Wall clock time and date at job start Tue Mar 31 2020 12:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47220 * 2 1 4 4 C 1.34924 * 117.00170 * 180.02562 * 3 2 1 5 5 O 1.21642 * 119.99799 * 359.97438 * 4 3 2 6 6 C 1.46155 * 120.00091 * 180.02562 * 4 3 2 7 7 C 1.35121 * 119.99873 * 180.26888 * 6 4 3 8 8 C 1.46919 * 119.99957 * 179.72329 * 7 6 4 9 9 C 1.40101 * 120.02383 * 359.73235 * 8 7 6 10 10 C 1.36496 * 119.97865 * 179.75867 * 9 8 7 11 11 C 1.39908 * 120.01968 * 0.49078 * 10 9 8 12 12 C 1.47637 * 119.97847 * 179.73873 * 11 10 9 13 13 C 1.39299 * 120.35094 * 129.73991 * 12 11 10 14 14 C 1.38014 * 119.97719 * 179.74703 * 13 12 11 15 15 C 1.38979 * 120.68946 * 0.56525 * 14 13 12 16 16 C 1.36398 * 120.71375 * 359.69024 * 15 14 13 17 17 C 1.40780 * 119.99716 * 0.02757 * 16 15 14 18 18 C 1.40775 * 120.34472 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00244 * 153.93755 * 18 17 16 20 20 C 1.40158 * 119.99418 * 333.94736 * 18 17 16 21 21 N 1.30721 * 120.00317 * 344.26565 * 20 18 17 22 22 Si 1.86803 * 119.99848 * 164.27020 * 20 18 17 23 23 H 1.48507 * 109.47028 * 59.99976 * 22 20 18 24 24 H 1.48506 * 109.47304 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47452 * 299.99540 * 22 20 18 26 26 C 1.39920 * 120.04882 * 359.76082 * 11 10 9 27 27 C 1.36489 * 120.02262 * 0.02562 * 26 11 10 28 28 H 1.09003 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46792 * 299.99940 * 1 2 3 30 30 H 1.09003 * 109.47593 * 59.99809 * 1 2 3 31 31 H 1.09002 * 109.46792 * 240.00060 * 2 1 3 32 32 H 1.09001 * 109.47213 * 120.00559 * 2 1 3 33 33 H 1.07995 * 120.00039 * 359.97438 * 6 4 3 34 34 H 1.08005 * 120.00027 * 359.72654 * 7 6 4 35 35 H 1.08002 * 120.01351 * 359.97438 * 9 8 7 36 36 H 1.07992 * 119.99054 * 180.24514 * 10 9 8 37 37 H 1.08002 * 120.01239 * 0.02562 * 13 12 11 38 38 H 1.07999 * 119.65388 * 180.29839 * 14 13 12 39 39 H 1.08001 * 119.63988 * 179.71947 * 15 14 13 40 40 H 1.08006 * 119.99871 * 180.02562 * 16 15 14 41 41 H 0.97003 * 120.00217 * 180.02562 * 21 20 18 42 42 H 1.07993 * 119.98664 * 179.97438 * 26 11 10 43 43 H 1.07999 * 120.01270 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3439 1.5241 -0.0005 5 8 4.0849 0.5594 -0.0005 6 6 3.9026 2.8746 0.0000 7 6 5.2421 3.0517 -0.0060 8 6 5.8037 4.4093 -0.0116 9 6 4.9507 5.5207 -0.0164 10 6 5.4734 6.7816 -0.0166 11 6 6.8605 6.9643 -0.0225 12 6 7.4248 8.3286 -0.0286 13 6 8.4076 8.6878 0.8910 14 6 8.9335 9.9637 0.8750 15 6 8.4849 10.9045 -0.0444 16 6 7.5201 10.5846 -0.9540 17 6 6.9673 9.2899 -0.9678 18 6 5.9709 8.9521 -1.9030 19 1 5.8443 7.9244 -2.2097 20 6 5.1432 9.9496 -2.4362 21 7 5.0764 11.1209 -1.8596 22 14 4.1354 9.6054 -3.9710 23 1 3.2108 8.4724 -3.7122 24 1 3.3493 10.8135 -4.3283 25 1 5.0444 9.2564 -5.0921 26 6 7.7133 5.8551 -0.0231 27 6 7.1926 4.5934 -0.0184 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.2447 3.7311 0.0004 34 1 5.9001 2.1951 -0.0068 35 1 3.8799 5.3799 -0.0164 36 1 4.8161 7.6384 -0.0163 37 1 8.7611 7.9669 1.6133 38 1 9.6987 10.2352 1.5872 39 1 8.9051 11.8994 -0.0388 40 1 7.1803 11.3246 -1.6635 41 1 4.5033 11.8111 -2.2284 42 1 8.7838 5.9973 -0.0280 43 1 7.8510 3.7373 -0.0193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245129506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:56 Heat of formation + Delta-G solvation = -40.746532 kcal Electronic energy + Delta-G solvation = -24956.407637 eV Core-core repulsion = 21316.855220 eV Total energy + Delta-G solvation = -3639.552416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45710 -39.10061 -37.43364 -36.79962 -34.03358 -33.85416 -31.94470 -31.05833 -30.54429 -29.64817 -28.01974 -25.62848 -24.68040 -23.12067 -22.25952 -21.60415 -20.86385 -20.03497 -19.17268 -17.97141 -17.45235 -16.69181 -16.47960 -16.09037 -15.37749 -14.89650 -14.57073 -14.31519 -14.22571 -13.68965 -13.60269 -13.40281 -13.07747 -12.98916 -12.75147 -12.52701 -12.39729 -12.16179 -12.04447 -11.75572 -11.69150 -11.39188 -11.21728 -11.12060 -10.77273 -10.63425 -10.58898 -10.54315 -10.40098 -10.15844 -9.67008 -9.54346 -9.34455 -8.53030 -8.09017 -7.55092 -7.23792 -6.90724 -4.50971 0.57963 1.98601 2.04059 2.68233 2.70739 2.86586 2.97920 3.01125 3.14167 3.19021 3.80033 4.39503 4.49360 4.66520 4.70008 4.82075 4.97757 5.03764 5.19742 5.32023 5.39916 5.48294 5.52683 5.54257 5.72045 5.74142 5.85267 5.96799 6.10516 6.17781 6.27522 6.36544 6.39786 6.44288 6.56220 6.62422 6.86910 6.91822 7.01117 7.07108 7.15503 7.32249 7.43129 7.48319 7.77112 7.78271 7.89267 7.96759 8.10356 8.44850 8.68379 8.78723 9.97874 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.002915 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.425159 B = 9603.243820 C =11292.134895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.352 6.352 4 C 0.502 3.498 5 O -0.525 6.525 6 C -0.236 4.236 7 C 0.031 3.969 8 C -0.133 4.133 9 C -0.090 4.090 10 C -0.110 4.110 11 C 0.056 3.944 12 C -0.203 4.203 13 C -0.066 4.066 14 C -0.244 4.244 15 C -0.099 4.099 16 C -0.158 4.158 17 C 0.132 3.868 18 C -0.447 4.447 19 H 0.084 0.916 20 C 0.077 3.923 21 N -0.784 5.784 22 Si 0.906 3.094 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.143 4.143 27 C -0.082 4.082 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.284 0.716 42 H 0.120 0.880 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 -12.193 1.921 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.269 6.269 4 C 0.351 3.649 5 O -0.416 6.416 6 C -0.255 4.255 7 C 0.013 3.987 8 C -0.133 4.133 9 C -0.107 4.107 10 C -0.127 4.127 11 C 0.056 3.944 12 C -0.204 4.204 13 C -0.084 4.084 14 C -0.263 4.263 15 C -0.117 4.117 16 C -0.177 4.177 17 C 0.130 3.870 18 C -0.476 4.476 19 H 0.102 0.898 20 C -0.143 4.143 21 N -0.408 5.408 22 Si 0.730 3.270 23 H -0.186 1.186 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.162 4.162 27 C -0.100 4.100 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.152 0.848 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.096 0.904 42 H 0.138 0.862 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.003 -12.258 1.901 13.375 hybrid contribution -0.488 -0.140 -0.670 0.841 sum -5.491 -12.398 1.231 13.616 Atomic orbital electron populations 1.21809 0.92684 1.02821 1.03590 1.22599 0.95368 0.81103 1.02307 1.86207 1.24484 1.31764 1.84424 1.21346 0.80213 0.90792 0.72572 1.90849 1.60224 1.43197 1.47350 1.22024 0.96129 0.93377 1.13958 1.22494 0.94354 0.96285 0.85610 1.18748 0.93622 0.91558 1.09414 1.21066 0.99045 0.92199 0.98434 1.21189 0.95372 0.96848 0.99338 1.19127 0.92443 0.92863 0.90013 1.18605 1.05825 0.93510 1.02507 1.20579 0.95374 0.95472 0.97003 1.20292 1.06361 0.94981 1.04697 1.20510 0.97598 0.97210 0.96416 1.21088 0.97668 0.98104 1.00850 1.17527 0.89773 0.90391 0.89339 1.19601 1.12769 0.95398 1.19807 0.89784 1.25984 0.96729 0.94257 0.97327 1.69752 1.31086 1.04260 1.35654 0.86378 0.79861 0.79052 0.81730 1.18613 1.20177 1.18634 1.21017 0.99775 0.91820 1.03551 1.20886 0.93550 0.97213 0.98371 0.90410 0.91459 0.91450 0.91638 0.91644 0.84160 0.85198 0.86185 0.84784 0.89103 0.89320 0.89386 0.86243 0.90438 0.86214 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.60 6.10 37.16 0.23 0.83 16 3 O -0.35 -4.46 10.12 -41.11 -0.42 -4.88 16 4 C 0.50 7.08 7.87 33.91 0.27 7.35 16 5 O -0.52 -8.45 16.01 -19.37 -0.31 -8.76 16 6 C -0.24 -3.13 9.53 -37.51 -0.36 -3.49 16 7 C 0.03 0.42 9.45 -37.18 -0.35 0.07 16 8 C -0.13 -2.03 5.87 -104.98 -0.62 -2.65 16 9 C -0.09 -1.46 9.35 -39.51 -0.37 -1.83 16 10 C -0.11 -2.09 7.92 -39.59 -0.31 -2.40 16 11 C 0.06 1.11 4.94 -104.81 -0.52 0.60 16 12 C -0.20 -4.57 5.52 -104.24 -0.57 -5.15 16 13 C -0.07 -1.41 9.51 -39.27 -0.37 -1.78 16 14 C -0.24 -5.19 10.03 -39.39 -0.40 -5.58 16 15 C -0.10 -2.20 9.96 -39.97 -0.40 -2.59 16 16 C -0.16 -3.85 8.62 -39.28 -0.34 -4.18 16 17 C 0.13 3.25 5.56 -106.55 -0.59 2.66 16 18 C -0.45 -10.79 7.13 -37.90 -0.27 -11.06 16 19 H 0.08 2.00 6.60 -52.49 -0.35 1.65 16 20 C 0.08 1.77 5.17 -17.30 -0.09 1.68 16 21 N -0.78 -18.70 10.93 55.56 0.61 -18.09 16 22 Si 0.91 17.59 29.59 -169.99 -5.03 12.56 16 23 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 24 H -0.28 -5.25 7.11 56.52 0.40 -4.84 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 26 C -0.14 -2.49 9.46 -39.58 -0.37 -2.86 16 27 C -0.08 -1.25 9.73 -39.51 -0.38 -1.63 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 33 H 0.14 1.70 6.06 -52.49 -0.32 1.39 16 34 H 0.13 1.66 7.52 -52.48 -0.39 1.26 16 35 H 0.12 1.68 6.15 -52.49 -0.32 1.35 16 36 H 0.13 2.73 7.29 -52.49 -0.38 2.35 16 37 H 0.09 1.72 8.04 -52.49 -0.42 1.29 16 38 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.12 2.99 6.19 -52.48 -0.33 2.66 16 41 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 42 H 0.12 1.94 8.04 -52.49 -0.42 1.52 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -26.62 369.02 -10.48 -37.10 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.45 Total: 9.24 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: -5.44 Total: -32.73 kcal Atomic # 7 Polarization: -18.70 SS G_CDS: 0.61 Total: -18.09 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.73 Total: -13.63 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -26.62 -10.48 -37.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245129506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.646 kcal (2) G-P(sol) polarization free energy of solvation -26.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds