Wall clock time and date at job start Tue Mar 31 2020 12:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50703 * 120.00390 * 2 1 4 4 N 1.46496 * 109.47067 * 124.99688 * 3 2 1 5 5 C 1.46504 * 120.00271 * 269.99875 * 4 3 2 6 6 C 1.50697 * 109.47338 * 270.00352 * 5 4 3 7 7 H 1.08004 * 120.00186 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00120 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99770 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99889 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47210 * 60.00704 * 10 8 6 12 12 H 1.48510 * 109.47028 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47297 * 300.00395 * 10 8 6 14 14 C 1.34777 * 119.99875 * 90.00619 * 4 3 2 15 15 O 1.21593 * 119.99953 * 179.97438 * 14 4 3 16 16 N 1.34773 * 120.00097 * 0.26801 * 14 4 3 17 17 C 1.39779 * 120.00002 * 179.72685 * 16 14 4 18 18 N 1.30897 * 126.08544 * 359.69444 * 17 16 14 19 19 N 1.39910 * 108.89131 * 179.85192 * 18 17 16 20 20 C 1.46505 * 125.66484 * 180.17983 * 19 18 17 21 21 C 1.34130 * 108.66786 * 0.41845 * 19 18 17 22 22 C 1.38198 * 107.53011 * 359.75763 * 21 19 18 23 23 C 1.47071 * 126.46092 * 179.97438 * 22 21 19 24 24 O 1.21554 * 119.99978 * 180.02562 * 23 22 21 25 25 O 1.34782 * 120.00173 * 0.02835 * 23 22 21 26 26 C 1.45201 * 116.99826 * 179.97438 * 25 23 22 27 27 H 1.07995 * 120.00480 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99858 * 0.02562 * 1 2 3 29 29 H 1.08005 * 119.99858 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46699 * 4.99708 * 3 2 1 31 31 H 1.09001 * 109.47407 * 244.99820 * 3 2 1 32 32 H 1.08994 * 109.46719 * 30.00276 * 5 4 3 33 33 H 1.08996 * 109.47068 * 150.00171 * 5 4 3 34 34 H 0.97004 * 119.99826 * 179.97438 * 9 8 6 35 35 H 0.97000 * 120.00112 * 359.73180 * 16 14 4 36 36 H 1.09005 * 109.46352 * 270.27748 * 20 19 18 37 37 H 1.08996 * 109.47501 * 30.28276 * 20 19 18 38 38 H 1.09002 * 109.47009 * 150.28843 * 20 19 18 39 39 H 1.08002 * 126.23178 * 179.77429 * 21 19 18 40 40 H 1.09010 * 109.47075 * 60.00116 * 26 25 23 41 41 H 1.08998 * 109.46928 * 179.97438 * 26 25 23 42 42 H 1.08994 * 109.47537 * 300.00442 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8369 1.6368 8 6 2.5185 4.0667 3.6082 9 7 1.9591 3.4660 4.6357 10 14 2.8730 5.8995 3.6773 11 1 2.1381 6.5873 2.5855 12 1 2.4320 6.4399 4.9884 13 1 4.3311 6.1282 3.5132 14 6 4.2497 0.8661 0.9824 15 8 5.0219 0.8887 1.9214 16 7 4.6515 0.3808 -0.2090 17 6 5.9558 -0.0970 -0.3650 18 7 6.8826 -0.1242 0.5589 19 7 8.0477 -0.6765 0.0157 20 6 9.3094 -0.8824 0.7312 21 6 7.8192 -0.9812 -1.2704 22 6 6.5124 -0.6329 -1.5549 23 6 5.8281 -0.7882 -2.8474 24 8 4.6697 -0.4400 -2.9674 25 8 6.4853 -1.3167 -3.8987 26 6 5.7471 -1.4404 -5.1430 27 1 -0.5401 -0.9352 0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6214 1.4026 -0.9314 32 1 1.4888 1.6967 2.5459 33 1 3.0989 1.3603 3.2260 34 1 1.7302 3.9747 5.4293 35 1 4.0356 0.3631 -0.9581 36 1 9.9331 0.0059 0.6307 37 1 9.1035 -1.0646 1.7859 38 1 9.8304 -1.7418 0.3090 39 1 8.5273 -1.4193 -1.9582 40 1 5.4173 -0.4541 -5.4695 41 1 6.3912 -1.8786 -5.9054 42 1 4.8790 -2.0810 -4.9883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001311306833.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:47 Heat of formation + Delta-G solvation = -17.523716 kcal Electronic energy + Delta-G solvation = -27411.007779 eV Core-core repulsion = 23393.905868 eV Total energy + Delta-G solvation = -4017.101911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.68661 -41.12941 -40.85860 -37.51131 -37.32734 -36.20226 -35.04592 -33.82600 -33.27671 -31.78167 -29.61039 -28.62973 -27.59036 -26.94304 -25.24361 -23.92270 -22.78587 -21.69066 -21.14211 -20.34475 -19.22915 -18.67324 -18.48298 -18.28374 -17.58784 -17.40453 -16.84793 -16.74623 -16.38517 -16.21130 -15.93768 -15.64193 -14.93504 -14.67923 -14.55209 -14.25952 -14.23718 -14.07537 -13.64247 -13.48213 -13.33041 -13.14843 -12.92322 -12.86066 -12.59433 -12.32153 -12.21429 -11.98305 -11.92018 -11.70386 -11.69700 -11.59709 -11.00529 -10.64042 -10.38888 -10.13297 -9.70555 -9.32665 -8.21713 -6.36415 0.34409 0.94906 1.04951 1.33085 1.35896 1.40619 1.48058 1.67059 1.95872 2.06861 2.35964 2.44136 2.93227 3.07786 3.35286 3.82971 3.97802 4.12878 4.14607 4.27648 4.31999 4.43273 4.45285 4.46349 4.48657 4.55670 4.73082 4.77092 4.83110 4.92028 5.00145 5.17204 5.36230 5.45985 5.56087 5.64985 5.69780 5.80018 5.91204 5.92540 6.05749 6.48972 6.70860 6.81230 6.99754 7.29609 7.55364 8.85291 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.003876 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.037138 B = 7221.863430 C = 8583.041925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.191 4.191 3 C 0.134 3.866 4 N -0.606 5.606 5 C 0.283 3.717 6 C -0.546 4.546 7 H 0.050 0.950 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.968 3.032 11 H -0.260 1.260 12 H -0.275 1.275 13 H -0.281 1.281 14 C 0.689 3.311 15 O -0.590 6.590 16 N -0.642 5.642 17 C 0.352 3.648 18 N -0.337 5.337 19 N -0.351 5.351 20 C 0.087 3.913 21 C 0.180 3.820 22 C -0.335 4.335 23 C 0.552 3.448 24 O -0.552 6.552 25 O -0.349 6.349 26 C 0.031 3.969 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.031 0.969 33 H -0.001 1.001 34 H 0.268 0.732 35 H 0.428 0.572 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.144 0.856 39 H 0.254 0.746 40 H 0.059 0.941 41 H 0.138 0.862 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.061 -13.376 -20.735 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.210 4.210 3 C 0.012 3.988 4 N -0.340 5.340 5 C 0.162 3.838 6 C -0.585 4.585 7 H 0.068 0.932 8 C -0.188 4.188 9 N -0.565 5.565 10 Si 0.792 3.208 11 H -0.184 1.184 12 H -0.199 1.199 13 H -0.207 1.207 14 C 0.390 3.610 15 O -0.466 6.466 16 N -0.300 5.300 17 C 0.093 3.907 18 N -0.167 5.167 19 N -0.127 5.127 20 C -0.052 4.052 21 C 0.024 3.976 22 C -0.350 4.350 23 C 0.399 3.601 24 O -0.444 6.444 25 O -0.265 6.265 26 C -0.062 4.062 27 H 0.138 0.862 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.017 0.983 34 H 0.077 0.923 35 H 0.271 0.729 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.162 0.838 39 H 0.270 0.730 40 H 0.078 0.922 41 H 0.156 0.844 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.516 -12.925 -18.580 25.863 hybrid contribution -0.809 0.838 -0.592 1.306 sum 11.707 -12.087 -19.172 25.509 Atomic orbital electron populations 1.24062 0.94992 1.03276 0.97133 1.23239 0.97160 0.97679 1.02941 1.20764 0.92786 0.97150 0.88106 1.47427 1.09450 1.62874 1.14225 1.18674 0.94010 0.92503 0.78610 1.21666 1.40834 0.94404 1.01547 0.93204 1.25818 0.94550 1.03751 0.94682 1.70045 1.42608 1.38173 1.05705 0.85472 0.78332 0.78974 0.78022 1.18429 1.19943 1.20667 1.16168 0.83211 0.78930 0.82713 1.90936 1.53652 1.61851 1.40154 1.42340 1.10496 1.63754 1.13371 1.19197 0.85788 0.94200 0.91558 1.78123 0.93277 1.25347 1.19933 1.48763 1.11086 1.43945 1.08948 1.22504 0.78416 1.05660 0.98571 1.23946 0.95018 0.92180 0.86483 1.19079 0.97360 1.26340 0.92246 1.19829 0.83730 0.73058 0.83455 1.90763 1.18965 1.49989 1.84726 1.86498 1.44837 1.74573 1.20587 1.23566 0.98146 1.02704 0.81808 0.86239 0.87563 0.87946 0.89007 0.89740 0.95150 0.98284 0.92299 0.72892 0.88602 0.90011 0.83796 0.72993 0.92250 0.84443 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 14.32 67.79 0.97 -3.30 16 2 C -0.19 -6.18 9.85 25.65 0.25 -5.92 16 3 C 0.13 5.03 5.62 85.63 0.48 5.51 16 4 N -0.61 -29.44 2.44 -848.58 -2.07 -31.51 16 5 C 0.28 16.37 5.16 85.63 0.44 16.81 16 6 C -0.55 -33.25 9.39 25.60 0.24 -33.01 16 7 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 8 C 0.01 0.67 5.46 84.65 0.46 1.13 16 9 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 10 Si 0.97 46.70 29.54 68.60 2.03 48.72 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 14 C 0.69 34.75 8.24 179.06 1.48 36.23 16 15 O -0.59 -35.16 14.64 -4.01 -0.06 -35.22 16 16 N -0.64 -26.63 5.28 -320.58 -1.69 -28.33 16 17 C 0.35 13.42 7.79 133.92 1.04 14.46 16 18 N -0.34 -13.21 10.72 -53.89 -0.58 -13.79 16 19 N -0.35 -8.31 3.97 -367.73 -1.46 -9.77 16 20 C 0.09 1.07 11.43 127.77 1.46 2.53 16 21 C 0.18 3.22 11.32 84.33 0.95 4.18 16 22 C -0.34 -9.26 6.14 -20.07 -0.12 -9.38 16 23 C 0.55 14.32 7.95 70.14 0.56 14.88 16 24 O -0.55 -17.22 14.99 19.66 0.29 -16.93 16 25 O -0.35 -6.33 10.39 -56.93 -0.59 -6.92 16 26 C 0.03 0.38 10.57 113.37 1.20 1.58 16 27 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.11 2.76 7.84 -2.91 -0.02 2.74 16 29 H 0.10 3.33 8.06 -2.91 -0.02 3.31 16 30 H 0.09 3.41 7.72 -2.39 -0.02 3.40 16 31 H 0.08 2.85 6.36 -2.39 -0.02 2.84 16 32 H 0.03 1.76 8.07 -2.39 -0.02 1.74 16 33 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 34 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.43 15.96 4.68 -92.71 -0.43 15.52 16 36 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.25 1.15 8.06 -2.91 -0.02 1.13 16 40 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -91.75 371.03 6.18 -85.57 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.61 Total: 19.79 kcal Atomic # 6 Polarization: 36.29 SS G_CDS: 9.41 Total: 45.71 kcal Atomic # 7 Polarization: -135.20 SS G_CDS: -5.52 Total: -140.72 kcal Atomic # 8 Polarization: -58.72 SS G_CDS: -0.36 Total: -59.07 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -91.75 6.18 -85.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001311306833.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.050 kcal (2) G-P(sol) polarization free energy of solvation -91.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds