Wall clock time and date at job start Tue Mar 31 2020 13:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48500 * 109.46964 * 264.52170 * 3 2 1 5 5 H 1.48501 * 109.47140 * 24.52242 * 3 2 1 6 6 H 1.48502 * 109.47265 * 144.52399 * 3 2 1 7 7 C 1.37876 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00194 * 357.21699 * 7 2 1 9 9 C 1.50706 * 119.99926 * 177.22251 * 7 2 1 10 10 H 1.09001 * 109.46923 * 354.92109 * 9 7 2 11 11 C 1.50704 * 109.46813 * 234.92677 * 9 7 2 12 12 O 1.21268 * 120.00245 * 247.65662 * 11 9 7 13 13 N 1.34781 * 119.99706 * 67.65867 * 11 9 7 14 14 C 1.39409 * 119.99636 * 185.10672 * 13 11 9 15 15 C 1.39036 * 119.69439 * 174.04521 * 14 13 11 16 16 C 1.38362 * 119.09967 * 179.72487 * 15 14 13 17 17 C 1.50698 * 120.75330 * 180.25534 * 16 15 14 18 18 C 1.53001 * 117.50049 * 188.62121 * 17 16 15 19 19 C 1.52994 * 117.50070 * 119.99549 * 17 16 15 20 20 C 1.38840 * 118.49491 * 0.27345 * 16 15 14 21 21 C 1.38077 * 119.30907 * 0.02562 * 20 16 15 22 22 N 1.31933 * 120.85188 * 359.97438 * 21 20 16 23 23 C 1.50696 * 109.47402 * 114.92816 * 9 7 2 24 24 C 1.38240 * 120.00063 * 52.57586 * 23 9 7 25 25 C 1.38232 * 119.99604 * 179.78873 * 24 23 9 26 26 C 1.38236 * 120.00366 * 0.44153 * 25 24 23 27 27 C 1.38232 * 119.99761 * 359.81063 * 26 25 24 28 28 C 1.38234 * 120.00222 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00491 * 0.02562 * 1 2 3 30 30 H 0.96994 * 119.99975 * 5.10062 * 13 11 9 31 31 H 1.07995 * 120.45348 * 359.97438 * 15 14 13 32 32 H 1.09004 * 115.55034 * 334.32618 * 17 16 15 33 33 H 1.09003 * 117.49705 * 359.97438 * 18 17 16 34 34 H 1.08996 * 117.50211 * 145.02029 * 18 17 16 35 35 H 1.08998 * 117.50109 * 214.97655 * 19 17 16 36 36 H 1.09006 * 117.50296 * 0.02562 * 19 17 16 37 37 H 1.07999 * 120.34667 * 179.97438 * 20 16 15 38 38 H 1.07999 * 119.57028 * 179.97438 * 21 20 16 39 39 H 1.08001 * 119.99840 * 359.97438 * 24 23 9 40 40 H 1.08007 * 119.99634 * 180.27088 * 25 24 23 41 41 H 1.08001 * 119.99984 * 179.83323 * 26 25 24 42 42 H 1.07996 * 120.00147 * 180.02562 * 27 26 25 43 43 H 1.07996 * 120.00251 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6124 1.9795 -1.3937 5 1 1.3935 2.6833 0.5811 6 1 3.4840 1.4763 0.8126 7 6 2.0044 -1.1941 0.0005 8 1 1.4654 -2.1288 0.0464 9 6 3.5102 -1.1949 -0.0627 10 1 3.8688 -0.1740 -0.1941 11 6 3.9636 -2.0401 -1.2251 12 8 4.5505 -3.0822 -1.0247 13 7 3.7169 -1.6377 -2.4876 14 6 4.0404 -2.4681 -3.5596 15 6 3.6714 -2.1030 -4.8494 16 6 4.0038 -2.9335 -5.9050 17 6 3.6275 -2.5714 -7.3185 18 6 3.8488 -3.6291 -8.4016 19 6 4.7623 -2.4038 -8.3309 20 6 4.6916 -4.1083 -5.6322 21 6 5.0207 -4.4112 -4.3259 22 7 4.6904 -3.5998 -3.3394 23 6 4.0665 -1.7620 1.2178 24 6 3.6292 -2.9903 1.6772 25 6 4.1428 -3.5125 2.8496 26 6 5.0869 -2.8022 3.5674 27 6 5.5202 -1.5716 3.1107 28 6 5.0100 -1.0514 1.9360 29 1 -0.4851 0.8400 -0.0004 30 1 3.3142 -0.7704 -2.6502 31 1 3.1362 -1.1816 -5.0256 32 1 2.7605 -1.9187 -7.4217 33 1 4.2671 -4.5869 -8.0918 34 1 3.1275 -3.6727 -9.2176 35 1 4.6418 -1.6412 -9.1003 36 1 5.7812 -2.5558 -7.9746 37 1 4.9657 -4.7787 -6.4334 38 1 5.5553 -5.3242 -4.1089 39 1 2.8886 -3.5433 1.1186 40 1 3.8044 -4.4742 3.2062 41 1 5.4861 -3.2090 4.4848 42 1 6.2581 -1.0169 3.6712 43 1 5.3483 -0.0898 1.5794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274649793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:15 Heat of formation + Delta-G solvation = 44.337807 kcal Electronic energy + Delta-G solvation = -26057.058211 eV Core-core repulsion = 22453.488079 eV Total energy + Delta-G solvation = -3603.570131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.84000 -40.65966 -39.42999 -38.06750 -35.71895 -35.49034 -33.41319 -32.86996 -31.64680 -31.06924 -29.40067 -26.08612 -25.31131 -24.40027 -23.40720 -23.14152 -23.04556 -21.50089 -20.75565 -19.22515 -18.62466 -18.18395 -17.58799 -17.19004 -16.71979 -16.40523 -16.14528 -16.00244 -15.82389 -15.44731 -15.05758 -14.85151 -14.69230 -14.56523 -14.45772 -14.14053 -13.75329 -13.46386 -13.25152 -12.92880 -12.79413 -12.58915 -12.37952 -12.10875 -12.03454 -11.95421 -11.73180 -11.58055 -11.42017 -11.31470 -11.03377 -10.80993 -10.16097 -9.97876 -9.65259 -9.39924 -9.20762 -8.37947 -6.48243 0.15684 0.32938 0.62133 0.68276 1.31491 1.38113 1.46603 1.82007 2.10003 2.27187 2.79945 2.93421 3.12796 3.16805 3.43365 3.64673 3.88187 4.00085 4.06235 4.08817 4.17717 4.19663 4.20318 4.29697 4.36670 4.38333 4.45249 4.50411 4.77631 4.80820 4.82422 4.86045 4.87581 5.06609 5.10956 5.15817 5.27502 5.30082 5.33792 5.37185 5.48367 5.68136 5.72326 5.87200 5.91785 6.15692 6.25204 6.34807 6.54748 7.11225 7.16589 7.45870 8.77340 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013208 B = 0.003825 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.358262 B = 7319.112444 C = 8737.301260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.034 3.966 3 Si 0.925 3.075 4 H -0.240 1.240 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.507 4.507 8 H 0.030 0.970 9 C 0.036 3.964 10 H 0.079 0.921 11 C 0.516 3.484 12 O -0.519 6.519 13 N -0.655 5.655 14 C 0.345 3.655 15 C -0.212 4.212 16 C 0.018 3.982 17 C -0.141 4.141 18 C -0.162 4.162 19 C -0.156 4.156 20 C -0.205 4.205 21 C 0.117 3.883 22 N -0.527 5.527 23 C -0.058 4.058 24 C -0.104 4.104 25 C -0.134 4.134 26 C -0.133 4.133 27 C -0.123 4.123 28 C -0.146 4.146 29 H 0.273 0.727 30 H 0.424 0.576 31 H 0.150 0.850 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.164 0.836 38 H 0.173 0.827 39 H 0.083 0.917 40 H 0.133 0.867 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.047 -1.590 -12.298 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.166 4.166 3 Si 0.747 3.253 4 H -0.164 1.164 5 H -0.209 1.209 6 H -0.168 1.168 7 C -0.545 4.545 8 H 0.048 0.952 9 C 0.014 3.986 10 H 0.097 0.903 11 C 0.305 3.695 12 O -0.392 6.392 13 N -0.301 5.301 14 C 0.115 3.885 15 C -0.235 4.235 16 C 0.010 3.990 17 C -0.159 4.159 18 C -0.199 4.199 19 C -0.193 4.193 20 C -0.226 4.226 21 C -0.041 4.041 22 N -0.243 5.243 23 C -0.059 4.059 24 C -0.122 4.122 25 C -0.152 4.152 26 C -0.151 4.151 27 C -0.140 4.140 28 C -0.164 4.164 29 H 0.082 0.918 30 H 0.261 0.739 31 H 0.167 0.833 32 H 0.140 0.860 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.182 0.818 38 H 0.190 0.810 39 H 0.101 0.899 40 H 0.151 0.849 41 H 0.169 0.831 42 H 0.169 0.831 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.477 -2.404 -11.178 16.201 hybrid contribution -1.080 1.182 -0.599 1.709 sum 10.397 -1.222 -11.778 15.758 Atomic orbital electron populations 1.69996 1.08235 1.28792 1.49600 1.25868 0.95455 1.02464 0.92828 0.86047 0.79680 0.78422 0.81163 1.16391 1.20926 1.16844 1.20444 0.87682 0.93646 1.52711 0.95160 1.18343 0.96314 0.95902 0.88023 0.90303 1.21794 0.76377 0.87041 0.84331 1.90652 1.38891 1.24762 1.84897 1.43657 1.61175 1.20648 1.04576 1.18883 0.92962 0.89579 0.87097 1.21468 1.07464 1.04109 0.90491 1.19559 0.92748 0.92483 0.94197 1.21061 1.02609 1.05976 0.86229 1.23200 1.03052 0.94135 0.99477 1.23104 0.95034 1.01127 1.00008 1.22139 1.03334 0.98903 0.98197 1.23050 0.95148 0.97637 0.88235 1.67619 1.14723 1.04350 1.37565 1.19944 0.94704 0.94624 0.96639 1.20809 0.99004 0.95800 0.96619 1.21337 0.98263 1.00665 0.94914 1.21365 0.97765 0.95276 1.00708 1.21373 1.00383 0.96453 0.95830 1.21260 0.97669 1.00431 0.97058 0.91762 0.73877 0.83258 0.85973 0.87634 0.86738 0.86703 0.88679 0.81832 0.81016 0.89856 0.84935 0.83058 0.83103 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.13 13.96 21.45 0.30 -53.83 16 2 C 0.03 1.84 5.47 84.66 0.46 2.31 16 3 Si 0.93 38.81 26.99 68.60 1.85 40.66 16 4 H -0.24 -8.90 7.11 99.48 0.71 -8.19 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.24 -9.64 6.72 99.48 0.67 -8.97 16 7 C -0.51 -27.83 8.24 25.60 0.21 -27.62 16 8 H 0.03 1.93 7.70 -2.91 -0.02 1.91 16 9 C 0.04 1.70 2.23 -13.03 -0.03 1.67 16 10 H 0.08 3.43 4.49 -2.39 -0.01 3.42 16 11 C 0.52 24.57 6.95 87.66 0.61 25.18 16 12 O -0.52 -27.19 13.61 -2.99 -0.04 -27.23 16 13 N -0.66 -26.99 5.38 -308.45 -1.66 -28.65 16 14 C 0.34 13.26 7.42 132.91 0.99 14.24 16 15 C -0.21 -6.35 9.67 22.49 0.22 -6.13 16 16 C 0.02 0.45 5.64 -19.69 -0.11 0.34 16 17 C -0.14 -2.45 6.07 -11.54 -0.07 -2.52 16 18 C -0.16 -2.02 9.88 30.60 0.30 -1.72 16 19 C -0.16 -2.03 10.18 30.59 0.31 -1.72 16 20 C -0.20 -4.84 9.38 22.38 0.21 -4.63 16 21 C 0.12 3.53 11.17 84.64 0.95 4.48 16 22 N -0.53 -21.27 7.89 -193.04 -1.52 -22.79 16 23 C -0.06 -2.68 4.36 -19.87 -0.09 -2.77 16 24 C -0.10 -4.82 8.21 22.27 0.18 -4.64 16 25 C -0.13 -5.04 10.05 22.27 0.22 -4.82 16 26 C -0.13 -4.25 10.05 22.27 0.22 -4.03 16 27 C -0.12 -3.98 10.05 22.27 0.22 -3.75 16 28 C -0.15 -5.71 9.67 22.27 0.22 -5.49 16 29 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.42 15.44 8.70 -92.71 -0.81 14.63 16 31 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 32 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.11 1.21 6.25 -2.39 -0.01 1.19 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.16 2.63 6.16 -2.91 -0.02 2.61 16 38 H 0.17 4.23 8.06 -2.91 -0.02 4.21 16 39 H 0.08 4.29 7.57 -2.91 -0.02 4.27 16 40 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 42 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 43 H 0.13 4.37 7.96 -2.91 -0.02 4.35 16 Total: -1.00 -74.86 363.45 4.16 -70.70 By element: Atomic # 1 Polarization: 42.56 SS G_CDS: 0.20 Total: 42.76 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 5.03 Total: -21.62 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -2.88 Total: -105.27 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.04 Total: -27.23 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.85 Total: 40.66 kcal Total: -74.86 4.16 -70.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274649793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.039 kcal (2) G-P(sol) polarization free energy of solvation -74.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds