * 109.46837 * 59.99709 * 1 2 3 30 30 H 1.09000 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46903 * 240.00102 * 2 1 3 32 32 H 1.09000 * 109.46837 * 120.00291 * 2 1 3 33 33 H 1.08002 * 119.99899 * 359.97438 * 6 4 3 34 34 H 1.08001 * 120.00270 * 359.97438 * 7 6 4 35 35 H 1.08005 * 120.01929 * 0.04463 * 9 8 7 36 36 H 1.07998 * 119.98916 * 179.97438 * 10 9 8 37 37 H 1.08006 * 119.94161 * 0.02562 * 13 12 11 38 38 H 1.08000 * 120.05890 * 180.25162 * 14 13 12 39 39 H 0.97004 * 120.00295 * 180.02562 * 19 18 16 40 40 H 1.08001 * 120.05615 * 180.02562 * 24 15 14 41 41 H 1.07999 * 119.94044 * 179.97438 * 25 24 15 42 42 H 1.07999 * 119.99024 * 180.23643 * 26 11 10 43 43 H 1.07999 * 120.01518 * 179.72133 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3440 1.5240 -0.0005 5 8 4.0849 0.5593 -0.0015 6 6 3.9027 2.8747 0.0000 7 6 5.2422 3.0516 -0.0011 8 6 5.8038 4.4095 -0.0011 9 6 7.1926 4.5936 -0.0017 10 6 7.7131 5.8555 -0.0012 11 6 6.8607 6.9643 0.0055 12 6 7.4255 8.3297 0.0117 13 6 8.8143 8.5105 0.0170 14 6 9.3398 9.7669 0.0178 15 6 8.4832 10.8866 0.0244 16 6 9.0219 12.1889 0.0314 17 1 8.4447 13.0141 -0.3586 18 6 10.3062 12.4129 0.5443 19 7 10.8650 11.5213 1.3201 20 14 11.2203 13.9856 0.1194 21 1 10.9956 14.9927 1.1873 22 1 12.6730 13.6988 0.0073 23 1 10.7191 14.5154 -1.1741 24 6 7.0858 10.6993 0.0245 25 6 6.5702 9.4388 0.0187 26 6 5.4740 6.7818 0.0006 27 6 4.9510 5.5209 0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2448 3.7312 0.0004 34 1 5.9000 2.1951 -0.0019 35 1 7.8511 3.7376 -0.0028 36 1 8.7837 5.9978 -0.0012 37 1 9.4697 7.6520 0.0160 38 1 10.4109 9.9052 0.0177 39 1 11.7541 11.6765 1.6756 40 1 6.4255 11.5539 0.0292 41 1 5.5000 9.2942 0.0192 42 1 4.8168 7.6388 0.0019 43 1 3.8802 5.3802 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245127695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:49 Heat of formation + Delta-G solvation = -50.676100 kcal Electronic energy + Delta-G solvation = -24068.860124 eV Core-core repulsion = 20428.877129 eV Total energy + Delta-G solvation = -3639.982995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50693 -40.54670 -39.10484 -37.88785 -36.03589 -34.93315 -32.77791 -32.37337 -32.20759 -31.13499 -29.98554 -27.36598 -25.53846 -24.23859 -23.91174 -22.92522 -22.06895 -21.70699 -20.38371 -19.36923 -19.02487 -17.87880 -17.63208 -17.48925 -16.99098 -16.43857 -15.95492 -15.70644 -15.10175 -15.01689 -14.86088 -14.66599 -14.49832 -14.29833 -14.15459 -13.73784 -13.73403 -13.53773 -13.31589 -13.03321 -12.95917 -12.81842 -12.69263 -12.47409 -12.42321 -12.04811 -11.92016 -11.63572 -11.54757 -11.51192 -11.42743 -11.13685 -10.99236 -9.92563 -9.80895 -9.50545 -8.80203 -8.56631 -6.34719 -0.67360 0.48535 0.63108 1.16218 1.21302 1.38055 1.50999 1.56818 1.76186 2.02407 2.16393 2.64417 3.12208 3.66543 3.76301 3.80739 4.00916 4.01255 4.09644 4.13262 4.14353 4.26339 4.35795 4.36795 4.48417 4.56570 4.58260 4.79499 4.92952 4.93676 5.00142 5.07122 5.07881 5.15191 5.17776 5.25729 5.30918 5.35123 5.44005 5.52804 5.62414 5.69433 5.72311 5.93033 6.04640 6.15771 6.26014 6.28179 6.60420 6.72947 6.82056 6.95640 8.19994 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.045132 B = 0.001747 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.248679 B =16026.861581 C =16551.933730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.354 6.354 4 C 0.500 3.500 5 O -0.550 6.550 6 C -0.223 4.223 7 C 0.027 3.973 8 C -0.131 4.131 9 C -0.072 4.072 10 C -0.161 4.161 11 C 0.018 3.982 12 C -0.211 4.211 13 C -0.080 4.080 14 C -0.196 4.196 15 C 0.087 3.913 16 C -0.482 4.482 17 H 0.083 0.917 18 C 0.035 3.965 19 N -0.809 5.809 20 Si 0.984 3.016 21 H -0.261 1.261 22 H -0.265 1.265 23 H -0.257 1.257 24 C -0.247 4.247 25 C -0.063 4.063 26 C -0.156 4.156 27 C -0.074 4.074 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.293 0.707 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.133 0.867 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.684 -15.307 -1.922 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.270 6.270 4 C 0.349 3.651 5 O -0.443 6.443 6 C -0.241 4.241 7 C 0.008 3.992 8 C -0.132 4.132 9 C -0.090 4.090 10 C -0.179 4.179 11 C 0.018 3.982 12 C -0.213 4.213 13 C -0.098 4.098 14 C -0.215 4.215 15 C 0.085 3.915 16 C -0.510 4.510 17 H 0.101 0.899 18 C -0.182 4.182 19 N -0.433 5.433 20 Si 0.804 3.196 21 H -0.185 1.185 22 H -0.189 1.189 23 H -0.180 1.180 24 C -0.266 4.266 25 C -0.081 4.081 26 C -0.174 4.174 27 C -0.092 4.092 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.176 0.824 34 H 0.154 0.846 35 H 0.164 0.836 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.104 0.896 40 H 0.121 0.879 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.308 -15.659 -1.766 19.995 hybrid contribution 0.842 0.678 0.059 1.083 sum -11.466 -14.980 -1.707 18.942 Atomic orbital electron populations 1.21830 0.90330 1.04382 1.03733 1.22907 0.97216 0.79873 1.02331 1.86203 1.23559 1.33380 1.83906 1.21554 0.80635 0.90860 0.72002 1.90849 1.60901 1.44108 1.48455 1.22173 0.96154 0.93487 1.12308 1.22425 0.94768 0.95603 0.86360 1.18923 0.93528 0.92298 1.08404 1.21214 0.94414 0.97238 0.96106 1.21047 1.00138 0.92249 1.04419 1.19272 0.93807 0.92167 0.92915 1.18458 0.92843 0.91821 1.18130 1.20809 0.94444 0.96397 0.98150 1.20961 0.99273 0.92289 1.09006 1.18124 0.92125 0.93999 0.87275 1.19989 1.00632 0.94831 1.35517 0.89907 1.26886 0.97583 1.02010 0.91714 1.69827 1.15740 1.36477 1.21299 0.85152 0.77528 0.76864 0.80021 1.18513 1.18896 1.18035 1.20906 0.94641 0.96634 1.14455 1.20764 0.98677 0.91923 0.96770 1.21074 0.94021 0.98209 1.04089 1.21303 1.00669 0.91138 0.96087 0.91271 0.91256 0.88226 0.91666 0.91690 0.82359 0.84568 0.83563 0.85809 0.87080 0.87956 0.89582 0.87883 0.85753 0.84974 0.83041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 71.98 0.74 -0.67 16 2 C 0.05 0.80 6.10 71.98 0.44 1.24 16 3 O -0.35 -7.29 10.12 -58.44 -0.59 -7.89 16 4 C 0.50 11.70 7.87 69.88 0.55 12.25 16 5 O -0.55 -15.67 16.01 19.39 0.31 -15.36 16 6 C -0.22 -4.48 9.53 23.61 0.23 -4.26 16 7 C 0.03 0.57 9.45 23.83 0.23 0.79 16 8 C -0.13 -3.17 5.87 -20.10 -0.12 -3.29 16 9 C -0.07 -1.84 9.73 22.31 0.22 -1.62 16 10 C -0.16 -5.01 9.36 22.26 0.21 -4.81 16 11 C 0.02 0.65 5.89 -19.97 -0.12 0.53 16 12 C -0.21 -8.94 5.90 -19.88 -0.12 -9.05 16 13 C -0.08 -3.62 9.35 22.23 0.21 -3.42 16 14 C -0.20 -10.04 8.63 22.47 0.19 -9.84 16 15 C 0.09 4.58 5.57 -21.27 -0.12 4.47 16 16 C -0.48 -24.89 9.03 23.38 0.21 -24.68 16 17 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 18 C 0.04 1.70 5.13 85.31 0.44 2.14 16 19 N -0.81 -40.48 10.97 21.85 0.24 -40.24 16 20 Si 0.98 36.01 29.60 68.60 2.03 38.04 16 21 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 22 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 23 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 24 C -0.25 -11.70 9.73 22.47 0.22 -11.48 16 25 C -0.06 -2.68 9.35 22.23 0.21 -2.48 16 26 C -0.16 -4.61 9.36 22.26 0.21 -4.40 16 27 C -0.07 -1.80 9.35 22.32 0.21 -1.59 16 28 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 1.04 8.13 -2.38 -0.02 1.02 16 32 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 33 H 0.16 2.54 6.06 -2.91 -0.02 2.53 16 34 H 0.14 2.78 7.52 -2.91 -0.02 2.76 16 35 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.12 3.79 6.16 -2.91 -0.02 3.77 16 37 H 0.11 4.47 6.16 -2.91 -0.02 4.46 16 38 H 0.10 5.45 6.18 -2.91 -0.02 5.43 16 39 H 0.29 13.12 8.29 -92.71 -0.77 12.35 16 40 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.12 4.37 6.16 -2.91 -0.02 4.35 16 42 H 0.13 3.59 6.16 -2.91 -0.02 3.57 16 43 H 0.15 2.69 6.15 -2.91 -0.02 2.67 16 Total: -1.00 -60.94 367.05 7.05 -53.88 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 1.04 Total: 31.70 kcal Atomic # 6 Polarization: -64.18 SS G_CDS: 4.03 Total: -60.15 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.24 Total: -40.24 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.28 Total: -23.24 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -60.94 7.05 -53.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245127695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.207 kcal (2) G-P(sol) polarization free energy of solvation -60.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds