Wall clock time and date at job start Tue Mar 31 2020 13:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99700 * 2 1 4 4 C 1.53006 * 109.47019 * 180.02562 * 3 2 1 5 5 N 1.46499 * 112.84601 * 304.06009 * 4 3 2 6 6 C 1.34770 * 120.00200 * 293.96117 * 5 4 3 7 7 O 1.21366 * 119.99963 * 354.97692 * 6 5 4 8 8 C 1.49304 * 120.00336 * 174.97588 * 6 5 4 9 9 O 1.21411 * 119.99770 * 0.02562 * 8 6 5 10 10 N 1.34779 * 120.00328 * 180.02562 * 8 6 5 11 11 C 1.40295 * 120.00119 * 179.97438 * 10 8 6 12 12 C 1.40726 * 126.09834 * 359.97433 * 11 10 8 13 13 N 1.30879 * 108.37497 * 180.02562 * 12 11 10 14 14 N 1.40066 * 108.43289 * 359.97438 * 13 12 11 15 15 C 1.37299 * 126.05208 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99866 * 180.02562 * 15 14 13 17 17 C 1.39005 * 119.99904 * 0.02562 * 15 14 13 18 18 N 1.31282 * 120.00040 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99849 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46974 * 60.00780 * 19 17 15 21 21 H 1.48502 * 109.47113 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47417 * 300.00608 * 19 17 15 23 23 C 1.35785 * 126.10032 * 179.97438 * 11 10 8 24 24 C 1.53784 * 113.68942 * 75.32553 * 4 3 2 25 25 C 1.53779 * 87.07872 * 139.99431 * 24 4 3 26 26 C 1.53774 * 113.61592 * 172.86054 * 4 3 2 27 27 H 1.09004 * 109.46575 * 299.99934 * 1 2 3 28 28 H 1.08991 * 109.46977 * 59.99927 * 1 2 3 29 29 H 1.08997 * 109.46661 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47223 * 60.00276 * 3 2 1 31 31 H 1.09004 * 109.47104 * 299.99906 * 3 2 1 32 32 H 0.97001 * 119.99532 * 113.97202 * 5 4 3 33 33 H 0.96998 * 120.00021 * 359.97438 * 10 8 6 34 34 H 1.08003 * 125.81325 * 0.03755 * 12 11 10 35 35 H 0.97007 * 120.00022 * 179.97438 * 18 17 15 36 36 H 1.08000 * 126.24984 * 0.24594 * 23 11 10 37 37 H 1.08994 * 113.61298 * 254.54246 * 24 4 3 38 38 H 1.08997 * 113.61230 * 25.44852 * 24 4 3 39 39 H 1.09000 * 113.61451 * 220.02342 * 25 24 4 40 40 H 1.08994 * 113.61662 * 89.11745 * 25 24 4 41 41 H 1.09001 * 113.61772 * 334.48500 * 26 4 3 42 42 H 1.09001 * 113.61579 * 105.38492 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.0433 0.3859 1.1175 6 6 3.9034 0.8308 2.3819 7 8 3.4396 1.9330 2.5895 8 6 4.3187 -0.0321 3.5273 9 8 4.7831 -1.1346 3.3196 10 7 4.1783 0.4126 4.7918 11 6 4.5681 -0.3985 5.8681 12 6 5.1173 -1.6909 5.7760 13 7 5.3515 -2.1270 6.9875 14 7 4.9639 -1.1355 7.8978 15 6 5.0516 -1.2155 9.2656 16 1 4.7220 -0.3885 9.8771 17 6 5.5645 -2.3608 9.8634 18 7 5.9655 -3.3658 9.1200 19 14 5.6845 -2.4693 11.7244 20 1 4.3296 -2.3317 12.3166 21 1 6.2615 -3.7829 12.1075 22 1 6.5581 -1.3794 12.2285 23 6 4.4829 -0.0765 7.1845 24 6 4.1227 0.7806 -1.3633 25 6 5.2516 1.7876 -1.0870 26 6 4.2599 2.5298 -0.1758 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 4.4804 -0.4633 0.9477 33 1 3.8077 1.2935 4.9577 34 1 5.3125 -2.2309 4.8612 35 1 6.3238 -4.1650 9.5372 36 1 4.0999 0.8472 7.5925 37 1 4.4612 -0.2547 -1.4031 38 1 3.4915 1.0534 -2.2090 39 1 5.5504 2.3602 -1.9650 40 1 6.0986 1.3581 -0.5522 41 1 3.6662 3.2809 -0.6969 42 1 4.7091 2.9067 0.7430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257279013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:25 Heat of formation + Delta-G solvation = 0.451167 kcal Electronic energy + Delta-G solvation = -26935.197461 eV Core-core repulsion = 22918.874999 eV Total energy + Delta-G solvation = -4016.322462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97167 -39.90198 -38.89000 -37.62266 -37.32036 -34.52567 -33.35051 -32.90688 -30.31065 -29.18895 -28.02574 -26.40241 -25.99490 -25.43246 -24.18962 -22.63006 -21.08317 -20.43269 -19.45081 -19.36305 -18.11484 -17.42173 -16.74315 -16.30842 -16.11579 -15.83719 -15.51262 -15.32287 -15.23510 -15.07671 -14.61405 -14.09173 -13.74830 -13.60328 -13.28274 -13.03563 -12.96021 -12.76680 -12.58468 -12.13915 -11.72539 -11.56437 -11.48302 -11.33649 -11.26310 -11.13836 -11.07328 -10.85757 -10.57743 -10.53412 -10.26498 -9.84292 -9.21650 -9.19458 -9.04533 -8.85712 -8.11467 -6.76232 -6.59145 -4.26527 1.69112 2.56860 2.95268 3.04169 3.07962 3.35053 3.46451 3.73459 3.75626 3.94600 4.15684 4.35852 4.40684 4.53961 4.60592 4.66171 4.97715 4.99286 5.02789 5.13339 5.18447 5.24585 5.35354 5.37382 5.48389 5.50199 5.62351 5.77322 5.81296 5.94341 6.21294 6.37650 6.38361 6.77625 6.89851 6.92651 6.96240 7.17637 7.28392 7.78652 7.89146 8.13444 8.20134 8.51185 8.71373 9.32568 9.61319 10.36589 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026733 B = 0.002461 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.136476 B =11375.376576 C =11638.770689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.060 3.940 4 C 0.154 3.846 5 N -0.676 5.676 6 C 0.521 3.479 7 O -0.528 6.528 8 C 0.484 3.516 9 O -0.521 6.521 10 N -0.584 5.584 11 C -0.069 4.069 12 C -0.027 4.027 13 N -0.260 5.260 14 N -0.139 5.139 15 C -0.322 4.322 16 H 0.117 0.883 17 C 0.046 3.954 18 N -0.768 5.768 19 Si 0.936 3.064 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.266 1.266 23 C -0.078 4.078 24 C -0.131 4.131 25 C -0.142 4.142 26 C -0.135 4.135 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.416 0.584 33 H 0.409 0.591 34 H 0.178 0.822 35 H 0.276 0.724 36 H 0.149 0.851 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.092 9.882 -18.020 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.018 4.018 4 C 0.067 3.933 5 N -0.329 5.329 6 C 0.303 3.697 7 O -0.404 6.404 8 C 0.265 3.735 9 O -0.399 6.399 10 N -0.227 5.227 11 C -0.174 4.174 12 C -0.202 4.202 13 N -0.091 5.091 14 N 0.095 4.905 15 C -0.455 4.455 16 H 0.135 0.865 17 C -0.171 4.171 18 N -0.394 5.394 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.229 4.229 24 C -0.168 4.168 25 C -0.179 4.179 26 C -0.173 4.173 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.253 0.747 33 H 0.243 0.757 34 H 0.194 0.806 35 H 0.087 0.913 36 H 0.166 0.834 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.450 8.494 -17.289 20.019 hybrid contribution -0.626 0.991 0.356 1.225 sum -6.076 9.486 -16.933 20.337 Atomic orbital electron populations 1.22741 0.81118 1.02816 0.99803 1.87912 1.19531 1.27303 1.95401 1.22847 0.92358 0.85414 1.01171 1.21373 0.91133 0.93688 0.87108 1.45232 1.59124 1.24549 1.03980 1.20243 0.78719 0.86525 0.84216 1.90700 1.44205 1.20339 1.85186 1.19656 0.82753 0.87337 0.83766 1.90658 1.44571 1.20389 1.84259 1.42136 1.58403 1.18664 1.03492 1.17254 1.19275 0.95472 0.85443 1.24153 1.04768 0.93938 0.97391 1.78264 1.23646 1.11298 0.95903 1.44556 1.32863 1.07733 1.05384 1.19872 1.44227 1.04205 0.77158 0.86505 1.25661 0.95335 0.94828 1.01293 1.70200 1.29268 1.03796 1.36137 0.85874 0.79321 0.78423 0.80423 1.19106 1.20098 1.19106 1.21296 1.15014 0.96507 0.90117 1.23181 0.97745 1.00666 0.95234 1.22891 0.97131 0.97993 0.99933 1.23211 0.97701 0.95341 1.01043 0.94075 0.94276 0.89568 0.91859 0.92338 0.74669 0.75664 0.80556 0.91308 0.83384 0.90281 0.88563 0.90843 0.89731 0.89034 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.56 10.59 -35.23 -0.37 -4.93 16 3 C 0.06 0.63 5.16 37.16 0.19 0.82 16 4 C 0.15 1.59 0.74 -131.01 -0.10 1.49 16 5 N -0.68 -8.58 5.02 -47.33 -0.24 -8.82 16 6 C 0.52 8.07 7.44 -11.66 -0.09 7.98 16 7 O -0.53 -8.52 14.36 5.48 0.08 -8.44 16 8 C 0.48 8.98 7.85 -11.65 -0.09 8.89 16 9 O -0.52 -10.83 13.63 5.44 0.07 -10.75 16 10 N -0.58 -11.22 5.45 -10.45 -0.06 -11.27 16 11 C -0.07 -1.61 6.90 -83.92 -0.58 -2.18 16 12 C -0.03 -0.70 10.85 -17.02 -0.18 -0.89 16 13 N -0.26 -7.53 10.39 30.81 0.32 -7.21 16 14 N -0.14 -3.80 3.73 -11.40 -0.04 -3.84 16 15 C -0.32 -8.48 10.25 -14.82 -0.15 -8.63 16 16 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 17 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.28 11.81 55.50 0.66 -20.62 16 19 Si 0.94 18.77 29.55 -169.99 -5.02 13.75 16 20 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 23 C -0.08 -1.85 11.50 -16.38 -0.19 -2.04 16 24 C -0.13 -1.01 7.38 -25.92 -0.19 -1.21 16 25 C -0.14 -1.09 7.99 -25.92 -0.21 -1.29 16 26 C -0.13 -1.23 6.95 -25.92 -0.18 -1.41 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.77 7.17 -51.93 -0.37 0.40 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.42 5.09 8.14 -40.82 -0.33 4.76 16 33 H 0.41 6.76 8.29 -40.82 -0.34 6.42 16 34 H 0.18 4.51 5.92 -52.48 -0.31 4.20 16 35 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.15 2.95 8.06 -52.49 -0.42 2.52 16 37 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 38 H 0.10 0.61 8.07 -51.93 -0.42 0.19 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.08 0.94 7.19 -51.93 -0.37 0.57 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -32.99 359.34 -5.43 -38.42 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -5.49 Total: 14.28 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.75 Total: 4.03 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.64 Total: -51.77 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.22 Total: -24.12 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.99 -5.43 -38.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257279013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.871 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds