Wall clock time and date at job start Tue Mar 31 2020 13:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99700 * 2 1 4 4 C 1.53006 * 109.47019 * 180.02562 * 3 2 1 5 5 N 1.46499 * 112.84601 * 304.06009 * 4 3 2 6 6 C 1.34770 * 120.00200 * 293.96117 * 5 4 3 7 7 O 1.21366 * 119.99963 * 354.97692 * 6 5 4 8 8 C 1.49304 * 120.00336 * 174.97588 * 6 5 4 9 9 O 1.21411 * 119.99770 * 0.02562 * 8 6 5 10 10 N 1.34779 * 120.00328 * 180.02562 * 8 6 5 11 11 C 1.40295 * 120.00119 * 179.97438 * 10 8 6 12 12 C 1.40726 * 126.09834 * 359.97433 * 11 10 8 13 13 N 1.30879 * 108.37497 * 180.02562 * 12 11 10 14 14 N 1.40066 * 108.43289 * 359.97438 * 13 12 11 15 15 C 1.37299 * 126.05208 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99866 * 180.02562 * 15 14 13 17 17 C 1.39005 * 119.99904 * 0.02562 * 15 14 13 18 18 N 1.31282 * 120.00040 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99849 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46974 * 60.00780 * 19 17 15 21 21 H 1.48502 * 109.47113 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47417 * 300.00608 * 19 17 15 23 23 C 1.35785 * 126.10032 * 179.97438 * 11 10 8 24 24 C 1.53784 * 113.68942 * 75.32553 * 4 3 2 25 25 C 1.53779 * 87.07872 * 139.99431 * 24 4 3 26 26 C 1.53774 * 113.61592 * 172.86054 * 4 3 2 27 27 H 1.09004 * 109.46575 * 299.99934 * 1 2 3 28 28 H 1.08991 * 109.46977 * 59.99927 * 1 2 3 29 29 H 1.08997 * 109.46661 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47223 * 60.00276 * 3 2 1 31 31 H 1.09004 * 109.47104 * 299.99906 * 3 2 1 32 32 H 0.97001 * 119.99532 * 113.97202 * 5 4 3 33 33 H 0.96998 * 120.00021 * 359.97438 * 10 8 6 34 34 H 1.08003 * 125.81325 * 0.03755 * 12 11 10 35 35 H 0.97007 * 120.00022 * 179.97438 * 18 17 15 36 36 H 1.08000 * 126.24984 * 0.24594 * 23 11 10 37 37 H 1.08994 * 113.61298 * 254.54246 * 24 4 3 38 38 H 1.08997 * 113.61230 * 25.44852 * 24 4 3 39 39 H 1.09000 * 113.61451 * 220.02342 * 25 24 4 40 40 H 1.08994 * 113.61662 * 89.11745 * 25 24 4 41 41 H 1.09001 * 113.61772 * 334.48500 * 26 4 3 42 42 H 1.09001 * 113.61579 * 105.38492 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.0433 0.3859 1.1175 6 6 3.9034 0.8308 2.3819 7 8 3.4396 1.9330 2.5895 8 6 4.3187 -0.0321 3.5273 9 8 4.7831 -1.1346 3.3196 10 7 4.1783 0.4126 4.7918 11 6 4.5681 -0.3985 5.8681 12 6 5.1173 -1.6909 5.7760 13 7 5.3515 -2.1270 6.9875 14 7 4.9639 -1.1355 7.8978 15 6 5.0516 -1.2155 9.2656 16 1 4.7220 -0.3885 9.8771 17 6 5.5645 -2.3608 9.8634 18 7 5.9655 -3.3658 9.1200 19 14 5.6845 -2.4693 11.7244 20 1 4.3296 -2.3317 12.3166 21 1 6.2615 -3.7829 12.1075 22 1 6.5581 -1.3794 12.2285 23 6 4.4829 -0.0765 7.1845 24 6 4.1227 0.7806 -1.3633 25 6 5.2516 1.7876 -1.0870 26 6 4.2599 2.5298 -0.1758 27 1 -0.3632 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 4.4804 -0.4633 0.9477 33 1 3.8077 1.2935 4.9577 34 1 5.3125 -2.2309 4.8612 35 1 6.3238 -4.1650 9.5372 36 1 4.0999 0.8472 7.5925 37 1 4.4612 -0.2547 -1.4031 38 1 3.4915 1.0534 -2.2090 39 1 5.5504 2.3602 -1.9650 40 1 6.0986 1.3581 -0.5522 41 1 3.6662 3.2809 -0.6969 42 1 4.7091 2.9067 0.7430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257279013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:24 Heat of formation + Delta-G solvation = -24.572376 kcal Electronic energy + Delta-G solvation = -26936.282563 eV Core-core repulsion = 22918.874999 eV Total energy + Delta-G solvation = -4017.407564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18845 -41.52960 -40.30309 -38.90484 -38.15776 -36.19572 -35.09699 -34.14448 -32.30480 -30.08510 -29.76812 -27.37605 -27.01466 -26.63698 -25.67632 -23.52949 -22.90391 -21.85811 -21.24536 -20.31793 -19.58302 -19.15602 -17.67807 -17.45861 -17.21267 -17.10780 -17.03553 -16.71903 -16.43658 -16.14905 -15.74555 -15.54050 -15.36149 -15.03648 -14.85379 -14.61932 -14.05321 -13.51348 -13.47226 -13.39062 -13.24818 -12.97864 -12.90811 -12.87856 -12.50734 -12.20827 -12.13350 -11.97277 -11.86247 -11.78744 -11.30637 -11.06049 -10.88293 -10.70452 -10.45099 -10.17936 -10.14766 -8.63442 -8.49136 -6.27286 0.28743 1.27382 1.30593 1.41668 1.57119 1.72716 2.03870 2.11922 2.52603 2.54719 2.72622 2.90671 3.07229 3.42819 3.51778 3.67987 3.89159 3.93814 4.31978 4.34731 4.38516 4.48236 4.51260 4.53252 4.58079 4.79005 4.83018 4.84811 4.94364 4.97031 5.00279 5.07218 5.10972 5.20793 5.23618 5.29696 5.52472 5.89657 6.01141 6.19011 6.24519 6.47716 6.66683 6.81513 7.06839 7.40453 7.61674 8.49877 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026733 B = 0.002461 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.136476 B =11375.376576 C =11638.770689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.060 3.940 4 C 0.135 3.865 5 N -0.664 5.664 6 C 0.529 3.471 7 O -0.534 6.534 8 C 0.484 3.516 9 O -0.544 6.544 10 N -0.582 5.582 11 C -0.057 4.057 12 C -0.049 4.049 13 N -0.307 5.307 14 N -0.163 5.163 15 C -0.354 4.354 16 H 0.142 0.858 17 C -0.005 4.005 18 N -0.821 5.821 19 Si 1.020 2.980 20 H -0.253 1.253 21 H -0.277 1.277 22 H -0.253 1.253 23 C -0.075 4.075 24 C -0.119 4.119 25 C -0.136 4.136 26 C -0.133 4.133 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.417 0.583 33 H 0.423 0.577 34 H 0.174 0.826 35 H 0.278 0.722 36 H 0.188 0.812 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.114 0.886 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.976 11.797 -18.973 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.017 4.017 4 C 0.049 3.951 5 N -0.316 5.316 6 C 0.310 3.690 7 O -0.411 6.411 8 C 0.266 3.734 9 O -0.422 6.422 10 N -0.227 5.227 11 C -0.163 4.163 12 C -0.225 4.225 13 N -0.139 5.139 14 N 0.069 4.931 15 C -0.485 4.485 16 H 0.159 0.841 17 C -0.217 4.217 18 N -0.448 5.448 19 Si 0.839 3.161 20 H -0.177 1.177 21 H -0.202 1.202 22 H -0.177 1.177 23 C -0.226 4.226 24 C -0.156 4.156 25 C -0.173 4.173 26 C -0.171 4.171 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.255 0.745 33 H 0.260 0.740 34 H 0.191 0.809 35 H 0.088 0.912 36 H 0.205 0.795 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.132 0.868 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.354 10.449 -18.297 22.007 hybrid contribution -0.413 0.461 0.453 0.767 sum -6.767 10.910 -17.844 21.982 Atomic orbital electron populations 1.22886 0.79909 1.03518 1.00643 1.87874 1.21011 1.28171 1.95561 1.22909 0.92187 0.85054 1.01571 1.21824 0.91425 0.94532 0.87351 1.45287 1.57920 1.24681 1.03679 1.19586 0.79233 0.85974 0.84247 1.90704 1.44894 1.20284 1.85233 1.20357 0.81341 0.87315 0.84360 1.90645 1.45162 1.21658 1.84755 1.42074 1.58840 1.18915 1.02890 1.17303 1.17594 0.94762 0.86642 1.24238 1.05953 0.95460 0.96811 1.78161 1.25398 1.13260 0.97066 1.44846 1.33975 1.08319 1.05916 1.20634 1.45004 1.05601 0.77273 0.84062 1.26899 0.94035 0.93867 1.06922 1.70375 1.30957 1.04751 1.38755 0.84636 0.79910 0.78490 0.73082 1.17743 1.20183 1.17721 1.21991 1.13588 0.96978 0.90077 1.23212 0.97586 1.00742 0.94072 1.22860 0.96485 0.97781 1.00200 1.23263 0.98122 0.95171 1.00572 0.94650 0.91981 0.89049 0.94039 0.89282 0.74508 0.73967 0.80880 0.91210 0.79478 0.90336 0.86214 0.88660 0.90896 0.86790 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -9.06 10.59 -148.98 -1.58 -10.64 16 3 C 0.06 1.15 5.16 71.98 0.37 1.52 16 4 C 0.13 2.53 0.74 4.13 0.00 2.53 16 5 N -0.66 -16.38 5.02 -422.00 -2.12 -18.50 16 6 C 0.53 16.16 7.44 87.22 0.65 16.81 16 7 O -0.53 -16.84 14.36 -3.30 -0.05 -16.89 16 8 C 0.48 18.04 7.85 87.22 0.69 18.72 16 9 O -0.54 -23.06 13.63 -3.44 -0.05 -23.11 16 10 N -0.58 -22.21 5.45 -305.32 -1.66 -23.88 16 11 C -0.06 -2.68 6.90 37.82 0.26 -2.42 16 12 C -0.05 -2.68 10.85 85.44 0.93 -1.76 16 13 N -0.31 -18.47 10.39 -56.43 -0.59 -19.06 16 14 N -0.16 -9.06 3.73 -189.98 -0.71 -9.77 16 15 C -0.35 -18.71 10.25 84.02 0.86 -17.85 16 16 H 0.14 6.45 7.83 -2.91 -0.02 6.43 16 17 C -0.01 -0.26 5.50 84.96 0.47 0.21 16 18 N -0.82 -47.04 11.81 21.66 0.26 -46.79 16 19 Si 1.02 38.29 29.55 68.60 2.03 40.32 16 20 H -0.25 -8.90 7.11 99.48 0.71 -8.20 16 21 H -0.28 -10.28 7.11 99.48 0.71 -9.58 16 22 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 23 C -0.08 -3.56 11.50 83.41 0.96 -2.60 16 24 C -0.12 -1.50 7.38 31.12 0.23 -1.27 16 25 C -0.14 -1.73 7.99 31.12 0.25 -1.48 16 26 C -0.13 -2.15 6.95 31.12 0.22 -1.93 16 27 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.04 0.97 7.17 -2.39 -0.02 0.95 16 31 H 0.09 1.14 8.10 -2.38 -0.02 1.12 16 32 H 0.42 10.05 8.14 -92.71 -0.75 9.29 16 33 H 0.42 13.57 8.29 -92.71 -0.77 12.80 16 34 H 0.17 9.30 5.92 -2.91 -0.02 9.28 16 35 H 0.28 14.65 8.31 -92.70 -0.77 13.88 16 36 H 0.19 7.07 8.06 -2.91 -0.02 7.04 16 37 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 38 H 0.12 1.01 8.07 -2.39 -0.02 0.99 16 39 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.11 1.31 8.10 -2.39 -0.02 1.29 16 42 H 0.06 1.26 7.19 -2.39 -0.02 1.24 16 Total: -1.00 -74.42 359.34 2.21 -72.21 By element: Atomic # 1 Polarization: 44.38 SS G_CDS: -0.45 Total: 43.94 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 7.13 Total: 12.16 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -4.82 Total: -117.99 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -1.67 Total: -50.63 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -74.42 2.21 -72.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257279013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.633 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds