Wall clock time and date at job start Tue Mar 31 2020 13:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48500 * 109.46964 * 264.52170 * 3 2 1 5 5 H 1.48501 * 109.47140 * 24.52242 * 3 2 1 6 6 H 1.48502 * 109.47265 * 144.52399 * 3 2 1 7 7 C 1.37876 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00194 * 357.21699 * 7 2 1 9 9 C 1.50706 * 119.99926 * 177.22251 * 7 2 1 10 10 H 1.09001 * 109.46923 * 354.92109 * 9 7 2 11 11 C 1.50704 * 109.46813 * 234.92677 * 9 7 2 12 12 O 1.21268 * 120.00245 * 247.65662 * 11 9 7 13 13 N 1.34781 * 119.99706 * 67.65867 * 11 9 7 14 14 C 1.39409 * 119.99636 * 185.10672 * 13 11 9 15 15 C 1.39036 * 119.69439 * 174.04521 * 14 13 11 16 16 C 1.38362 * 119.09967 * 179.72487 * 15 14 13 17 17 C 1.50698 * 120.75330 * 180.25534 * 16 15 14 18 18 C 1.53001 * 117.50049 * 188.62121 * 17 16 15 19 19 C 1.52994 * 117.50070 * 119.99549 * 17 16 15 20 20 C 1.38840 * 118.49491 * 0.27345 * 16 15 14 21 21 C 1.38077 * 119.30907 * 0.02562 * 20 16 15 22 22 N 1.31933 * 120.85188 * 359.97438 * 21 20 16 23 23 C 1.50696 * 109.47402 * 114.92816 * 9 7 2 24 24 C 1.38240 * 120.00063 * 52.57586 * 23 9 7 25 25 C 1.38232 * 119.99604 * 179.78873 * 24 23 9 26 26 C 1.38236 * 120.00366 * 0.44153 * 25 24 23 27 27 C 1.38232 * 119.99761 * 359.81063 * 26 25 24 28 28 C 1.38234 * 120.00222 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00491 * 0.02562 * 1 2 3 30 30 H 0.96994 * 119.99975 * 5.10062 * 13 11 9 31 31 H 1.07995 * 120.45348 * 359.97438 * 15 14 13 32 32 H 1.09004 * 115.55034 * 334.32618 * 17 16 15 33 33 H 1.09003 * 117.49705 * 359.97438 * 18 17 16 34 34 H 1.08996 * 117.50211 * 145.02029 * 18 17 16 35 35 H 1.08998 * 117.50109 * 214.97655 * 19 17 16 36 36 H 1.09006 * 117.50296 * 0.02562 * 19 17 16 37 37 H 1.07999 * 120.34667 * 179.97438 * 20 16 15 38 38 H 1.07999 * 119.57028 * 179.97438 * 21 20 16 39 39 H 1.08001 * 119.99840 * 359.97438 * 24 23 9 40 40 H 1.08007 * 119.99634 * 180.27088 * 25 24 23 41 41 H 1.08001 * 119.99984 * 179.83323 * 26 25 24 42 42 H 1.07996 * 120.00147 * 180.02562 * 27 26 25 43 43 H 1.07996 * 120.00251 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6124 1.9795 -1.3937 5 1 1.3935 2.6833 0.5811 6 1 3.4840 1.4763 0.8126 7 6 2.0044 -1.1941 0.0005 8 1 1.4654 -2.1288 0.0464 9 6 3.5102 -1.1949 -0.0627 10 1 3.8688 -0.1740 -0.1941 11 6 3.9636 -2.0401 -1.2251 12 8 4.5505 -3.0822 -1.0247 13 7 3.7169 -1.6377 -2.4876 14 6 4.0404 -2.4681 -3.5596 15 6 3.6714 -2.1030 -4.8494 16 6 4.0038 -2.9335 -5.9050 17 6 3.6275 -2.5714 -7.3185 18 6 3.8488 -3.6291 -8.4016 19 6 4.7623 -2.4038 -8.3309 20 6 4.6916 -4.1083 -5.6322 21 6 5.0207 -4.4112 -4.3259 22 7 4.6904 -3.5998 -3.3394 23 6 4.0665 -1.7620 1.2178 24 6 3.6292 -2.9903 1.6772 25 6 4.1428 -3.5125 2.8496 26 6 5.0869 -2.8022 3.5674 27 6 5.5202 -1.5716 3.1107 28 6 5.0100 -1.0514 1.9360 29 1 -0.4851 0.8400 -0.0004 30 1 3.3142 -0.7704 -2.6502 31 1 3.1362 -1.1816 -5.0256 32 1 2.7605 -1.9187 -7.4217 33 1 4.2671 -4.5869 -8.0918 34 1 3.1275 -3.6727 -9.2176 35 1 4.6418 -1.6412 -9.1003 36 1 5.7812 -2.5558 -7.9746 37 1 4.9657 -4.7787 -6.4334 38 1 5.5553 -5.3242 -4.1089 39 1 2.8886 -3.5433 1.1186 40 1 3.8044 -4.4742 3.2062 41 1 5.4861 -3.2090 4.4848 42 1 6.2581 -1.0169 3.6712 43 1 5.3483 -0.0898 1.5794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274649793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:16 Heat of formation + Delta-G solvation = 61.299473 kcal Electronic energy + Delta-G solvation = -26056.322698 eV Core-core repulsion = 22453.488079 eV Total energy + Delta-G solvation = -3602.834618 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51101 -39.19235 -38.02936 -37.07409 -34.17711 -33.67955 -31.78127 -31.57408 -30.14190 -29.76843 -27.75023 -24.72888 -23.76251 -23.19419 -22.47474 -21.89529 -21.69221 -20.19184 -19.26969 -17.45894 -17.16750 -16.75841 -16.23806 -15.91943 -15.48443 -15.06544 -14.75623 -14.48675 -14.31740 -14.01688 -13.91445 -13.66487 -13.16712 -12.95193 -12.82510 -12.63938 -12.31573 -12.07900 -11.86849 -11.80542 -11.60325 -11.20684 -11.16212 -11.13803 -10.64478 -10.50534 -10.27683 -10.16585 -10.03739 -9.60184 -9.40920 -9.13903 -8.92362 -8.49590 -8.13561 -7.86834 -7.84168 -6.37509 -4.41522 1.38186 1.45514 2.13782 2.20233 3.02938 3.16664 3.17694 3.41728 3.48851 3.72842 4.12100 4.26416 4.35469 4.57608 4.63980 4.76341 4.85822 4.91453 4.96499 5.20708 5.30922 5.38482 5.48181 5.54529 5.57682 5.60940 5.71583 5.81284 5.86306 5.90894 5.91361 5.97089 6.14140 6.15761 6.31830 6.38607 6.43835 6.65170 6.71277 6.84059 7.13489 7.17108 7.21703 7.25696 7.56122 7.72424 7.81031 8.17422 8.48581 8.65726 9.04772 9.18588 10.73743 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.003825 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.358262 B = 7319.112444 C = 8737.301260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.083 3.917 3 Si 0.864 3.136 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.510 4.510 8 H 0.084 0.916 9 C 0.031 3.969 10 H 0.066 0.934 11 C 0.518 3.482 12 O -0.489 6.489 13 N -0.656 5.656 14 C 0.382 3.618 15 C -0.212 4.212 16 C 0.016 3.984 17 C -0.119 4.119 18 C -0.173 4.173 19 C -0.166 4.166 20 C -0.224 4.224 21 C 0.136 3.864 22 N -0.479 5.479 23 C -0.027 4.027 24 C -0.072 4.072 25 C -0.129 4.129 26 C -0.141 4.141 27 C -0.129 4.129 28 C -0.132 4.132 29 H 0.270 0.730 30 H 0.417 0.583 31 H 0.133 0.867 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.153 0.847 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.568 -2.541 -11.057 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.122 4.122 3 Si 0.690 3.310 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.547 4.547 8 H 0.102 0.898 9 C 0.009 3.991 10 H 0.084 0.916 11 C 0.306 3.694 12 O -0.359 6.359 13 N -0.300 5.300 14 C 0.150 3.850 15 C -0.236 4.236 16 C 0.008 3.992 17 C -0.137 4.137 18 C -0.210 4.210 19 C -0.203 4.203 20 C -0.246 4.246 21 C -0.023 4.023 22 N -0.194 5.194 23 C -0.028 4.028 24 C -0.090 4.090 25 C -0.147 4.147 26 C -0.159 4.159 27 C -0.148 4.148 28 C -0.150 4.150 29 H 0.081 0.919 30 H 0.254 0.746 31 H 0.151 0.849 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.146 0.854 38 H 0.170 0.830 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.984 -3.339 -9.886 13.769 hybrid contribution -0.319 1.667 -0.899 1.921 sum 8.664 -1.671 -10.784 13.934 Atomic orbital electron populations 1.69847 1.06199 1.27623 1.47687 1.25060 0.94813 0.98689 0.93657 0.87028 0.80797 0.83847 0.79281 1.19564 1.20678 1.18374 1.20579 0.85908 0.95538 1.52685 0.89754 1.18430 0.98583 0.95052 0.87031 0.91590 1.21907 0.76548 0.87524 0.83396 1.90694 1.37225 1.23766 1.84213 1.43855 1.61186 1.20105 1.04877 1.18657 0.90872 0.89064 0.86443 1.21252 1.07810 1.03144 0.91402 1.19146 0.93983 0.93098 0.92971 1.21015 1.01168 1.03844 0.87698 1.23060 1.03173 0.94320 1.00457 1.23013 0.95777 1.00569 1.00972 1.21779 1.05492 0.98952 0.98384 1.22608 0.94658 0.97349 0.87688 1.67772 1.13340 1.03243 1.35075 1.19857 0.92784 0.93775 0.96378 1.20878 0.98146 0.95140 0.94880 1.21033 0.98111 0.99579 0.95966 1.20879 0.99345 0.95762 0.99943 1.20881 1.00684 0.96328 0.96864 1.20981 0.97972 0.99848 0.96198 0.91948 0.74597 0.84887 0.86571 0.88167 0.88367 0.88368 0.88482 0.85410 0.82951 0.86419 0.87070 0.87290 0.87214 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.38 13.96 55.43 0.77 -23.60 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.86 18.86 26.99 -169.99 -4.59 14.27 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.26 -5.48 6.72 56.52 0.38 -5.10 16 7 C -0.51 -13.06 8.24 -34.44 -0.28 -13.35 16 8 H 0.08 2.43 7.70 -52.49 -0.40 2.02 16 9 C 0.03 0.70 2.23 -94.07 -0.21 0.49 16 10 H 0.07 1.43 4.49 -51.93 -0.23 1.19 16 11 C 0.52 11.61 6.95 -10.98 -0.08 11.53 16 12 O -0.49 -11.99 13.61 5.57 0.08 -11.92 16 13 N -0.66 -12.84 5.38 -11.42 -0.06 -12.90 16 14 C 0.38 7.05 7.42 -154.70 -1.15 5.90 16 15 C -0.21 -3.18 9.67 -39.24 -0.38 -3.56 16 16 C 0.02 0.21 5.64 -104.35 -0.59 -0.38 16 17 C -0.12 -1.20 6.07 -91.77 -0.56 -1.75 16 18 C -0.17 -1.40 9.88 -26.73 -0.26 -1.66 16 19 C -0.17 -1.37 10.18 -26.73 -0.27 -1.64 16 20 C -0.22 -2.85 9.38 -39.42 -0.37 -3.22 16 21 C 0.14 2.05 11.17 -17.57 -0.20 1.86 16 22 N -0.48 -9.29 7.89 -12.37 -0.10 -9.39 16 23 C -0.03 -0.60 4.36 -104.62 -0.46 -1.06 16 24 C -0.07 -1.58 8.21 -39.58 -0.33 -1.91 16 25 C -0.13 -2.43 10.05 -39.58 -0.40 -2.82 16 26 C -0.14 -2.44 10.05 -39.58 -0.40 -2.84 16 27 C -0.13 -2.30 10.05 -39.58 -0.40 -2.69 16 28 C -0.13 -2.64 9.67 -39.58 -0.38 -3.03 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 30 H 0.42 7.29 8.70 -40.82 -0.36 6.94 16 31 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.10 0.78 6.25 -51.93 -0.32 0.45 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.13 1.25 6.16 -52.49 -0.32 0.93 16 38 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.12 2.70 7.57 -52.49 -0.40 2.30 16 40 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.11 2.03 7.96 -52.49 -0.42 1.61 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -31.40 363.45 -10.64 -42.04 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -5.42 Total: 14.11 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -6.80 Total: -18.09 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.61 Total: -45.89 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.59 Total: 14.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.40 -10.64 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274649793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.338 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds