Wall clock time and date at job start Tue Mar 31 2020 12:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00390 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99688 * 3 2 1 5 5 C 1.46504 * 120.00271 * 269.99875 * 4 3 2 6 6 C 1.50697 * 109.47338 * 270.00352 * 5 4 3 7 7 H 1.08004 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00120 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99770 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99889 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47210 * 60.00704 * 10 8 6 12 12 H 1.48510 * 109.47028 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47297 * 300.00395 * 10 8 6 14 14 C 1.34777 * 119.99875 * 90.00619 * 4 3 2 15 15 O 1.21593 * 119.99953 * 179.97438 * 14 4 3 16 16 N 1.34773 * 120.00097 * 0.26801 * 14 4 3 17 17 C 1.39779 * 120.00002 * 179.72685 * 16 14 4 18 18 N 1.30897 * 126.08544 * 359.69444 * 17 16 14 19 19 N 1.39910 * 108.89131 * 179.85192 * 18 17 16 20 20 C 1.46505 * 125.66484 * 180.17983 * 19 18 17 21 21 C 1.34130 * 108.66786 * 0.41845 * 19 18 17 22 22 C 1.38198 * 107.53011 * 359.75763 * 21 19 18 23 23 C 1.47071 * 126.46092 * 179.97438 * 22 21 19 24 24 O 1.21554 * 119.99978 * 180.02562 * 23 22 21 25 25 O 1.34782 * 120.00173 * 0.02835 * 23 22 21 26 26 C 1.45201 * 116.99826 * 179.97438 * 25 23 22 27 27 H 1.07995 * 120.00480 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99858 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.99858 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46699 * 4.99708 * 3 2 1 31 31 H 1.09001 * 109.47407 * 244.99820 * 3 2 1 32 32 H 1.08994 * 109.46719 * 30.00276 * 5 4 3 33 33 H 1.08996 * 109.47068 * 150.00171 * 5 4 3 34 34 H 0.97004 * 119.99826 * 179.97438 * 9 8 6 35 35 H 0.97000 * 120.00112 * 359.73180 * 16 14 4 36 36 H 1.09005 * 109.46352 * 270.27748 * 20 19 18 37 37 H 1.08996 * 109.47501 * 30.28276 * 20 19 18 38 38 H 1.09002 * 109.47009 * 150.28843 * 20 19 18 39 39 H 1.08002 * 126.23178 * 179.77429 * 21 19 18 40 40 H 1.09010 * 109.47075 * 60.00116 * 26 25 23 41 41 H 1.08998 * 109.46928 * 179.97438 * 26 25 23 42 42 H 1.08994 * 109.47537 * 300.00442 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8369 1.6368 8 6 2.5185 4.0667 3.6082 9 7 1.9591 3.4660 4.6357 10 14 2.8730 5.8995 3.6773 11 1 2.1381 6.5873 2.5855 12 1 2.4320 6.4399 4.9884 13 1 4.3311 6.1282 3.5132 14 6 4.2497 0.8661 0.9824 15 8 5.0219 0.8887 1.9214 16 7 4.6515 0.3808 -0.2090 17 6 5.9558 -0.0970 -0.3650 18 7 6.8826 -0.1242 0.5589 19 7 8.0477 -0.6765 0.0157 20 6 9.3094 -0.8824 0.7312 21 6 7.8192 -0.9812 -1.2704 22 6 6.5124 -0.6329 -1.5549 23 6 5.8281 -0.7882 -2.8474 24 8 4.6697 -0.4400 -2.9674 25 8 6.4853 -1.3167 -3.8987 26 6 5.7471 -1.4404 -5.1430 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4026 -0.9314 32 1 1.4888 1.6967 2.5459 33 1 3.0989 1.3603 3.2260 34 1 1.7302 3.9747 5.4293 35 1 4.0356 0.3631 -0.9581 36 1 9.9331 0.0059 0.6307 37 1 9.1035 -1.0646 1.7859 38 1 9.8304 -1.7418 0.3090 39 1 8.5273 -1.4193 -1.9582 40 1 5.4173 -0.4541 -5.4695 41 1 6.3912 -1.8786 -5.9054 42 1 4.8790 -2.0810 -4.9883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001311306833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:48 Heat of formation + Delta-G solvation = 9.167201 kcal Electronic energy + Delta-G solvation = -27409.850374 eV Core-core repulsion = 23393.905868 eV Total energy + Delta-G solvation = -4015.944506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55021 -39.94784 -39.39507 -36.45548 -35.76866 -34.68800 -33.08932 -32.40876 -31.82529 -30.66229 -27.97003 -27.59949 -26.58646 -25.37420 -23.43659 -22.78624 -21.43535 -20.47288 -19.82270 -18.85711 -18.01733 -17.30172 -17.03379 -16.49352 -16.43735 -16.29867 -15.63938 -15.59104 -14.85295 -14.70456 -14.38259 -13.93433 -13.78376 -13.55502 -13.40599 -13.17942 -12.88499 -12.70044 -12.61575 -12.19500 -12.14954 -11.67824 -11.22858 -11.04270 -10.90938 -10.86534 -10.84543 -10.59402 -10.51795 -10.43643 -10.11011 -9.59097 -9.18417 -9.10544 -8.96276 -8.35972 -8.26384 -7.59268 -5.96996 -4.01154 1.24512 2.14307 2.21514 2.51916 2.68206 3.12931 3.30861 3.37404 3.41120 3.45833 4.08691 4.27024 4.43261 4.52960 4.66067 4.93473 4.94911 5.00602 5.03266 5.16744 5.26753 5.29305 5.34429 5.36947 5.40820 5.48135 5.63685 5.79718 6.07483 6.24760 6.27527 6.68501 6.76101 6.88551 7.01198 7.04241 7.32060 7.53526 7.61034 7.77253 7.90414 8.02886 8.31009 8.65542 8.99522 9.32429 9.63723 11.10940 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.003876 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.037138 B = 7221.863430 C = 8583.041925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.167 4.167 3 C 0.134 3.866 4 N -0.601 5.601 5 C 0.263 3.737 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.691 3.309 15 O -0.539 6.539 16 N -0.651 5.651 17 C 0.385 3.615 18 N -0.275 5.275 19 N -0.354 5.354 20 C 0.098 3.902 21 C 0.141 3.859 22 C -0.314 4.314 23 C 0.548 3.452 24 O -0.522 6.522 25 O -0.360 6.360 26 C 0.039 3.961 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.421 0.579 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.192 0.808 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.667 -12.830 -18.122 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.187 4.187 3 C 0.010 3.990 4 N -0.336 5.336 5 C 0.144 3.856 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.392 3.608 15 O -0.410 6.410 16 N -0.309 5.309 17 C 0.124 3.876 18 N -0.104 5.104 19 N -0.131 5.131 20 C -0.042 4.042 21 C -0.015 4.015 22 C -0.329 4.329 23 C 0.395 3.605 24 O -0.412 6.412 25 O -0.277 6.277 26 C -0.055 4.055 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.263 0.737 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.209 0.791 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.109 -12.345 -15.895 22.989 hybrid contribution -0.473 0.791 -1.330 1.618 sum 10.637 -11.554 -17.225 23.310 Atomic orbital electron populations 1.23785 0.95724 1.01732 1.00640 1.23430 0.96515 0.98948 0.99795 1.20579 0.93300 0.95743 0.89352 1.47558 1.08595 1.63126 1.14297 1.19237 0.95286 0.93513 0.77560 1.21440 1.40355 0.93419 1.01278 0.92488 1.24910 0.95115 0.98676 0.95307 1.69929 1.42157 1.36185 1.05163 0.86565 0.78808 0.85012 0.77055 1.20282 1.21222 1.20242 1.16021 0.83564 0.79128 0.82100 1.90995 1.52174 1.59700 1.38137 1.42698 1.09232 1.64092 1.14857 1.18851 0.86416 0.92756 0.89567 1.78315 0.90891 1.23751 1.17464 1.48431 1.11570 1.45160 1.07896 1.22018 0.80256 1.02772 0.99198 1.23103 0.95874 0.95421 0.87060 1.18910 0.95926 1.25215 0.92874 1.19895 0.84178 0.73465 0.82988 1.90786 1.17662 1.48531 1.84192 1.86520 1.45171 1.75533 1.20454 1.23227 0.97225 1.02555 0.82531 0.88785 0.88223 0.87839 0.88889 0.91255 0.94620 0.93695 0.92727 0.73746 0.90005 0.88413 0.89030 0.79120 0.91862 0.88290 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 14.32 29.02 0.42 -2.16 16 2 C -0.17 -2.69 9.85 -36.02 -0.35 -3.04 16 3 C 0.13 2.44 5.62 -5.19 -0.03 2.41 16 4 N -0.60 -13.82 2.44 -182.19 -0.44 -14.26 16 5 C 0.26 7.18 5.16 -5.19 -0.03 7.15 16 6 C -0.53 -15.42 9.39 -34.44 -0.32 -15.75 16 7 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 9 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 10 Si 0.90 22.49 29.54 -169.99 -5.02 17.47 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.69 16.37 8.24 -86.92 -0.72 15.65 16 15 O -0.54 -14.94 14.64 5.28 0.08 -14.86 16 16 N -0.65 -12.83 5.28 -15.30 -0.08 -12.91 16 17 C 0.38 7.11 7.79 -154.46 -1.20 5.90 16 18 N -0.27 -5.21 10.72 31.62 0.34 -4.87 16 19 N -0.35 -4.47 3.97 -67.58 -0.27 -4.73 16 20 C 0.10 0.72 11.43 59.85 0.68 1.41 16 21 C 0.14 1.49 11.32 -16.56 -0.19 1.30 16 22 C -0.31 -4.49 6.14 -104.94 -0.64 -5.13 16 23 C 0.55 7.45 7.95 34.31 0.27 7.72 16 24 O -0.52 -8.17 14.99 -19.31 -0.29 -8.46 16 25 O -0.36 -3.77 10.39 -40.71 -0.42 -4.20 16 26 C 0.04 0.29 10.57 101.05 1.07 1.36 16 27 H 0.09 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.10 1.37 7.84 -52.48 -0.41 0.95 16 29 H 0.10 1.64 8.06 -52.48 -0.42 1.22 16 30 H 0.09 1.69 7.72 -51.93 -0.40 1.29 16 31 H 0.07 1.14 6.36 -51.93 -0.33 0.81 16 32 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 33 H 0.05 1.38 7.42 -51.93 -0.39 0.99 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.42 7.50 4.68 -40.82 -0.19 7.31 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.19 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -38.84 371.03 -6.41 -45.25 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.49 Total: 3.88 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: -1.14 Total: 18.54 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 0.28 Total: -63.22 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.64 Total: -27.51 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.84 -6.41 -45.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311306833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.415 kcal (2) G-P(sol) polarization free energy of solvation -38.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds