Wall clock time and date at job start Tue Mar 31 2020 12:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47220 * 2 1 4 4 C 1.34924 * 117.00170 * 180.02562 * 3 2 1 5 5 O 1.21642 * 119.99799 * 359.97438 * 4 3 2 6 6 C 1.46155 * 120.00091 * 180.02562 * 4 3 2 7 7 C 1.35121 * 119.99873 * 180.26888 * 6 4 3 8 8 C 1.46919 * 119.99957 * 179.72329 * 7 6 4 9 9 C 1.40101 * 120.02383 * 359.73235 * 8 7 6 10 10 C 1.36496 * 119.97865 * 179.75867 * 9 8 7 11 11 C 1.39908 * 120.01968 * 0.49078 * 10 9 8 12 12 C 1.47637 * 119.97847 * 179.73873 * 11 10 9 13 13 C 1.39299 * 120.35094 * 129.73991 * 12 11 10 14 14 C 1.38014 * 119.97719 * 179.74703 * 13 12 11 15 15 C 1.38979 * 120.68946 * 0.56525 * 14 13 12 16 16 C 1.36398 * 120.71375 * 359.69024 * 15 14 13 17 17 C 1.40780 * 119.99716 * 0.02757 * 16 15 14 18 18 C 1.40775 * 120.34472 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00244 * 153.93755 * 18 17 16 20 20 C 1.40158 * 119.99418 * 333.94736 * 18 17 16 21 21 N 1.30721 * 120.00317 * 344.26565 * 20 18 17 22 22 Si 1.86803 * 119.99848 * 164.27020 * 20 18 17 23 23 H 1.48507 * 109.47028 * 59.99976 * 22 20 18 24 24 H 1.48506 * 109.47304 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47452 * 299.99540 * 22 20 18 26 26 C 1.39920 * 120.04882 * 359.76082 * 11 10 9 27 27 C 1.36489 * 120.02262 * 0.02562 * 26 11 10 28 28 H 1.09003 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46792 * 299.99940 * 1 2 3 30 30 H 1.09003 * 109.47593 * 59.99809 * 1 2 3 31 31 H 1.09002 * 109.46792 * 240.00060 * 2 1 3 32 32 H 1.09001 * 109.47213 * 120.00559 * 2 1 3 33 33 H 1.07995 * 120.00039 * 359.97438 * 6 4 3 34 34 H 1.08005 * 120.00027 * 359.72654 * 7 6 4 35 35 H 1.08002 * 120.01351 * 359.97438 * 9 8 7 36 36 H 1.07992 * 119.99054 * 180.24514 * 10 9 8 37 37 H 1.08002 * 120.01239 * 0.02562 * 13 12 11 38 38 H 1.07999 * 119.65388 * 180.29839 * 14 13 12 39 39 H 1.08001 * 119.63988 * 179.71947 * 15 14 13 40 40 H 1.08006 * 119.99871 * 180.02562 * 16 15 14 41 41 H 0.97003 * 120.00217 * 180.02562 * 21 20 18 42 42 H 1.07993 * 119.98664 * 179.97438 * 26 11 10 43 43 H 1.07999 * 120.01270 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3439 1.5241 -0.0005 5 8 4.0849 0.5594 -0.0005 6 6 3.9026 2.8746 0.0000 7 6 5.2421 3.0517 -0.0060 8 6 5.8037 4.4093 -0.0116 9 6 4.9507 5.5207 -0.0164 10 6 5.4734 6.7816 -0.0166 11 6 6.8605 6.9643 -0.0225 12 6 7.4248 8.3286 -0.0286 13 6 8.4076 8.6878 0.8910 14 6 8.9335 9.9637 0.8750 15 6 8.4849 10.9045 -0.0444 16 6 7.5201 10.5846 -0.9540 17 6 6.9673 9.2899 -0.9678 18 6 5.9709 8.9521 -1.9030 19 1 5.8443 7.9244 -2.2097 20 6 5.1432 9.9496 -2.4362 21 7 5.0764 11.1209 -1.8596 22 14 4.1354 9.6054 -3.9710 23 1 3.2108 8.4724 -3.7122 24 1 3.3493 10.8135 -4.3283 25 1 5.0444 9.2564 -5.0921 26 6 7.7133 5.8551 -0.0231 27 6 7.1926 4.5934 -0.0184 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.2447 3.7311 0.0004 34 1 5.9001 2.1951 -0.0068 35 1 3.8799 5.3799 -0.0164 36 1 4.8161 7.6384 -0.0163 37 1 8.7611 7.9669 1.6133 38 1 9.6987 10.2352 1.5872 39 1 8.9051 11.8994 -0.0388 40 1 7.1803 11.3246 -1.6635 41 1 4.5033 11.8111 -2.2284 42 1 8.7838 5.9973 -0.0280 43 1 7.8510 3.7373 -0.0193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245129506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:55 Heat of formation + Delta-G solvation = -49.454250 kcal Electronic energy + Delta-G solvation = -24956.785232 eV Core-core repulsion = 21316.855220 eV Total energy + Delta-G solvation = -3639.930011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51259 -40.51030 -38.99179 -37.87722 -35.60378 -35.26846 -32.83924 -32.35065 -31.91756 -31.33368 -29.44617 -27.27039 -25.89642 -24.16369 -23.54704 -22.83009 -22.51723 -21.50750 -20.36841 -19.22634 -19.01389 -17.68782 -17.63594 -17.46580 -16.93650 -16.28384 -15.97299 -15.77110 -15.19265 -15.10042 -15.05203 -14.58250 -14.41373 -14.29564 -14.07378 -13.72949 -13.58121 -13.43731 -13.14709 -13.02237 -12.96588 -12.81107 -12.65023 -12.48089 -12.38469 -12.13861 -11.78245 -11.63557 -11.58655 -11.48942 -11.23346 -11.11926 -11.06595 -9.85532 -9.58477 -9.31000 -8.81867 -8.57268 -6.29949 -0.60753 0.64777 0.68916 1.03492 1.27170 1.38122 1.47360 1.54109 1.75529 2.00706 2.18519 2.74440 3.05781 3.66480 3.73383 3.88743 4.00393 4.04954 4.09696 4.17900 4.20402 4.32764 4.35383 4.47253 4.58726 4.62994 4.65216 4.78726 4.86634 4.91836 5.05044 5.10582 5.12528 5.15084 5.25160 5.28386 5.31766 5.43271 5.45306 5.56203 5.70282 5.73079 5.84563 6.00688 6.13815 6.16902 6.24067 6.37348 6.68762 6.72213 6.92296 7.03380 8.29369 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013158 B = 0.002915 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.425159 B = 9603.243820 C =11292.134895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.502 3.498 5 O -0.546 6.546 6 C -0.225 4.225 7 C 0.030 3.970 8 C -0.119 4.119 9 C -0.092 4.092 10 C -0.122 4.122 11 C 0.021 3.979 12 C -0.205 4.205 13 C -0.075 4.075 14 C -0.245 4.245 15 C -0.106 4.106 16 C -0.187 4.187 17 C 0.100 3.900 18 C -0.470 4.470 19 H 0.078 0.922 20 C 0.041 3.959 21 N -0.817 5.817 22 Si 0.968 3.032 23 H -0.258 1.258 24 H -0.268 1.268 25 H -0.263 1.263 26 C -0.142 4.142 27 C -0.078 4.078 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.289 0.711 42 H 0.130 0.870 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.486 -14.846 2.263 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.352 3.648 5 O -0.440 6.440 6 C -0.243 4.243 7 C 0.011 3.989 8 C -0.119 4.119 9 C -0.109 4.109 10 C -0.140 4.140 11 C 0.021 3.979 12 C -0.207 4.207 13 C -0.093 4.093 14 C -0.264 4.264 15 C -0.125 4.125 16 C -0.206 4.206 17 C 0.098 3.902 18 C -0.498 4.498 19 H 0.096 0.904 20 C -0.176 4.176 21 N -0.442 5.442 22 Si 0.789 3.211 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.188 1.188 26 C -0.160 4.160 27 C -0.095 4.095 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.148 0.852 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.456 -14.910 2.256 16.037 hybrid contribution -0.374 0.466 -0.654 0.886 sum -5.830 -14.444 1.602 15.658 Atomic orbital electron populations 1.21834 0.90424 1.04407 1.03655 1.22916 0.97164 0.79812 1.02430 1.86210 1.23596 1.33496 1.83900 1.21454 0.80638 0.90704 0.72029 1.90841 1.60817 1.43921 1.48391 1.22188 0.96345 0.93539 1.12271 1.22456 0.94679 0.95566 0.86172 1.18944 0.93737 0.91985 1.07234 1.21254 1.00438 0.91382 0.97845 1.21017 0.94918 0.97278 1.00802 1.19143 0.93201 0.92517 0.93089 1.18994 1.05421 0.94579 1.01665 1.20924 0.95127 0.96151 0.97140 1.20662 1.06493 0.94695 1.04508 1.20774 0.97077 0.98522 0.96110 1.21075 0.99353 0.98225 1.01991 1.17890 0.90660 0.91203 0.90449 1.19642 1.13748 0.95400 1.21050 0.90430 1.26677 0.97446 0.93889 0.99558 1.69809 1.32274 1.05135 1.37025 0.85443 0.78399 0.79133 0.78086 1.18162 1.19235 1.18787 1.21127 0.99994 0.91859 1.03019 1.21235 0.94043 0.97439 0.96801 0.88079 0.91313 0.91431 0.91610 0.91482 0.83041 0.83872 0.84075 0.87389 0.86573 0.86442 0.87439 0.87995 0.90013 0.85234 0.82840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.05 0.90 6.10 71.98 0.44 1.34 16 3 O -0.36 -8.26 10.12 -58.39 -0.59 -8.85 16 4 C 0.50 13.01 7.87 69.88 0.55 13.56 16 5 O -0.55 -16.43 16.01 19.37 0.31 -16.12 16 6 C -0.22 -5.33 9.53 23.61 0.23 -5.11 16 7 C 0.03 0.71 9.45 23.83 0.23 0.94 16 8 C -0.12 -3.32 5.87 -20.10 -0.12 -3.43 16 9 C -0.09 -2.86 9.35 22.32 0.21 -2.65 16 10 C -0.12 -4.73 7.92 22.27 0.18 -4.55 16 11 C 0.02 0.83 4.94 -19.98 -0.10 0.73 16 12 C -0.21 -9.46 5.52 -19.61 -0.11 -9.57 16 13 C -0.08 -3.18 9.51 22.47 0.21 -2.97 16 14 C -0.24 -10.23 10.03 22.39 0.22 -10.01 16 15 C -0.11 -4.81 9.96 22.02 0.22 -4.60 16 16 C -0.19 -9.55 8.62 22.46 0.19 -9.36 16 17 C 0.10 5.17 5.56 -21.11 -0.12 5.05 16 18 C -0.47 -23.79 7.13 23.36 0.17 -23.63 16 19 H 0.08 3.88 6.60 -2.91 -0.02 3.86 16 20 C 0.04 1.95 5.17 85.32 0.44 2.39 16 21 N -0.82 -40.94 10.93 21.86 0.24 -40.70 16 22 Si 0.97 36.99 29.59 68.60 2.03 39.02 16 23 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 24 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 25 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 26 C -0.14 -4.71 9.46 22.27 0.21 -4.50 16 27 C -0.08 -2.13 9.73 22.32 0.22 -1.91 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 32 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 33 H 0.15 3.23 6.06 -2.91 -0.02 3.22 16 34 H 0.14 3.13 7.52 -2.91 -0.02 3.11 16 35 H 0.14 3.69 6.15 -2.91 -0.02 3.67 16 36 H 0.11 4.67 7.29 -2.91 -0.02 4.65 16 37 H 0.12 4.21 8.04 -2.91 -0.02 4.19 16 38 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.10 5.44 6.19 -2.91 -0.02 5.42 16 41 H 0.29 13.18 8.29 -92.71 -0.77 12.42 16 42 H 0.13 3.97 8.04 -2.91 -0.02 3.94 16 43 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -59.56 369.02 7.02 -52.54 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 1.02 Total: 33.36 kcal Atomic # 6 Polarization: -63.26 SS G_CDS: 4.01 Total: -59.25 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.24 Total: -40.70 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.28 Total: -24.98 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Total: -59.56 7.02 -52.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245129506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.087 kcal (2) G-P(sol) polarization free energy of solvation -59.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds