Wall clock time and date at job start Tue Mar 31 2020 12:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42904 * 109.47397 * 2 1 4 4 C 1.34920 * 116.99967 * 180.02562 * 3 2 1 5 5 O 1.21629 * 120.00261 * 359.97438 * 4 3 2 6 6 C 1.46164 * 119.99785 * 180.02562 * 4 3 2 7 7 C 1.35030 * 119.99927 * 179.97438 * 6 4 3 8 8 C 1.47019 * 120.00253 * 179.97438 * 7 6 4 9 9 C 1.39988 * 120.05212 * 179.97438 * 8 7 6 10 10 C 1.37098 * 119.94591 * 179.97438 * 9 8 7 11 11 C 1.39566 * 120.05432 * 0.02562 * 10 9 8 12 12 C 1.48260 * 119.95055 * 180.02562 * 11 10 9 13 13 C 1.39803 * 120.00741 * 359.97438 * 12 11 10 14 14 C 1.38366 * 120.36927 * 179.72906 * 13 12 11 15 15 C 1.37735 * 120.39019 * 0.27460 * 14 13 12 16 16 C 1.40759 * 120.00729 * 0.02562 * 15 14 13 17 17 C 1.41430 * 120.18400 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99536 * 204.51793 * 17 16 15 19 19 C 1.39925 * 120.00078 * 24.51041 * 17 16 15 20 20 N 1.30837 * 119.99975 * 17.89995 * 19 17 16 21 21 Si 1.86796 * 120.00178 * 197.90868 * 19 17 16 22 22 H 1.48496 * 109.47513 * 94.69002 * 21 19 17 23 23 H 1.48501 * 109.47226 * 214.69099 * 21 19 17 24 24 H 1.48508 * 109.46817 * 334.68625 * 21 19 17 25 25 C 1.38824 * 120.00678 * 180.30067 * 12 11 10 26 26 C 1.39560 * 120.09803 * 0.26899 * 11 10 9 27 27 C 1.37097 * 120.05724 * 359.45375 * 26 11 10 28 28 H 1.08998 * 109.47634 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47029 * 300.00589 * 1 2 3 30 30 H 1.09009 * 109.46697 * 60.00018 * 1 2 3 31 31 H 1.08995 * 109.47256 * 239.99096 * 2 1 3 32 32 H 1.09004 * 109.46971 * 119.99301 * 2 1 3 33 33 H 1.08002 * 120.00301 * 359.97438 * 6 4 3 34 34 H 1.08002 * 120.00252 * 359.97438 * 7 6 4 35 35 H 1.07999 * 120.03181 * 359.95881 * 9 8 7 36 36 H 1.08005 * 119.97666 * 180.02562 * 10 9 8 37 37 H 1.08002 * 119.81527 * 0.02562 * 13 12 11 38 38 H 1.07999 * 119.80108 * 180.29623 * 14 13 12 39 39 H 1.07997 * 119.99615 * 180.02562 * 15 14 13 40 40 H 0.97000 * 119.99581 * 179.97438 * 20 19 17 41 41 H 1.07993 * 120.19663 * 359.97438 * 25 12 11 42 42 H 1.08003 * 119.96888 * 179.70513 * 26 11 10 43 43 H 1.07996 * 120.03106 * 180.29277 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3440 1.5240 -0.0005 5 8 4.0849 0.5594 -0.0005 6 6 3.9027 2.8746 0.0000 7 6 5.2413 3.0515 0.0000 8 6 5.8034 4.4100 -0.0001 9 6 7.1910 4.5946 0.0005 10 6 7.7128 5.8624 -0.0001 11 6 6.8617 6.9686 -0.0007 12 6 7.4284 8.3386 -0.0018 13 6 8.8144 8.5219 -0.0019 14 6 9.3513 9.7971 -0.0086 15 6 8.5268 10.9003 -0.0097 16 6 7.1290 10.7345 -0.0034 17 6 6.2788 11.8647 -0.0039 18 1 5.2758 11.7860 0.3886 19 6 6.7373 13.0848 -0.5129 20 7 7.7873 13.1152 -1.2928 21 14 5.8504 14.6704 -0.0785 22 1 6.5142 15.3053 1.0883 23 1 5.8959 15.5968 -1.2383 24 1 4.4360 14.3698 0.2596 25 6 6.5829 9.4396 0.0039 26 6 5.4780 6.7869 0.0050 27 6 4.9515 5.5211 -0.0001 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.2448 3.7312 0.0004 34 1 5.8992 2.1950 0.0000 35 1 7.8501 3.7391 0.0016 36 1 8.7833 6.0054 -0.0001 37 1 9.4696 7.6633 -0.0014 38 1 10.4233 9.9280 -0.0134 39 1 8.9527 11.8928 -0.0154 40 1 8.1049 13.9610 -1.6459 41 1 5.5118 9.3020 0.0088 42 1 4.8213 7.6444 0.0094 43 1 3.8807 5.3810 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245129075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:53 Heat of formation + Delta-G solvation = -39.692863 kcal Electronic energy + Delta-G solvation = -24173.551602 eV Core-core repulsion = 20534.044877 eV Total energy + Delta-G solvation = -3639.506726 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.60908 -39.35904 -37.47841 -36.94471 -34.53405 -33.51390 -32.03445 -31.23989 -30.72302 -29.86572 -27.96183 -25.46714 -24.98625 -23.29122 -22.69857 -21.92041 -20.52375 -20.21505 -19.40532 -18.17204 -17.50774 -16.81852 -16.59541 -16.12288 -15.33279 -15.18009 -14.71441 -14.58878 -14.34718 -13.79011 -13.59102 -13.42222 -13.18612 -13.04764 -13.01207 -12.85846 -12.44769 -12.29958 -12.18672 -11.83637 -11.75718 -11.41008 -11.32064 -11.07805 -11.00681 -10.74793 -10.71183 -10.65532 -10.42426 -10.25730 -9.82235 -9.47487 -9.26710 -8.83960 -8.52445 -7.61464 -7.04948 -6.84538 -4.46296 0.31895 1.65003 1.68483 2.55934 2.69280 2.75736 3.02607 3.06391 3.07642 3.19951 3.86839 4.13676 4.49744 4.59576 4.60886 4.69448 4.73706 4.93567 4.96298 5.06053 5.14550 5.33941 5.35515 5.43907 5.52781 5.59410 5.60174 5.63503 5.93239 6.00366 6.07574 6.13260 6.25421 6.27335 6.37006 6.58378 6.64713 6.70826 6.81253 6.91959 7.07759 7.19295 7.24091 7.44088 7.62715 7.71216 7.89847 7.92860 8.14023 8.50350 8.78033 8.82493 10.10216 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019430 B = 0.002012 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.690342 B =13913.952843 C =15258.644180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.351 6.351 4 C 0.501 3.499 5 O -0.521 6.521 6 C -0.226 4.226 7 C 0.024 3.976 8 C -0.121 4.121 9 C -0.082 4.082 10 C -0.132 4.132 11 C 0.019 3.981 12 C -0.053 4.053 13 C -0.216 4.216 14 C -0.109 4.109 15 C -0.150 4.150 16 C 0.104 3.896 17 C -0.463 4.463 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.909 3.091 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.197 4.197 26 C -0.129 4.129 27 C -0.085 4.085 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.142 0.858 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.281 0.719 41 H 0.099 0.901 42 H 0.132 0.868 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 -16.637 1.840 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.268 6.268 4 C 0.349 3.651 5 O -0.412 6.412 6 C -0.244 4.244 7 C 0.005 3.995 8 C -0.121 4.121 9 C -0.100 4.100 10 C -0.149 4.149 11 C 0.019 3.981 12 C -0.053 4.053 13 C -0.235 4.235 14 C -0.128 4.128 15 C -0.169 4.169 16 C 0.102 3.898 17 C -0.493 4.493 18 H 0.097 0.903 19 C -0.142 4.142 20 N -0.419 5.419 21 Si 0.733 3.267 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.185 1.185 25 C -0.216 4.216 26 C -0.146 4.146 27 C -0.103 4.103 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.150 0.850 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.340 -16.780 1.687 18.392 hybrid contribution -0.291 0.624 0.032 0.690 sum -7.630 -16.155 1.718 17.949 Atomic orbital electron populations 1.21813 0.92580 1.02919 1.03609 1.22624 0.95444 0.80924 1.02393 1.86201 1.24325 1.31957 1.84333 1.21305 0.80341 0.90727 0.72690 1.90860 1.60237 1.43149 1.46983 1.22051 0.96080 0.93582 1.12723 1.22492 0.94508 0.96190 0.86304 1.18799 0.93666 0.91735 1.07880 1.21102 0.93649 0.97343 0.97860 1.21126 1.00370 0.91566 1.01876 1.19432 0.92762 0.93581 0.92288 1.18353 0.93529 0.89959 1.03474 1.20469 0.93138 0.96007 1.13877 1.20650 0.97733 0.93052 1.01335 1.21482 0.93598 0.97740 1.04096 1.17563 0.92398 0.91624 0.88241 1.19574 1.00346 0.93351 1.36005 0.90292 1.25905 0.94725 1.01071 0.92505 1.69817 1.21562 1.28492 1.22029 0.86287 0.80746 0.80660 0.78986 1.19307 1.20266 1.18525 1.21133 0.97242 0.91981 1.11284 1.21189 0.95037 0.97138 1.01265 1.21193 0.99315 0.91956 0.97836 0.90327 0.91434 0.91424 0.91559 0.91565 0.84083 0.84879 0.85846 0.85291 0.88873 0.89009 0.86217 0.90777 0.88303 0.85016 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.52 6.10 37.16 0.23 0.75 16 3 O -0.35 -3.91 10.12 -41.10 -0.42 -4.32 16 4 C 0.50 6.21 7.87 33.91 0.27 6.48 16 5 O -0.52 -7.59 16.01 -19.36 -0.31 -7.90 16 6 C -0.23 -2.52 9.53 -37.54 -0.36 -2.88 16 7 C 0.02 0.27 9.45 -37.16 -0.35 -0.08 16 8 C -0.12 -1.56 5.87 -105.02 -0.62 -2.18 16 9 C -0.08 -1.07 9.76 -39.34 -0.38 -1.45 16 10 C -0.13 -2.02 9.38 -39.50 -0.37 -2.39 16 11 C 0.02 0.34 5.88 -104.79 -0.62 -0.27 16 12 C -0.05 -1.13 5.87 -104.97 -0.62 -1.74 16 13 C -0.22 -4.54 9.43 -38.95 -0.37 -4.91 16 14 C -0.11 -2.44 10.01 -39.72 -0.40 -2.83 16 15 C -0.15 -3.73 8.69 -38.81 -0.34 -4.06 16 16 C 0.10 2.65 5.57 -106.87 -0.60 2.06 16 17 C -0.46 -11.79 9.05 -37.74 -0.34 -12.13 16 18 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 19 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 20 N -0.79 -19.85 10.96 55.55 0.61 -19.24 16 21 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 C -0.20 -4.56 9.17 -38.50 -0.35 -4.91 16 26 C -0.13 -2.05 9.38 -39.50 -0.37 -2.42 16 27 C -0.09 -1.14 9.38 -39.34 -0.37 -1.51 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 32 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 33 H 0.14 1.37 6.06 -52.49 -0.32 1.05 16 34 H 0.13 1.44 7.52 -52.49 -0.39 1.04 16 35 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.13 1.84 6.17 -52.48 -0.32 1.52 16 37 H 0.09 1.70 6.16 -52.49 -0.32 1.38 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.12 3.07 6.15 -52.49 -0.32 2.75 16 40 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 41 H 0.10 2.12 6.17 -52.49 -0.32 1.79 16 42 H 0.13 2.06 6.17 -52.48 -0.32 1.73 16 43 H 0.13 1.35 6.15 -52.49 -0.32 1.03 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -28.11 367.37 -10.43 -38.54 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.16 Total: 7.60 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -5.66 Total: -33.24 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.61 Total: -19.24 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.73 Total: -12.23 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.11 -10.43 -38.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245129075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.153 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds